ISMrsp6

  • Family IS1380
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_AAXY01000020 ND Marinobacter sp.
Marinobacter sp. ELB17
DNA section
IS Length : 1655 bp

Ends


IR Length : 20/28

IRL : CCTGAATCCGTGACTTCACGCGACCAAATTAACTCTTAAAGTCTTTAATA
IRR : CCTGAATCAGTGACTCCGTCCGAATATAGCAGGCAAAGCCTTGGCTGACC

Insertion site


Left flankDirect repeatRight flankDR Length
ATAGACTTTGATTTATTCAATTAAT5

DNA sequence

CCTGAATCCGTGACTTCACGCGACCAAATTAACTCTTAAAGTCTTTAATAACAAGGGTTTAGAAGGTATAATGCCATATTATGCCCACTCACCCAGTCAG
TGCATCAACCCATGCGTACTTTTACTCTCCAGCAATCAAAGACCGAAGTCTATACACCTCACGGCGGACTGGCCCTGGTGGGTCATTGCTTGAACCGGCA
CACCTCTCTGAACAAGACGGCCCGTACCATCGTCAAGCGTCACGGCATTCCGAATATGGACCTGATCCGGACCTATCTGGGCCTGATCACTCTGGGGAAA
AGCGATTTTGAGGCGGTTGAGTCGGTCCGCACGGATCCATTCTTTAAGTCCGCCATGGGGATCAAACAGGCACCGTCCTCGGCCCGATTGCGGCAACGCT
TTGATGAAGACGCCAAGCTGTTGATCCCTGTGCTGGAGGATGCCAGTGGCGAGTTTTTGGCCTCCATAAAGGGCCCGGTCACCCCGCTGGCGATGGGGCA
CGTGGCTCTGGATATGGATGTTTTTCCCATGGACAACAGCCAGACCCGCAAGGAAGGCGTCAGTTACACCTACAAAGGCTACGACGGTTATGCTCCGATT
GCGGCTTATTTGGGTCAGGAAGGCGGGTGCCTGGGTTGTGAGCTGCGCCCCGGCAGCCAGCATGCCAACAAGGGTTTTATCGATACTCTTGGTCGTGTCT
TGCCGCGCGCCCGCTCTCTGACGGCAGCCCCAATCCTAGTGCGTTTGGACAGCGCTCATGATGCCCGTGAGAATCGGAACTTTCTGCGCCAGCAGGAACA
CATCGATTTCCTGATCAAATGGAATCCCCGCAAACAGGATCCGTTGGCGTGGGCGGACAAAGCCCAATCACAAAAAGCGTGGACGTTGAACCGTGACGGC
AAGATGGAAGCCATTCTGTCGGAAGCTCTGCCAGACGAGCCCGGCGTTCGCCGAATCGTCAAGGTGACGGTGCGCACCAGCGATGCCCGAGGCCAACTGT
ACCTGGAGCCGGAAATCGGTCTGGAAGGCTGGATCACATCACTGCCTGCCCACGTGGCGGATGAACAGCAAGTTATGGCTCTGTACCGCGATCATGCCAC
CAGCGAACAATTCCACAGTGAGTTCAAGACCGACCTGGACTTGGAACGTCTACCTTCGGGCAAGTTCGACACCAACAACCTGGTGATGGCCTTCGCTACG
CTCGGCTACAACCTGCTGCGCTGGATGGGGCTGAGGCTCACCGGCCCGGATGCGCCAATACGGCACCCGGCCAAACGCCGCCGCCTAAGAACCGTGATGC
AGGAACTGATGTATATGGCCTGCCGCCTGGTCCACAGCAGCCGCCAGTGTTTCCTGCGTTTCGGCCGACACTGCCCGGGCTTTGCCGTTTACCGCGATCT
CTATCGAGGCCTTGCCTCCTCTGGGTAGACAGCCTGGCTCTCTTTCTTGCCCGACTCCAATCCGGCATATGATTTGGATAGAGATACTCTTGCCTGAACA
CCAAGAATTGATCAAAAATGATCTTTTTTAGCTGTGTCAATCGGAAAGATGACACACGTATTTTTAACATAATCGGAATAGCTTCAAAAAAATAAGTTTG
GCTTGGGTCAGCCAAGGCTTTGCCTGCTATATTCGGACGGAGTCACTGATTCAGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1317 bp438 aa1121428+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MRTFTLQQSKTEVYTPHGGLALVGHCLNRHTSLNKTARTIVKRHGIPNMDLIRTYLGLITLGKSDFEAVESVRTDPFFKSAMGIKQAPSSARLRQRFDED
AKLLIPVLEDASGEFLASIKGPVTPLAMGHVALDMDVFPMDNSQTRKEGVSYTYKGYDGYAPIAAYLGQEGGCLGCELRPGSQHANKGFIDTLGRVLPRA
RSLTAAPILVRLDSAHDARENRNFLRQQEHIDFLIKWNPRKQDPLAWADKAQSQKAWTLNRDGKMEAILSEALPDEPGVRRIVKVTVRTSDARGQLYLEP
EIGLEGWITSLPAHVADEQQVMALYRDHATSEQFHSEFKTDLDLERLPSGKFDTNNLVMAFATLGYNLLRWMGLRLTGPDAPIRHPAKRRRLRTVMQELM
YMACRLVHSSRQCFLRFGRHCPGFAVYRDLYRGLASSG

 

Blast result :
Comments
ISMrsp6 is 67% aa similar to ISMasp7.
References
1] Isfinder annotation (2009)
2] Ward,B., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2006) Direct submission GenBank.