ISHmo1
- Family IS1380
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_010337 | ND | Heliobacterium modesticaldum | Heliobacterium modesticaldum Ice1 |
DNA section
IS Length : 1700 bp
Ends
IR Length : 20/28
IRL : CCTGAATCCGTGACAGCGCTAAGTAGTAAATAGTCGAAATTCAGCGCATT
IRR : CCTGAATCCGTGAGTCGACTTAGCAGTACCCCAATGATTTTCCACAAAAA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTTACCAATC | TC | GAAGCCATTG | 2 |
CTCACGGATTCAGGATCCTT | AATCTGACCGAAGTTTTGGT | 0 | |
ATTCTCAATGATAATAATCT | ATCCTTCCTGAATCCGTGAC | 0 | |
GCACCGGGTAGTCAG | ATTAT | TGCTTCTCTGTAAAT | 5 |
TGCTGTGTTGGGATAATATA | AATCTCTTTTGTATTATCAG | 0 | |
GGAAAAATTAAACCCTTTTA | ATCTTAGTTATCCAACCGAT | 0 | |
AAGAATCGGAAGGCACTATT | ATAATATAGTTAACTGCAAA | 0 | |
CTAGAAGAAGTCGT | TTTTTT | CTTTTTCCACTTTC | 6 |
GGAACGAGGGTTTAC | TGAAT | GGAACGAGGGTTTGC | 5 |
GCGCCACATGCTTAATATTT | ATTAGGATTGCGCAGGTTCT | 0 | |
ATTTATAGAGATCAC | AATTG | GCGCTGCTGTCATCT | 5 |
TTCCTCCCTCAATAAATTAA | ATATCTTTTTGGCGTTCTCT | 0 |
DNA sequence
CCTGAATCCGTGACAGCGCTAAGTAGTAAATAGTCGAAATTCAGCGCATTTACCCGTATAATAGAGATAAACGAGTTTAATCGGAGTGATTTAAACTCAC
CGACGGGGTGAATGCATGACCATGAAGAAGTTCATTATCGAGCAATCGAATGAGGAGCTTACACCGGTAACTGGATTGGCGCTCGTGGGCGCCTTGTTAA
GAAAGACTTCGTTGAAATTGCGATTGGATAAGTCCACTGTGCCCACTTGTTTGACACCAGATATAAGCCACGGAACTGTTGCTCTGAGCTACCTGGGCCT
TCTCTGTCAGGGAAAGAATGACTTCGATGCGATTGAGCTGGCTCGTGGAGATGACTTTTTTCGATACGCCATGGGCGTCGACATCGTACCCTCCAGTCCC
ACGTTACGACAACGATTTGAAAAGGTTGTTGAGACGGATTTGAAATGGAACGACATCATTATGGAAGAATCTGCTCGTCTCATCAAAAAAGCAAAAGCTC
CCCTGACACCTGTTCGGGTCGGCGCTACGGACTATCTGACGGTAGACGTAGATGTGACGCCATTGGATAATTCCGGTTCCAAAAAAGAGGGGGTGACGCG
CACCTACAAAGGTCATGATGGCTTTGCGCCCATACTAGCCTACCTCGGTCAGGAAGGCTACTGCATAAACGTTGAGCTGCGTCCGGGCAAAGATCATAGC
CAGAAAGGAACGCCCCAGTTCTTAACAAAGAGCATCAATTACGCACGCCAGTGCGGAGCTGAGAAGCTTCTGGTACGCATGGATTCCGGCTTTGACAGCG
TCGATAACATACGTGTCCTCCGCGCAGAGAATGTTGACTACATAATCAAACGCAACCTTCGCCAAGAAACTCCCGAAATGTGGAGGGACATCGCCCTTAA
AAATGGGCAGGCCCGAATTGTTCGGGAAGGAAAAGTGGAGTATATGGGCAGTGTAATGTGGAAGGTCGGCAATATGGAACAACGTGAACGGGTGGTTTTC
CATGTCGTGGAACGAACCATCTTGTCCAATGGGCAGCAATTGCTGCTTCCAGAGTTAGAAGTGGCCACGTACTGGACGTCGTTACCCGTCTCGCCGGAAG
AATTGATCCATTTGCAAAGAGATCACGGAACCAGCGAGCAATTCCATAGCGAGTTAAAAACGGACCTTGATTTGGAACGACTGCCTAGTGGAAAATTTAA
GGTCAATGATCTGGTCTTTCATTTCGGTGCGCTTGCCTATAACCTGCTTCGCATCGTTGGTCAAATGAGCTTACACCATCCGGATTCTCCCCTAAAGAGA
AAGGCCCATACGCAGCGCCGCCGGATACGCACGGTACTTCAAAATGTGATCACCATTGCGTCTCGATTGGTGAGACATGCCAGACAAGTGAAGCTCCGGC
TCGGGGCGCATAGTCCCTGGTACGCAACGTTTAAGGATCTCTATCTTGCTTTTTCGTAAACGGCAAGAATTTCCTAAAAAATCAAATTCATTCGATGGGA
TAGACCTTTGGATGTAAAATGTGTCAAAGGTTAGCTTTGCTATACGCTTTTATGGATCTCGTTTCTTGACGGCACCACCTTCTTTGATAAGGCGACGTGT
TCAAATGGCTATCTAAGGAAATTGGATTAAATTCTTGTAATACGAATTACTTTTTGTGGAAAATCATTGGGGTACTGCTAAGTCGACTCACGGATTCAGG
CGACGGGGTGAATGCATGACCATGAAGAAGTTCATTATCGAGCAATCGAATGAGGAGCTTACACCGGTAACTGGATTGGCGCTCGTGGGCGCCTTGTTAA
GAAAGACTTCGTTGAAATTGCGATTGGATAAGTCCACTGTGCCCACTTGTTTGACACCAGATATAAGCCACGGAACTGTTGCTCTGAGCTACCTGGGCCT
TCTCTGTCAGGGAAAGAATGACTTCGATGCGATTGAGCTGGCTCGTGGAGATGACTTTTTTCGATACGCCATGGGCGTCGACATCGTACCCTCCAGTCCC
ACGTTACGACAACGATTTGAAAAGGTTGTTGAGACGGATTTGAAATGGAACGACATCATTATGGAAGAATCTGCTCGTCTCATCAAAAAAGCAAAAGCTC
CCCTGACACCTGTTCGGGTCGGCGCTACGGACTATCTGACGGTAGACGTAGATGTGACGCCATTGGATAATTCCGGTTCCAAAAAAGAGGGGGTGACGCG
CACCTACAAAGGTCATGATGGCTTTGCGCCCATACTAGCCTACCTCGGTCAGGAAGGCTACTGCATAAACGTTGAGCTGCGTCCGGGCAAAGATCATAGC
CAGAAAGGAACGCCCCAGTTCTTAACAAAGAGCATCAATTACGCACGCCAGTGCGGAGCTGAGAAGCTTCTGGTACGCATGGATTCCGGCTTTGACAGCG
TCGATAACATACGTGTCCTCCGCGCAGAGAATGTTGACTACATAATCAAACGCAACCTTCGCCAAGAAACTCCCGAAATGTGGAGGGACATCGCCCTTAA
AAATGGGCAGGCCCGAATTGTTCGGGAAGGAAAAGTGGAGTATATGGGCAGTGTAATGTGGAAGGTCGGCAATATGGAACAACGTGAACGGGTGGTTTTC
CATGTCGTGGAACGAACCATCTTGTCCAATGGGCAGCAATTGCTGCTTCCAGAGTTAGAAGTGGCCACGTACTGGACGTCGTTACCCGTCTCGCCGGAAG
AATTGATCCATTTGCAAAGAGATCACGGAACCAGCGAGCAATTCCATAGCGAGTTAAAAACGGACCTTGATTTGGAACGACTGCCTAGTGGAAAATTTAA
GGTCAATGATCTGGTCTTTCATTTCGGTGCGCTTGCCTATAACCTGCTTCGCATCGTTGGTCAAATGAGCTTACACCATCCGGATTCTCCCCTAAAGAGA
AAGGCCCATACGCAGCGCCGCCGGATACGCACGGTACTTCAAAATGTGATCACCATTGCGTCTCGATTGGTGAGACATGCCAGACAAGTGAAGCTCCGGC
TCGGGGCGCATAGTCCCTGGTACGCAACGTTTAAGGATCTCTATCTTGCTTTTTCGTAAACGGCAAGAATTTCCTAAAAAATCAAATTCATTCGATGGGA
TAGACCTTTGGATGTAAAATGTGTCAAAGGTTAGCTTTGCTATACGCTTTTATGGATCTCGTTTCTTGACGGCACCACCTTCTTTGATAAGGCGACGTGT
TCAAATGGCTATCTAAGGAAATTGGATTAAATTCTTGTAATACGAATTACTTTTTGTGGAAAATCATTGGGGTACTGCTAAGTCGACTCACGGATTCAGG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1344 bp | 447 aa | 116 | 1459 | + | No |
Chemistry : DDE
ORF sequence :
MTMKKFIIEQSNEELTPVTGLALVGALLRKTSLKLRLDKSTVPTCLTPDISHGTVALSYLGLLCQGKNDFDAIELARGDDFFRYAMGVDIVPSSPTLRQR
FEKVVETDLKWNDIIMEESARLIKKAKAPLTPVRVGATDYLTVDVDVTPLDNSGSKKEGVTRTYKGHDGFAPILAYLGQEGYCINVELRPGKDHSQKGTP
QFLTKSINYARQCGAEKLLVRMDSGFDSVDNIRVLRAENVDYIIKRNLRQETPEMWRDIALKNGQARIVREGKVEYMGSVMWKVGNMEQRERVVFHVVER
TILSNGQQLLLPELEVATYWTSLPVSPEELIHLQRDHGTSEQFHSELKTDLDLERLPSGKFKVNDLVFHFGALAYNLLRIVGQMSLHHPDSPLKRKAHTQ
RRRIRTVLQNVITIASRLVRHARQVKLRLGAHSPWYATFKDLYLAFS
FEKVVETDLKWNDIIMEESARLIKKAKAPLTPVRVGATDYLTVDVDVTPLDNSGSKKEGVTRTYKGHDGFAPILAYLGQEGYCINVELRPGKDHSQKGTP
QFLTKSINYARQCGAEKLLVRMDSGFDSVDNIRVLRAENVDYIIKRNLRQETPEMWRDIALKNGQARIVREGKVEYMGSVMWKVGNMEQRERVVFHVVER
TILSNGQQLLLPELEVATYWTSLPVSPEELIHLQRDHGTSEQFHSELKTDLDLERLPSGKFKVNDLVFHFGALAYNLLRIVGQMSLHHPDSPLKRKAHTQ
RRRIRTVLQNVITIASRLVRHARQVKLRLGAHSPWYATFKDLYLAFS
Blast result :
Comments
ISHmo1 is 62% aa similar to ISGsp2.
References
1] ISfinder annotation (2009)
2] Sattley,W.M., Madigan,M.T., Swingley,W.D., Cheung,P.C., Clocksin,K.M., Conrad,A.L., Dejesa,L.C., Honchak,B.M., Jung,D.O., Karbach,L.E., Kurdoglu,A., Lahiri,S., Mastrian,S.D., Page,L.E., Taylor,H.L., Wang,Z.T., Raymond,J., Chen,M., Blankenship,R.E. and Touchman,J.W. (2008) J. Bacteriol. 190 (13), 4687-4696
2] Sattley,W.M., Madigan,M.T., Swingley,W.D., Cheung,P.C., Clocksin,K.M., Conrad,A.L., Dejesa,L.C., Honchak,B.M., Jung,D.O., Karbach,L.E., Kurdoglu,A., Lahiri,S., Mastrian,S.D., Page,L.E., Taylor,H.L., Wang,Z.T., Raymond,J., Chen,M., Blankenship,R.E. and Touchman,J.W. (2008) J. Bacteriol. 190 (13), 4687-4696