ISHmo1

  • Family IS1380
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_010337 ND Heliobacterium modesticaldum
Heliobacterium modesticaldum Ice1
DNA section
IS Length : 1700 bp

Ends


IR Length : 20/28

IRL : CCTGAATCCGTGACAGCGCTAAGTAGTAAATAGTCGAAATTCAGCGCATT
IRR : CCTGAATCCGTGAGTCGACTTAGCAGTACCCCAATGATTTTCCACAAAAA

Insertion site


Left flankDirect repeatRight flankDR Length
TTTACCAATCTCGAAGCCATTG2
CTCACGGATTCAGGATCCTTAATCTGACCGAAGTTTTGGT0
ATTCTCAATGATAATAATCTATCCTTCCTGAATCCGTGAC0
GCACCGGGTAGTCAGATTATTGCTTCTCTGTAAAT5
TGCTGTGTTGGGATAATATAAATCTCTTTTGTATTATCAG0
GGAAAAATTAAACCCTTTTAATCTTAGTTATCCAACCGAT0
AAGAATCGGAAGGCACTATTATAATATAGTTAACTGCAAA0
CTAGAAGAAGTCGTTTTTTTCTTTTTCCACTTTC6
GGAACGAGGGTTTACTGAATGGAACGAGGGTTTGC5
GCGCCACATGCTTAATATTTATTAGGATTGCGCAGGTTCT0
ATTTATAGAGATCACAATTGGCGCTGCTGTCATCT5
TTCCTCCCTCAATAAATTAAATATCTTTTTGGCGTTCTCT0

DNA sequence

CCTGAATCCGTGACAGCGCTAAGTAGTAAATAGTCGAAATTCAGCGCATTTACCCGTATAATAGAGATAAACGAGTTTAATCGGAGTGATTTAAACTCAC
CGACGGGGTGAATGCATGACCATGAAGAAGTTCATTATCGAGCAATCGAATGAGGAGCTTACACCGGTAACTGGATTGGCGCTCGTGGGCGCCTTGTTAA
GAAAGACTTCGTTGAAATTGCGATTGGATAAGTCCACTGTGCCCACTTGTTTGACACCAGATATAAGCCACGGAACTGTTGCTCTGAGCTACCTGGGCCT
TCTCTGTCAGGGAAAGAATGACTTCGATGCGATTGAGCTGGCTCGTGGAGATGACTTTTTTCGATACGCCATGGGCGTCGACATCGTACCCTCCAGTCCC
ACGTTACGACAACGATTTGAAAAGGTTGTTGAGACGGATTTGAAATGGAACGACATCATTATGGAAGAATCTGCTCGTCTCATCAAAAAAGCAAAAGCTC
CCCTGACACCTGTTCGGGTCGGCGCTACGGACTATCTGACGGTAGACGTAGATGTGACGCCATTGGATAATTCCGGTTCCAAAAAAGAGGGGGTGACGCG
CACCTACAAAGGTCATGATGGCTTTGCGCCCATACTAGCCTACCTCGGTCAGGAAGGCTACTGCATAAACGTTGAGCTGCGTCCGGGCAAAGATCATAGC
CAGAAAGGAACGCCCCAGTTCTTAACAAAGAGCATCAATTACGCACGCCAGTGCGGAGCTGAGAAGCTTCTGGTACGCATGGATTCCGGCTTTGACAGCG
TCGATAACATACGTGTCCTCCGCGCAGAGAATGTTGACTACATAATCAAACGCAACCTTCGCCAAGAAACTCCCGAAATGTGGAGGGACATCGCCCTTAA
AAATGGGCAGGCCCGAATTGTTCGGGAAGGAAAAGTGGAGTATATGGGCAGTGTAATGTGGAAGGTCGGCAATATGGAACAACGTGAACGGGTGGTTTTC
CATGTCGTGGAACGAACCATCTTGTCCAATGGGCAGCAATTGCTGCTTCCAGAGTTAGAAGTGGCCACGTACTGGACGTCGTTACCCGTCTCGCCGGAAG
AATTGATCCATTTGCAAAGAGATCACGGAACCAGCGAGCAATTCCATAGCGAGTTAAAAACGGACCTTGATTTGGAACGACTGCCTAGTGGAAAATTTAA
GGTCAATGATCTGGTCTTTCATTTCGGTGCGCTTGCCTATAACCTGCTTCGCATCGTTGGTCAAATGAGCTTACACCATCCGGATTCTCCCCTAAAGAGA
AAGGCCCATACGCAGCGCCGCCGGATACGCACGGTACTTCAAAATGTGATCACCATTGCGTCTCGATTGGTGAGACATGCCAGACAAGTGAAGCTCCGGC
TCGGGGCGCATAGTCCCTGGTACGCAACGTTTAAGGATCTCTATCTTGCTTTTTCGTAAACGGCAAGAATTTCCTAAAAAATCAAATTCATTCGATGGGA
TAGACCTTTGGATGTAAAATGTGTCAAAGGTTAGCTTTGCTATACGCTTTTATGGATCTCGTTTCTTGACGGCACCACCTTCTTTGATAAGGCGACGTGT
TCAAATGGCTATCTAAGGAAATTGGATTAAATTCTTGTAATACGAATTACTTTTTGTGGAAAATCATTGGGGTACTGCTAAGTCGACTCACGGATTCAGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1344 bp447 aa1161459+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MTMKKFIIEQSNEELTPVTGLALVGALLRKTSLKLRLDKSTVPTCLTPDISHGTVALSYLGLLCQGKNDFDAIELARGDDFFRYAMGVDIVPSSPTLRQR
FEKVVETDLKWNDIIMEESARLIKKAKAPLTPVRVGATDYLTVDVDVTPLDNSGSKKEGVTRTYKGHDGFAPILAYLGQEGYCINVELRPGKDHSQKGTP
QFLTKSINYARQCGAEKLLVRMDSGFDSVDNIRVLRAENVDYIIKRNLRQETPEMWRDIALKNGQARIVREGKVEYMGSVMWKVGNMEQRERVVFHVVER
TILSNGQQLLLPELEVATYWTSLPVSPEELIHLQRDHGTSEQFHSELKTDLDLERLPSGKFKVNDLVFHFGALAYNLLRIVGQMSLHHPDSPLKRKAHTQ
RRRIRTVLQNVITIASRLVRHARQVKLRLGAHSPWYATFKDLYLAFS

 

Blast result :
Comments
ISHmo1 is 62% aa similar to ISGsp2.
References
1] ISfinder annotation (2009)
2] Sattley,W.M., Madigan,M.T., Swingley,W.D., Cheung,P.C., Clocksin,K.M., Conrad,A.L., Dejesa,L.C., Honchak,B.M., Jung,D.O., Karbach,L.E., Kurdoglu,A., Lahiri,S., Mastrian,S.D., Page,L.E., Taylor,H.L., Wang,Z.T., Raymond,J., Chen,M., Blankenship,R.E. and Touchman,J.W. (2008) J. Bacteriol. 190 (13), 4687-4696