ISSpu19
- Family IS1380
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NZ_AAWY01000042 | ND | Shewanella putrefaciens | Shewanella putrefaciens 200 |
DNA section
IS Length : 1648 bp
Ends
IR Length : 13/15
IRL : CTGATTCCGTGACTTAAAACCCCTCTCACACCCCTGCAGAGCTGTAATCA
IRR : CTGAATCAGTGACTTTGTCAGCGGGTACCGCGCAGCTGCGCAAAAGCGGC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| ACAACAAAAC | ATTGTTGTTT | 0 |
DNA sequence
CTGATTCCGTGACTTAAAACCCCTCTCACACCCCTGCAGAGCTGTAATCATACGGCCTGAAGCAGTAAAATGACCACTGCTTTTCGTTCACCCAGACAGT
GACTTTTTTCCATGCGCACCTTCAAACTCGAACAGTCTAAAACCGAGACTATCACACCCCATGGCGGCCTGGCGTTGGTCGGACATTGCCTCAACAAACA
GACCTCGCTGGCCAAAACCTCACGCTCAGTCGTCAAGCGTCATGGCATTGCAAACATCGATCTCATTCGCACCTATCTGGGGCTGATTTGCCTCGGCAAA
AGCGACTTCGAAGCCGTTGAACTGGCGCGCCACGACCCCTTCTTCAAAGCCACCCTGGGGATCAAACAGTCGCCTTCCTCGGCCCGGTTGCGCCAGCGTT
TTGATGAGGATGCCCGGGCACTGATCCCGCTGCTGGATGAGGCCAGTGTCGAGTTTCTGCGCAACGCCTCGGTGCCTATCGGTACTCTGGCCACCGGTCA
TGTGCCGTTGGATATGGACGTCTTCCCCATGGATAATAGCAACACCAAAAAAGAAGGGGTGGCCTACACCTACAAGGGGCACGATGGCTACGCGCCGATC
GCGGCCTATCTGGGCCAGGAGGGCTGGTGTCTGGGCTGTGAACTGCGTCCCGGCAACCAGCACGCCAACAAAGAGTTTATTCATACCCTCGACCGGGTAT
TGCCACGGGCCCGTGCATTGACCAACGCCCCCATACTGACGCGCCTTGACAGTGCTCACGATGCCCTCGAGAACCGGCAGTATTTCCGCCAATCCCAGTT
CGACTACCTGATCAAGTGGAACCCCCGCAAGCAGGATGGACTGGACTGGGTCGACAAGGCCAATGCGGCCGGATCACTCTGGTGCCACACCCGGCCGGGT
AAGATGGAGACGCTCGTTACTGAACCCCTGGACGGCACCGATGACCGTCTGATCGTTAAAATTACCGTGCGTCAGAGCGACGCCCTGGGTCAGCTGTTTC
TGGAGCCGCAGATCAGTCTGGAAGGCTGGACTACCTCGTTAACACCGGCGGTGGCGGACAATGCCGCAGTGATCGCCCTCTATCGAGATCATGCCACCAG
TGAGCAGTTCCATAGCGAGTTCAAGACCGATCTGGATCTTGAGCGCCTGCCCTCCGGCAAGTTTAACACCAACGACCTGGTACTGGCCTTTGCGGTGCTG
GGCTATAACATCCTGCGCTGGATGGGGCAGCGGGCCCTGCTGGGACCGGACGCCCCGGTCCGTCATAAAGCCAAACGCCGGCGGCTGAAAACCGTGATGC
AGGAGCTGATGTACATGGCCTGCCGCCTGGTCAGCAGTGGTCGCCAGCTTACCCTGCGCTTCGGTCAGCACTGCCCGGGGTTCAAGGCGTTCACTACCGT
CTACGGATCGGTATAACCGATCACTCGCCCACCCACGAATATGCTGCAGGGCCGACGGGTTCAAGGGGAGCTATTGCCTTGCCGAAGCAATCGATCAAAA
AAACATCAGCAACGGCCCTGATCATAGTCGGAAATCAGATCAACAGAGCTATACAAGGCGATAAAACTCGGGATGAGGTCGTATTCTTAAAGAGCGATGC
CGCTTTTGCGCAGCTGCGCGGTACCCGCTGACAAAGTCACTGATTCAG
GACTTTTTTCCATGCGCACCTTCAAACTCGAACAGTCTAAAACCGAGACTATCACACCCCATGGCGGCCTGGCGTTGGTCGGACATTGCCTCAACAAACA
GACCTCGCTGGCCAAAACCTCACGCTCAGTCGTCAAGCGTCATGGCATTGCAAACATCGATCTCATTCGCACCTATCTGGGGCTGATTTGCCTCGGCAAA
AGCGACTTCGAAGCCGTTGAACTGGCGCGCCACGACCCCTTCTTCAAAGCCACCCTGGGGATCAAACAGTCGCCTTCCTCGGCCCGGTTGCGCCAGCGTT
TTGATGAGGATGCCCGGGCACTGATCCCGCTGCTGGATGAGGCCAGTGTCGAGTTTCTGCGCAACGCCTCGGTGCCTATCGGTACTCTGGCCACCGGTCA
TGTGCCGTTGGATATGGACGTCTTCCCCATGGATAATAGCAACACCAAAAAAGAAGGGGTGGCCTACACCTACAAGGGGCACGATGGCTACGCGCCGATC
GCGGCCTATCTGGGCCAGGAGGGCTGGTGTCTGGGCTGTGAACTGCGTCCCGGCAACCAGCACGCCAACAAAGAGTTTATTCATACCCTCGACCGGGTAT
TGCCACGGGCCCGTGCATTGACCAACGCCCCCATACTGACGCGCCTTGACAGTGCTCACGATGCCCTCGAGAACCGGCAGTATTTCCGCCAATCCCAGTT
CGACTACCTGATCAAGTGGAACCCCCGCAAGCAGGATGGACTGGACTGGGTCGACAAGGCCAATGCGGCCGGATCACTCTGGTGCCACACCCGGCCGGGT
AAGATGGAGACGCTCGTTACTGAACCCCTGGACGGCACCGATGACCGTCTGATCGTTAAAATTACCGTGCGTCAGAGCGACGCCCTGGGTCAGCTGTTTC
TGGAGCCGCAGATCAGTCTGGAAGGCTGGACTACCTCGTTAACACCGGCGGTGGCGGACAATGCCGCAGTGATCGCCCTCTATCGAGATCATGCCACCAG
TGAGCAGTTCCATAGCGAGTTCAAGACCGATCTGGATCTTGAGCGCCTGCCCTCCGGCAAGTTTAACACCAACGACCTGGTACTGGCCTTTGCGGTGCTG
GGCTATAACATCCTGCGCTGGATGGGGCAGCGGGCCCTGCTGGGACCGGACGCCCCGGTCCGTCATAAAGCCAAACGCCGGCGGCTGAAAACCGTGATGC
AGGAGCTGATGTACATGGCCTGCCGCCTGGTCAGCAGTGGTCGCCAGCTTACCCTGCGCTTCGGTCAGCACTGCCCGGGGTTCAAGGCGTTCACTACCGT
CTACGGATCGGTATAACCGATCACTCGCCCACCCACGAATATGCTGCAGGGCCGACGGGTTCAAGGGGAGCTATTGCCTTGCCGAAGCAATCGATCAAAA
AAACATCAGCAACGGCCCTGATCATAGTCGGAAATCAGATCAACAGAGCTATACAAGGCGATAAAACTCGGGATGAGGTCGTATTCTTAAAGAGCGATGC
CGCTTTTGCGCAGCTGCGCGGTACCCGCTGACAAAGTCACTGATTCAG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1305 bp | 434 aa | 112 | 1416 | + | No |
Chemistry : DDE
ORF sequence :
MRTFKLEQSKTETITPHGGLALVGHCLNKQTSLAKTSRSVVKRHGIANIDLIRTYLGLICLGKSDFEAVELARHDPFFKATLGIKQSPSSARLRQRFDED
ARALIPLLDEASVEFLRNASVPIGTLATGHVPLDMDVFPMDNSNTKKEGVAYTYKGHDGYAPIAAYLGQEGWCLGCELRPGNQHANKEFIHTLDRVLPRA
RALTNAPILTRLDSAHDALENRQYFRQSQFDYLIKWNPRKQDGLDWVDKANAAGSLWCHTRPGKMETLVTEPLDGTDDRLIVKITVRQSDALGQLFLEPQ
ISLEGWTTSLTPAVADNAAVIALYRDHATSEQFHSEFKTDLDLERLPSGKFNTNDLVLAFAVLGYNILRWMGQRALLGPDAPVRHKAKRRRLKTVMQELM
YMACRLVSSGRQLTLRFGQHCPGFKAFTTVYGSV
ARALIPLLDEASVEFLRNASVPIGTLATGHVPLDMDVFPMDNSNTKKEGVAYTYKGHDGYAPIAAYLGQEGWCLGCELRPGNQHANKEFIHTLDRVLPRA
RALTNAPILTRLDSAHDALENRQYFRQSQFDYLIKWNPRKQDGLDWVDKANAAGSLWCHTRPGKMETLVTEPLDGTDDRLIVKITVRQSDALGQLFLEPQ
ISLEGWTTSLTPAVADNAAVIALYRDHATSEQFHSEFKTDLDLERLPSGKFNTNDLVLAFAVLGYNILRWMGQRALLGPDAPVRHKAKRRRLKTVMQELM
YMACRLVSSGRQLTLRFGQHCPGFKAFTTVYGSV
Blast result :
Comments
ISSpu19 is 66% aa similar to ISMasp7.
References
1] ISfinder annotation (2009)
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Pitluck,S. and Richardson,P. (2007) Direct submission GenBank.
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Pitluck,S. and Richardson,P. (2007) Direct submission GenBank.