ISDau1

  • Family IS1380
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_012108 ND Desulfobacterium autotrophicum
Desulfobacterium autotrophicum HRM2
DNA section
IS Length : 1639 bp

Ends


IR Length : 13/16

IRL : CCTAAACAATGCAAGCGATATATGGTTTTTTTGAGTAAAAAGCTTCTATA
IRR : CCTAAAAGTTGCAAGCCCTTACTGGAGCCCTGAGAGTATAGGCCAAGGGG

Insertion site


Left flankDirect repeatRight flankDR Length
AACGGTTCCTTTCAATTTTAAGGTG5

DNA sequence

CCTAAACAATGCAAGCGATATATGGTTTTTTTGAGTAAAAAGCTTCTATAATTGTCATAAATACAGTACTATAGCCCTATAAGTCATCACTTTATGGAGG
GCACCGATATGATGAGGAAGTTTCATACACAATTTACTGAAAAAAACCTTACGGGCAACGCAGGGCTGATCAATCTTGGCAGGTTCGCGGAAAAGTTAGG
CCTTCCAAAAATATTGACCAACCATCTCACCATCGAACGTGCGCCCAACGCAGACTACCAGGTGAGCGATGTGGTGATGATGCTCGCTTTTGGTGTCCTG
GTCGGGGTCAAACATATGAGTCATATGGCAATTCTCAGGACTGACGAGGTTATCCGTGCCCTTTTTAAATGGGACAATTTTCCTGTCAGCACCTCCTTCG
GGCGTATTTTTAAACTTTTTACCCAGAACCATTGCAAGGAATTATCCGATGCTGAATCGGTCGCCAGGAATAAAGTGTGGAACAAGAAATGGTTTGGGAA
AGTCACCCTTGATATGGACTCATCTGTTCGAGGGGTGTATGGCACCCAGGAAGGAGCGGCCAAAGGGTACAACTCAAGGAAAAAAGGTCAGCGAAGTTAT
CATCCCCTACTGTGCTTTGTTGCAGAAAACAGAGAGTGCCTTCATAATTGGTTCCGTACTGGGAGTGCCTATTCTGCCAATGGCAGTGTTGAATTTATGA
AGGAATGTTTTGCCAAGTTGCCCAAGCGGGTTTGGAAAGTATTTGTTCGAGCTGATAGCGCTTTTTTTGATGGAGCACTTCTGGACCTGCTTGAGTCAAA
AAGCTGCCAATATTTAATCAAGGTCAATCTTAGGGGACTCACCACCCTTTTGGAAAAGCAGTCCTGGCGAAAGATTGCGCGTAGACCAGGATATGAAAGC
ACTCAATTCGAATATAAATGCTCAGGATGGTCAAAACCCAGGACCTTTGTTGCTGTAAGGCTATTAACGGAAGTTATAATCGAAGAAGATGCCCTGTTCG
AATCAAAAAAATATGATTATGATTATTTTTGCTATATTTCAAATTTAAAGCTTAGCCCTTGGGCAACCCATAAAAGATATGGGAAACGAGCCACGAGCGA
GAACTGGATTGAGTGGTGCAAAAATCAAATGTCATCGGGTAGTATCTTGACGCAGGAATTTTGGGCAAACTCGGCCATCTTTCAAACTTCCATTCTGGCA
TACAATCTGTTGGTTTGGATGATGTGGCTGAATAATGAAGATGGTTTCAATGAAGAACCAAACACCATTCGAATGTGCCTGATCCATGTTCCGGCACGAT
TAATGACCCGGAGCCGGCAGTGGATCGTGCGATTGTCAAAGAACTATTTTTACAAGGACAGATGGCAGCAGTTGGAAGAATCCATAATGCAATTGGATTT
TGACTGACAGATCCACCAGCACAAAAAAACATAGAAGGAGGAAGCGTCAATGAACACGTGCGTCTGAGTGTTGCTTGTAAGGGCTATGGATAGGCACAGG
TAGCAAAAAAAAACATACCCGCATAGCCGATGCAGGCAAGATTTTCTAAAAAATTGCTCCCCCTTAGCTCAAAAATCCGGCTGAGGGTGCCCCTTGGCCT
ATACTCTCAGGGCTCCAGTAAGGGCTTGCAACTTTTAGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1299 bp432 aa1091407+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MMRKFHTQFTEKNLTGNAGLINLGRFAEKLGLPKILTNHLTIERAPNADYQVSDVVMMLAFGVLVGVKHMSHMAILRTDEVIRALFKWDNFPVSTSFGRI
FKLFTQNHCKELSDAESVARNKVWNKKWFGKVTLDMDSSVRGVYGTQEGAAKGYNSRKKGQRSYHPLLCFVAENRECLHNWFRTGSAYSANGSVEFMKEC
FAKLPKRVWKVFVRADSAFFDGALLDLLESKSCQYLIKVNLRGLTTLLEKQSWRKIARRPGYESTQFEYKCSGWSKPRTFVAVRLLTEVIIEEDALFESK
KYDYDYFCYISNLKLSPWATHKRYGKRATSENWIEWCKNQMSSGSILTQEFWANSAIFQTSILAYNLLVWMMWLNNEDGFNEEPNTIRMCLIHVPARLMT
RSRQWIVRLSKNYFYKDRWQQLEESIMQLDFD

 

Blast result :
Comments
ISDau1 is 50% aa similar to ISEcp1.
References
1] ISfinder annotation (2009)
2] Strittmatter,A.W., Liesegang,H., Rabus,R., Decker,I., Amann,J., Andres,S., Henne,A., Fricke,W.F., Martinez-Arias,R., Bartels,D., Goesmann,A., Krause,L., Puhler,A., Klenk,H.P., Richter,M., Schuler,M., Glockner,F.O., Meyerdierks,A., Gottschalk,G. and Amann,R. Environ. Microbiol. (2009) In press