ISMae9

  • Family IS1380
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s) ISMae30
Accession numberTranspositionOriginHost
NC_010296 ND Microcystis aeruginosa
Microcystis aeruginosa NIES-843
DNA section
IS Length : 1988 bp

Ends


IR Length : 17

IRL : CCCGCATTTCTCACAAAAAGTACGATCACCAACCCCCGAAGCCTTACAAA
IRR : CCCGCATTTCTCACAAACTGAATTAAGAACCTAATTTGGAGGTTAAAAGT

Insertion site


Left flankDirect repeatRight flankDR Length
AACCATTGCTTAACGATCGATCA3
GACTACTTAGATAAAGATCT0
TCAACAAGAATCAAGACCCC0
AGTGGTTAGCTTGTGTAAATGGTC4
TCATTAGTGCTAGGAGAGTAACTAA5
AAGAGAAAAGCAAAGACTATTACT4
ATCGAATCCCTTAAAGATACCCATT5
AGTCCAAGAGTTAAGATTGAAAGA4
CCGGTCTGTGAAGAAGAGAT0
TGATGGGTGCTAGAGACAAGGTTGC5
AAAACCCCAATTAACCCTAAGTA3
GGGGGAACGCACCATGCACATTTAT5

DNA sequence

CCCGCATTTCTCACAAAAAGTACGATCACCAACCCCCGAAGCCTTACAAAATCTGGGTTTTGACTGGGTGATCGCCTTGTAGCAAAAACGACAGTGTGTT
GTTAGGATTCAACTTAAGCTCATCATCAATTAGACCTTGAAAAAAGAACAAATTTAAAATGCGTATTTTTAGGTTAATTAGTTGATAAAGTCTCAATTTT
AAGTAGAGAATGAAGTCAAAAGCTTGCTATAATTTAATCATTAAAACTATTTAAAGTATGTCAAGTTTATGACTCCTAGTTCAGACCAGTCTCGACTCAA
TCAATTAAATTTTGGAAACCTCAATGGAAGACAAGTAATCGCTAATTTTGAGGGAGGAAAAATCACCTCAGATGCAGGAATTATTTTGATGGCAGAGTTA
GACCAAAAGCTAAAAATAACGGCTCGGTTTGCCGAATGTTTTCGAGATTATCGAAATTCATCCTATCTAGATTATTCAGTTCATGAACTACTCGCACAAA
GAGTTTATGGGATAGTTTTGGGATATGAGGATGTCAATGATCATGATAAATTACGTCATGCTCCAGCTTTAGCAATAGCATTGAAAAAACTAAATTTTAT
TGACTCAGCCCAAGCAAATTTAGCGGGAAAAAGTACAATTAATCGACTAGAATATTGTCCGGAAACAGTCATCAATCAAGAGAACAGTCGTTACCATAAA
ATCGAGCCTAACCCCAAAGAAATTGAAAAAGCTTTTGTGGACATCTTTCTAGAATCCTACAAAAAGCCACCGAAACCAATTATTTTAGACATGGATGTCA
CCGATGACCAAGTGCATGGAAATCAAGAGGGAGCGTTTTTCAATACTTATTATAAAGGAGTGTGTTATGCTCCTTTGTATATTTTCTGTGAGCATCATTT
ATTAGTAGCTAAACTCCGGTCTTCTCATGTAGATACTGCTGGGGGAGCATTAGAAGAATTGCAGCGAATAATCGGTATAATTCGAGAAAAATGGTCAGAT
ACGCAGATATTAGTACGAGGAGATAGTGCCTATTCCCGTGAAGATATCATGAAATTTTGCGAAAGTCAAGCAGGAGTTGATTATGTTTTAGCAATGGCAA
CGAATAGTCAATTAAAATTACGAGCGACCGATGTAATTGAGAAAGCTAAGGCAGATTACGAGCAAAGACTTCAGCCAGTTACTGAATTAATGGAGACGTT
ATTTTCTCCCGATGAAGAGTTAGGAGAATTGGCGAAATTGGTACCAGAATCGACTTGGTATCGTTCCCTATGTTATCAAACCCAAAAATCCTGGAGCCGT
TCAAGAAGAGTGGTGACAAAAGTTTGTCCTGGTAGTGAGGGCGTAAAAATTCGCCACGTTGTGACTTCTTTACCTGCATCAAAGATTCCCCCATCTAAAC
TTTACACTGAAAAATATTGCCCCAGAGGTGAGAGGTCAAATCGAATTAAAGAGCAACAATTAGACTTATTTGCTGACCGGAATTCGACACAGACATTTGA
GAGTAATCAATTAAGACTTTGGTTGTCATCAATGGCTTATGTTTTAATGCAAGCTTTTCGTCAAAATTGTTTGGCTAAAACTTCTTTTGCCAAAGCGACA
GTGGGAACAATTCGCCTTAATTTCCTTAAATTAGGAGCTAGAATTACTGTTAGTGTCAGAAGAATTTTAATCGCAATTGCCAGTTCTTGTCCCTATCAAG
ATATTTTAGCGATAGCTTACTCTAGAATTCAAGCGATAGCGGGAACTGGATAAGTTGAAGAGTTTTCAAAGATCATTAAATAGTCTTAAAAATGGCTGCT
TATAAATTCAGCTAACTTTGTCGTGAACATTTTCCCTAATTGACGGAATTTTTCCAGTAATTCAGGAATTTTTTGATTAGTTTAGTCAGATTATTCCTTG
ATAACTAAGCGGGTTTCTCTTATTTTTGAAAAACACCAACTTTTAACCTCCAAATTAGGTTCTTAATTCAGTTTGTGAGAAATGCGGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1485 bp494 aa2691753+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MTPSSDQSRLNQLNFGNLNGRQVIANFEGGKITSDAGIILMAELDQKLKITARFAECFRDYRNSSYLDYSVHELLAQRVYGIVLGYEDVNDHDKLRHAPA
LAIALKKLNFIDSAQANLAGKSTINRLEYCPETVINQENSRYHKIEPNPKEIEKAFVDIFLESYKKPPKPIILDMDVTDDQVHGNQEGAFFNTYYKGVCY
APLYIFCEHHLLVAKLRSSHVDTAGGALEELQRIIGIIREKWSDTQILVRGDSAYSREDIMKFCESQAGVDYVLAMATNSQLKLRATDVIEKAKADYEQR
LQPVTELMETLFSPDEELGELAKLVPESTWYRSLCYQTQKSWSRSRRVVTKVCPGSEGVKIRHVVTSLPASKIPPSKLYTEKYCPRGERSNRIKEQQLDL
FADRNSTQTFESNQLRLWLSSMAYVLMQAFRQNCLAKTSFAKATVGTIRLNFLKLGARITVSVRRILIAIASSCPYQDILAIAYSRIQAIAGTG

 

Blast result :
Comments
ISMae9 is 59% aa similar to IS1380.
References
1] ISfinder annotation (2009)
2] Kaneko,T., Nakajima,N., Okamoto,S., Suzuki,I., Tanabe,Y.,Tamaoki,M., Nakamura,Y., Kasai,F., Watanabe,A., Kawashima,K.,Kishida,Y., Ono,A., Shimizu,Y., Takahashi,C., Minami,C., Fujishiro,T., Kohara,M., Katoh,M., Nakazaki,N., Nakayama,S., Yamada,M., Tabata,S. and Watanabe,M.M. DNA Res. (2007) 14 (6), 247-256