ISCku9

  • Family IS1380
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CT573071 ND Candidatus Kuenenia
Candidatus Kuenenia stuttgartiensis
DNA section
IS Length : 1859 bp

Ends


IR Length : 21/27

IRL : CCTAAAACAAGCGTAATTTTTTAATCTGAGAGAGTTAAAGTAGGTTGAAA
IRR : CCTAAAACAAGCGCGATTTAACACTCTACAGACAATGGGATAATATTTTG

Insertion site


Left flankDirect repeatRight flankDR Length
TGATATTACAACTAATTATGGGAAAA6

DNA sequence

CCTAAAACAAGCGTAATTTTTTAATCTGAGAGAGTTAAAGTAGGTTGAAAAGCCTGAATTTACTGGTTAAGATAGTGATATGTAAAAATTCCGATAACCA
GAAAAAGGGGCATTTCAGATGAGTAAAATAGCAGCAAGAAAATATAACAAGATATTGAGAAGAAAGAAACGGAAAATAGAGAAACGGTTAAAGAGAAAGC
AATGGGGAGATCAGAAGCATCCGATGTTCACGGCAAAGAACATTCATTACGAGATAGCCGCGAATAGCCAGGCAATTGCCTGTGGTGGTATAGGCGTAAT
CCATCAAATGGCAATAAGAAGTGGATTGGTAAAAGAGATAGACGAGAATCTTGAGTTACTCAAAAGGCATATACCGTATCATGAATCGGATCATATATTG
AATATAGCGTACAATGTGCTTTCAGGGAATGTGCGGTTAGAAGACATAGAGTTGCATCGGCAAGACAGCGGCTATTTGGATGCGTTGGGTGCAGAGCGGA
TACCTGATCCTACAACGGCGGGAGATTTTACAAGGCGGTTTGACCGTAATGATATTGAGAAGCTGATGGAGATTATCAACAGGGTACGAGAGCGTGTGTG
GGAGGAAGGGCGGAAAGAGGCATTGGAAGAAGCGTTGATAGATGTGGATGGAACGATAGTGGGGACATACGGAGAATGTAAAGAGGGGATGGATATATCG
TACAAGGGGATATGGGGATATACGCCACTCATTGTGTCATTGGCAAACACGAAGGAAGTGTTGTATATTGAGAATCGTCCGGGAAACGTACCGAGCCATA
GCGGCGCAGTGGAGTGGATAGACAGGGCAATAAACTTGGTAAAACCACATGCGGAGAGGGTTTGTTTAAGGGGAGACACAGACTTTTCATTGACAGGGAA
TTTTGATCGCTGGTCAGAGCAAGTGGACTTTGTGTTTGGGATGGATGCACGAGGTGGGCTAATAAAACTAGCCGGGGAGTTGCCGGAAGATGCATGGAAA
GAACTAAAGCGTAAACCGAAATACAAGGTAAAAACAGAGGAAAGGCAGAAACCTGAAAATATAAAAGAACGGATAGTTAAAGAACGTGAATACAAGAATA
TTCGGTTAGAGAGTGAGCAAGTGGCTGAGTTTGAATATCGGCCTGAGAAATGCAAGAAGAGTTATAGGGTGATAGTGCTGAGAAAAAATCTGAGTGTGGA
AAAAGGTCAGAAACGATTATTTGACGACATTCGTTATTTTTTCTATATAACGACACTGAGGGACAGGACGGCAGAAAAGATAGTAGAGTTGGCAAACGGT
AGGTGTGATCAGGAGAATGTAATAGAGCAGTTGAAGAACGGGGTAAATGCGATGAAGTTGCCTGTAAGGGATTTGGAAAGCAACTGGGCATACATGGTAA
TAGCGTCATTGGCTTGGAACTTCAAGGCATGGTTTGGCATGTTGATGCCAAATGTAGGAAGGGGAGAGCAGGTGTTAAAGATGGAGTTTCGGCGGTTTCT
CAATACCCTGATGATGATTCCCTGCCAAATAGTGAAGACAGGGCGTAAGATTGTATATCGAATGCTCGGATATAATGACTGGTTAAAGGATTTTTTTGCA
ACGTGGGAACGAATCCGAAGATTAAAACTGTGCATGGAATAGTAGTTTAACAGTAAAAAAGAAATAGAAAGCAGAAGAAAAGCGGGAGCGGTACGTAATC
ACCTTGCAAAAGTATGGTAGTTTTCTCTATCAATAGTAATATTTTTCTTTTTAGTAAGTTTTTTCGCGACGAAACAAACAAAAAATACATTTAGAGACGC
ATAATAGTCCAAAATATTATCCCATTGTCTGTAGAGTGTTAAATCGCGCTTGTTTTAGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1524 bp507 aa1191642+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSKIAARKYNKILRRKKRKIEKRLKRKQWGDQKHPMFTAKNIHYEIAANSQAIACGGIGVIHQMAIRSGLVKEIDENLELLKRHIPYHESDHILNIAYNV
LSGNVRLEDIELHRQDSGYLDALGAERIPDPTTAGDFTRRFDRNDIEKLMEIINRVRERVWEEGRKEALEEALIDVDGTIVGTYGECKEGMDISYKGIWG
YTPLIVSLANTKEVLYIENRPGNVPSHSGAVEWIDRAINLVKPHAERVCLRGDTDFSLTGNFDRWSEQVDFVFGMDARGGLIKLAGELPEDAWKELKRKP
KYKVKTEERQKPENIKERIVKEREYKNIRLESEQVAEFEYRPEKCKKSYRVIVLRKNLSVEKGQKRLFDDIRYFFYITTLRDRTAEKIVELANGRCDQEN
VIEQLKNGVNAMKLPVRDLESNWAYMVIASLAWNFKAWFGMLMPNVGRGEQVLKMEFRRFLNTLMMIPCQIVKTGRKIVYRMLGYNDWLKDFFATWERIR
RLKLCME

 

Blast result :
Comments
ISCku9 is 43% aa siilar to ISBha1.
References
1] ISfinder annotation (2009)
2] Strous,M., Pelletier,E., Mangenot,S., Rattei,T., Lehner,A., Taylor,M.W., Horn,M., Daims,H., Bartol-Mavel,D., Wincker,P., Barbe,V., Fonknechten,N., Vallenet,D., Segurens,B., Schenowitz-Truong,C., Medigue,C., Collingro,A., Snel,B., Dutilh,B.E., Op den Camp,H.J., van der Drift,C., Cirpus,I., van de Pas-Schoonen,K.T., Harhangi,H.R., van Niftrik,L., Schmid,M., Keltjens,J., van de Vossenberg,J., Kartal,B., Meier,H., Frishman,D., Huynen,M.A., Mewes,H.W., Weissenbach,J., Jetten,M.S., Wagner,M. and Le Paslier,D. ( 2006) Nature 440 (7085), 790-794