ISDau1
- Family IS1380
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_012108 | ND | Desulfobacterium autotrophicum | Desulfobacterium autotrophicum HRM2 |
DNA section
IS Length : 1639 bp
Ends
IR Length : 13/16
IRL : CCTAAACAATGCAAGCGATATATGGTTTTTTTGAGTAAAAAGCTTCTATA
IRR : CCTAAAAGTTGCAAGCCCTTACTGGAGCCCTGAGAGTATAGGCCAAGGGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AACGGTTCCT | TTCAA | TTTTAAGGTG | 5 |
DNA sequence
CCTAAACAATGCAAGCGATATATGGTTTTTTTGAGTAAAAAGCTTCTATAATTGTCATAAATACAGTACTATAGCCCTATAAGTCATCACTTTATGGAGG
GCACCGATATGATGAGGAAGTTTCATACACAATTTACTGAAAAAAACCTTACGGGCAACGCAGGGCTGATCAATCTTGGCAGGTTCGCGGAAAAGTTAGG
CCTTCCAAAAATATTGACCAACCATCTCACCATCGAACGTGCGCCCAACGCAGACTACCAGGTGAGCGATGTGGTGATGATGCTCGCTTTTGGTGTCCTG
GTCGGGGTCAAACATATGAGTCATATGGCAATTCTCAGGACTGACGAGGTTATCCGTGCCCTTTTTAAATGGGACAATTTTCCTGTCAGCACCTCCTTCG
GGCGTATTTTTAAACTTTTTACCCAGAACCATTGCAAGGAATTATCCGATGCTGAATCGGTCGCCAGGAATAAAGTGTGGAACAAGAAATGGTTTGGGAA
AGTCACCCTTGATATGGACTCATCTGTTCGAGGGGTGTATGGCACCCAGGAAGGAGCGGCCAAAGGGTACAACTCAAGGAAAAAAGGTCAGCGAAGTTAT
CATCCCCTACTGTGCTTTGTTGCAGAAAACAGAGAGTGCCTTCATAATTGGTTCCGTACTGGGAGTGCCTATTCTGCCAATGGCAGTGTTGAATTTATGA
AGGAATGTTTTGCCAAGTTGCCCAAGCGGGTTTGGAAAGTATTTGTTCGAGCTGATAGCGCTTTTTTTGATGGAGCACTTCTGGACCTGCTTGAGTCAAA
AAGCTGCCAATATTTAATCAAGGTCAATCTTAGGGGACTCACCACCCTTTTGGAAAAGCAGTCCTGGCGAAAGATTGCGCGTAGACCAGGATATGAAAGC
ACTCAATTCGAATATAAATGCTCAGGATGGTCAAAACCCAGGACCTTTGTTGCTGTAAGGCTATTAACGGAAGTTATAATCGAAGAAGATGCCCTGTTCG
AATCAAAAAAATATGATTATGATTATTTTTGCTATATTTCAAATTTAAAGCTTAGCCCTTGGGCAACCCATAAAAGATATGGGAAACGAGCCACGAGCGA
GAACTGGATTGAGTGGTGCAAAAATCAAATGTCATCGGGTAGTATCTTGACGCAGGAATTTTGGGCAAACTCGGCCATCTTTCAAACTTCCATTCTGGCA
TACAATCTGTTGGTTTGGATGATGTGGCTGAATAATGAAGATGGTTTCAATGAAGAACCAAACACCATTCGAATGTGCCTGATCCATGTTCCGGCACGAT
TAATGACCCGGAGCCGGCAGTGGATCGTGCGATTGTCAAAGAACTATTTTTACAAGGACAGATGGCAGCAGTTGGAAGAATCCATAATGCAATTGGATTT
TGACTGACAGATCCACCAGCACAAAAAAACATAGAAGGAGGAAGCGTCAATGAACACGTGCGTCTGAGTGTTGCTTGTAAGGGCTATGGATAGGCACAGG
TAGCAAAAAAAAACATACCCGCATAGCCGATGCAGGCAAGATTTTCTAAAAAATTGCTCCCCCTTAGCTCAAAAATCCGGCTGAGGGTGCCCCTTGGCCT
ATACTCTCAGGGCTCCAGTAAGGGCTTGCAACTTTTAGG
GCACCGATATGATGAGGAAGTTTCATACACAATTTACTGAAAAAAACCTTACGGGCAACGCAGGGCTGATCAATCTTGGCAGGTTCGCGGAAAAGTTAGG
CCTTCCAAAAATATTGACCAACCATCTCACCATCGAACGTGCGCCCAACGCAGACTACCAGGTGAGCGATGTGGTGATGATGCTCGCTTTTGGTGTCCTG
GTCGGGGTCAAACATATGAGTCATATGGCAATTCTCAGGACTGACGAGGTTATCCGTGCCCTTTTTAAATGGGACAATTTTCCTGTCAGCACCTCCTTCG
GGCGTATTTTTAAACTTTTTACCCAGAACCATTGCAAGGAATTATCCGATGCTGAATCGGTCGCCAGGAATAAAGTGTGGAACAAGAAATGGTTTGGGAA
AGTCACCCTTGATATGGACTCATCTGTTCGAGGGGTGTATGGCACCCAGGAAGGAGCGGCCAAAGGGTACAACTCAAGGAAAAAAGGTCAGCGAAGTTAT
CATCCCCTACTGTGCTTTGTTGCAGAAAACAGAGAGTGCCTTCATAATTGGTTCCGTACTGGGAGTGCCTATTCTGCCAATGGCAGTGTTGAATTTATGA
AGGAATGTTTTGCCAAGTTGCCCAAGCGGGTTTGGAAAGTATTTGTTCGAGCTGATAGCGCTTTTTTTGATGGAGCACTTCTGGACCTGCTTGAGTCAAA
AAGCTGCCAATATTTAATCAAGGTCAATCTTAGGGGACTCACCACCCTTTTGGAAAAGCAGTCCTGGCGAAAGATTGCGCGTAGACCAGGATATGAAAGC
ACTCAATTCGAATATAAATGCTCAGGATGGTCAAAACCCAGGACCTTTGTTGCTGTAAGGCTATTAACGGAAGTTATAATCGAAGAAGATGCCCTGTTCG
AATCAAAAAAATATGATTATGATTATTTTTGCTATATTTCAAATTTAAAGCTTAGCCCTTGGGCAACCCATAAAAGATATGGGAAACGAGCCACGAGCGA
GAACTGGATTGAGTGGTGCAAAAATCAAATGTCATCGGGTAGTATCTTGACGCAGGAATTTTGGGCAAACTCGGCCATCTTTCAAACTTCCATTCTGGCA
TACAATCTGTTGGTTTGGATGATGTGGCTGAATAATGAAGATGGTTTCAATGAAGAACCAAACACCATTCGAATGTGCCTGATCCATGTTCCGGCACGAT
TAATGACCCGGAGCCGGCAGTGGATCGTGCGATTGTCAAAGAACTATTTTTACAAGGACAGATGGCAGCAGTTGGAAGAATCCATAATGCAATTGGATTT
TGACTGACAGATCCACCAGCACAAAAAAACATAGAAGGAGGAAGCGTCAATGAACACGTGCGTCTGAGTGTTGCTTGTAAGGGCTATGGATAGGCACAGG
TAGCAAAAAAAAACATACCCGCATAGCCGATGCAGGCAAGATTTTCTAAAAAATTGCTCCCCCTTAGCTCAAAAATCCGGCTGAGGGTGCCCCTTGGCCT
ATACTCTCAGGGCTCCAGTAAGGGCTTGCAACTTTTAGG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1299 bp | 432 aa | 109 | 1407 | + | No |
Chemistry : DDE
ORF sequence :
MMRKFHTQFTEKNLTGNAGLINLGRFAEKLGLPKILTNHLTIERAPNADYQVSDVVMMLAFGVLVGVKHMSHMAILRTDEVIRALFKWDNFPVSTSFGRI
FKLFTQNHCKELSDAESVARNKVWNKKWFGKVTLDMDSSVRGVYGTQEGAAKGYNSRKKGQRSYHPLLCFVAENRECLHNWFRTGSAYSANGSVEFMKEC
FAKLPKRVWKVFVRADSAFFDGALLDLLESKSCQYLIKVNLRGLTTLLEKQSWRKIARRPGYESTQFEYKCSGWSKPRTFVAVRLLTEVIIEEDALFESK
KYDYDYFCYISNLKLSPWATHKRYGKRATSENWIEWCKNQMSSGSILTQEFWANSAIFQTSILAYNLLVWMMWLNNEDGFNEEPNTIRMCLIHVPARLMT
RSRQWIVRLSKNYFYKDRWQQLEESIMQLDFD
FKLFTQNHCKELSDAESVARNKVWNKKWFGKVTLDMDSSVRGVYGTQEGAAKGYNSRKKGQRSYHPLLCFVAENRECLHNWFRTGSAYSANGSVEFMKEC
FAKLPKRVWKVFVRADSAFFDGALLDLLESKSCQYLIKVNLRGLTTLLEKQSWRKIARRPGYESTQFEYKCSGWSKPRTFVAVRLLTEVIIEEDALFESK
KYDYDYFCYISNLKLSPWATHKRYGKRATSENWIEWCKNQMSSGSILTQEFWANSAIFQTSILAYNLLVWMMWLNNEDGFNEEPNTIRMCLIHVPARLMT
RSRQWIVRLSKNYFYKDRWQQLEESIMQLDFD
Blast result :
Comments
ISDau1 is 50% aa similar to ISEcp1.
References
1] ISfinder annotation (2009)
2] Strittmatter,A.W., Liesegang,H., Rabus,R., Decker,I., Amann,J., Andres,S., Henne,A., Fricke,W.F., Martinez-Arias,R., Bartels,D., Goesmann,A., Krause,L., Puhler,A., Klenk,H.P., Richter,M., Schuler,M., Glockner,F.O., Meyerdierks,A., Gottschalk,G. and Amann,R. Environ. Microbiol. (2009) In press
2] Strittmatter,A.W., Liesegang,H., Rabus,R., Decker,I., Amann,J., Andres,S., Henne,A., Fricke,W.F., Martinez-Arias,R., Bartels,D., Goesmann,A., Krause,L., Puhler,A., Klenk,H.P., Richter,M., Schuler,M., Glockner,F.O., Meyerdierks,A., Gottschalk,G. and Amann,R. Environ. Microbiol. (2009) In press