ISLar2
- Family IS1380
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NZ_ABCK01000002 | ND | Lentisphaera araneosa | Lentisphaera araneosa HTCC2155 |
DNA section
IS Length : 1723 bp
Ends
IR Length : 13/17
IRL : CCTAAGAAGTACGAATTGTGTATAAAAGCTTCACTGGGTGGGTGAAAAGT
IRR : CCTAAATCGTACGATTTTATTTCCCAAAGGTCGTGATACGCGTGTATAGA
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| ACGAAATAAC | TAAAT | ATAAAAACAA | 5 |
| CTTCGGTTTC | TTTTA | GGGAGTATTT | 5 |
| CGCAACTACA | TAAGA | ATGTAGTAAT | 5 |
| TTATTTCTAA | TAAATGATAA | 0 | |
| TCTTTTTTAC | TGTTG | ATAATAATAC | 5 |
| AAAAAGATAT | AATAA | ACAAATTTCT | 5 |
DNA sequence
CCTAAGAAGTACGAATTGTGTATAAAAGCTTCACTGGGTGGGTGAAAAGTGGAGTTTGGGTTAAATTAGCTTCGACCAAAAAATCTCAACCCAAAAACCA
CGTACTTACGATGCCCAAGAAAATCAAAAAAACTAGAAAATCCAAGAAAGAATGTCGAAGAAAAATCAAAAAAATTGGAATCACCACAAACTGCTTAAGT
TCTCAAGCAGGATTAGCACCTTTTGTTAATTTCATTAATGGCACAGGTATTTGTGATGAGCTCGCACAGGTATTTAAAGATCTAAGAAAAAGCAAGAAAG
GCATAGAGCTTGAAGAAGCTTTTTTACAGCTTGTACTCTTTTTTGCGGACGGTCGTGAAAGTAGTTTAAACACCTTTGATACGCTGAAGGAAAACGAAGC
TTGGCAAAAACTTTTAGGCTGTGAAGTTGCTCTAGGTACGGCTGCATTAAAAAGAATCCTTCACAAAGCTTATACAGTAGATGTTGAGATGATTCGTCCT
TTAATCCGCAGGGTTTTTCTTAGTGCGCTCAAAGCTAAAAATCCGAATAAAGTCATTCTCTTTCTAGACTCCAGTGTCTACGATAACGACGGCGCTAAAT
GCCGCGCGGGAGTAAAATGTACCTACAAGAAAAAAGAAGGCTATCACCCAATCAACCTCATATGGGACGGCATGTATATCGATACTTATTTCCAATCAGG
TCATTGCTCAACAAATCACGATGGGGTTGCTATTGAGATGTTACAAGAAATCGTACCAATGATTCGTGAAAATCTTGGAGAAGACATTCAGGTCATCGTT
CGAATGGATGGTGGTTATTACGATCAAAAGATTTTTGCTGCTTGCGACGCGCTTAAAATCAACTTTATTTGTGCAGGGAAACGCTATTCAGATCACAAGA
TTCATGCCAATACAAAACTCGAAAACTTCGATGGCGTCTATCGTAAAAAAGCTTGTACTTGGCATTACCTTACTTTTCAAGAACGTCGTAAATCTTGGCC
CAAAGAGATGGCGTATCGAGCTTTGTTTTTACGGCCTACAGAAGAGAATGGCGAAGCTTTATTAGGTTTAGAAAGTCGTATTATCCTTACAAATCTTGAC
GTAAAATCTTGCTCCGATCAAGAAATAATTGATTATGATCATTCCCGCGGAGCTGATGAACTCACTCACCGTGCAGCTAAAGATTTCGCAAGTGAGAGGA
TGCCATGTCTCGACTTTCACGCTAACTCCCTTTGGTACTCAATGGGTATTGTATCCTTCAATCTCTTTCAGATTTTCAAACGCAACATTGCGGGTTTTTC
TTGGAACTGCTACCCCACTACGGTACGTCGTAAACTTTTTGATTTAGCAGGAAAAATCATTAATAAAGGACGCTCATTGACACTCAAAATTACCCCATGG
AAAATGAGGGAGTTGAAATTTGATCAAATATGGGAGAAATCACTTACGCCTTGGGTTCTTCCTGTTCTTTAGTTGCTGAATATACATTTTAAAAACGGGT
GCTTTTCAATAAGCGCCAGGATCCTCACGCCCAAATAATGGATGAAATACACAGAAATCACAATCTGAAGATCGAAAAACTCCATAAACTGATCTCTGGA
GCAATGGAGTCAAATTGATAAACGAGATGGACTTCAAGGAGAAAAATCATCCCTTTTGTAATGCCTAAAATAGTCTATACACGCGTATCACGACCTTTGG
GAAATAAAATCGTACGATTTAGG
CGTACTTACGATGCCCAAGAAAATCAAAAAAACTAGAAAATCCAAGAAAGAATGTCGAAGAAAAATCAAAAAAATTGGAATCACCACAAACTGCTTAAGT
TCTCAAGCAGGATTAGCACCTTTTGTTAATTTCATTAATGGCACAGGTATTTGTGATGAGCTCGCACAGGTATTTAAAGATCTAAGAAAAAGCAAGAAAG
GCATAGAGCTTGAAGAAGCTTTTTTACAGCTTGTACTCTTTTTTGCGGACGGTCGTGAAAGTAGTTTAAACACCTTTGATACGCTGAAGGAAAACGAAGC
TTGGCAAAAACTTTTAGGCTGTGAAGTTGCTCTAGGTACGGCTGCATTAAAAAGAATCCTTCACAAAGCTTATACAGTAGATGTTGAGATGATTCGTCCT
TTAATCCGCAGGGTTTTTCTTAGTGCGCTCAAAGCTAAAAATCCGAATAAAGTCATTCTCTTTCTAGACTCCAGTGTCTACGATAACGACGGCGCTAAAT
GCCGCGCGGGAGTAAAATGTACCTACAAGAAAAAAGAAGGCTATCACCCAATCAACCTCATATGGGACGGCATGTATATCGATACTTATTTCCAATCAGG
TCATTGCTCAACAAATCACGATGGGGTTGCTATTGAGATGTTACAAGAAATCGTACCAATGATTCGTGAAAATCTTGGAGAAGACATTCAGGTCATCGTT
CGAATGGATGGTGGTTATTACGATCAAAAGATTTTTGCTGCTTGCGACGCGCTTAAAATCAACTTTATTTGTGCAGGGAAACGCTATTCAGATCACAAGA
TTCATGCCAATACAAAACTCGAAAACTTCGATGGCGTCTATCGTAAAAAAGCTTGTACTTGGCATTACCTTACTTTTCAAGAACGTCGTAAATCTTGGCC
CAAAGAGATGGCGTATCGAGCTTTGTTTTTACGGCCTACAGAAGAGAATGGCGAAGCTTTATTAGGTTTAGAAAGTCGTATTATCCTTACAAATCTTGAC
GTAAAATCTTGCTCCGATCAAGAAATAATTGATTATGATCATTCCCGCGGAGCTGATGAACTCACTCACCGTGCAGCTAAAGATTTCGCAAGTGAGAGGA
TGCCATGTCTCGACTTTCACGCTAACTCCCTTTGGTACTCAATGGGTATTGTATCCTTCAATCTCTTTCAGATTTTCAAACGCAACATTGCGGGTTTTTC
TTGGAACTGCTACCCCACTACGGTACGTCGTAAACTTTTTGATTTAGCAGGAAAAATCATTAATAAAGGACGCTCATTGACACTCAAAATTACCCCATGG
AAAATGAGGGAGTTGAAATTTGATCAAATATGGGAGAAATCACTTACGCCTTGGGTTCTTCCTGTTCTTTAGTTGCTGAATATACATTTTAAAAACGGGT
GCTTTTCAATAAGCGCCAGGATCCTCACGCCCAAATAATGGATGAAATACACAGAAATCACAATCTGAAGATCGAAAAACTCCATAAACTGATCTCTGGA
GCAATGGAGTCAAATTGATAAACGAGATGGACTTCAAGGAGAAAAATCATCCCTTTTGTAATGCCTAAAATAGTCTATACACGCGTATCACGACCTTTGG
GAAATAAAATCGTACGATTTAGG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1455 bp | 484 aa | 18 | 1472 | + | No |
Chemistry : DDE
ORF sequence :
MYKSFTGWVKSGVWVKLASTKKSQPKNHVLTMPKKIKKTRKSKKECRRKIKKIGITTNCLSSQAGLAPFVNFINGTGICDELAQVFKDLRKSKKGIELEE
AFLQLVLFFADGRESSLNTFDTLKENEAWQKLLGCEVALGTAALKRILHKAYTVDVEMIRPLIRRVFLSALKAKNPNKVILFLDSSVYDNDGAKCRAGVK
CTYKKKEGYHPINLIWDGMYIDTYFQSGHCSTNHDGVAIEMLQEIVPMIRENLGEDIQVIVRMDGGYYDQKIFAACDALKINFICAGKRYSDHKIHANTK
LENFDGVYRKKACTWHYLTFQERRKSWPKEMAYRALFLRPTEENGEALLGLESRIILTNLDVKSCSDQEIIDYDHSRGADELTHRAAKDFASERMPCLDF
HANSLWYSMGIVSFNLFQIFKRNIAGFSWNCYPTTVRRKLFDLAGKIINKGRSLTLKITPWKMRELKFDQIWEKSLTPWVLPVL
AFLQLVLFFADGRESSLNTFDTLKENEAWQKLLGCEVALGTAALKRILHKAYTVDVEMIRPLIRRVFLSALKAKNPNKVILFLDSSVYDNDGAKCRAGVK
CTYKKKEGYHPINLIWDGMYIDTYFQSGHCSTNHDGVAIEMLQEIVPMIRENLGEDIQVIVRMDGGYYDQKIFAACDALKINFICAGKRYSDHKIHANTK
LENFDGVYRKKACTWHYLTFQERRKSWPKEMAYRALFLRPTEENGEALLGLESRIILTNLDVKSCSDQEIIDYDHSRGADELTHRAAKDFASERMPCLDF
HANSLWYSMGIVSFNLFQIFKRNIAGFSWNCYPTTVRRKLFDLAGKIINKGRSLTLKITPWKMRELKFDQIWEKSLTPWVLPVL
Blast result :
Comments
ISLar2 is 43% aa similar to ISEnca1.
References
1] ISfinder annotation (2009)
2] Giovannoni,S., Cho,J.-C., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2007) Direct submission GenBank.
2] Giovannoni,S., Cho,J.-C., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2007) Direct submission GenBank.