ISCku8
- Family IS1380
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CT573071 | ND | Candidatus Kuenenia | Candidatus Kuenenia stuttgartiensis |
DNA section
IS Length : 1716 bp
Ends
IR Length : 16
IRL : CCTAAATCCTGCAAACAAGGCAAAGCCTTGTTGCAGGAATAGGATTGAAA
IRR : CCTAAATCCTGCAAACGATTTTCGCAATGCGAAAATCAGTATTTTCCACT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AAACAAATTCTAA | TGATA | AAATGATTTGA | 5 |
TCTTGAAATCCCT | TAATA | TTAAATTATTT | 5 |
TGAAATAGTATCT | TATCAATACCATTAATT | 0 |
DNA sequence
CCTAAATCCTGCAAACAAGGCAAAGCCTTGTTGCAGGAATAGGATTGAAATGGTAGGATTTCCAAGGTATTCGGCGGTATATTGATAACAAAAAACACCT
GAAAGGAGATTCACCATTTCGATGAAGAATATAGCAAAAAAATACAGCAAAAGACAACCGAAAATCAAGGCAGAGATGAGCGGGAAAGGCTTAACGGTAC
ATGCAGGGCTTTTACCGGTATTGAATTTTATGGGTAAGCTGATGTTCCGGGAGAGAGTCCATGAAGCGGTCCATAAGGATCGTGGAGCAAATGCCCGGTA
TCAGTTTGTCGATGCGGTACAAATGGTAGTGATAGGGTTGATAGCAGGGGCGACATCGATGGTAGAGGTGATGAAGGTGTGTACAGATGAGGTATTGAAG
AAGATGTCCGGGTGGAAAGAGGTACCTGTAGATACTACGATAGGACGTATTATGAAGCTGGCGAGTCAGGGAGATATAGTGGAACTGACGGGGGTGATCC
ACCGGTTTAGGGGAAAGATATGGAAGCGTGCGGTGAGATCAGGCCATAAACTCAGGAGTGCTCTTTGCGAAGTATGGATAGATGTTGATTCTACCGTAGA
TGGTGTATATGGGAAACAGGAGGGTGCAGAGGTAGGATATAATCCGCACAAGAAGGGGCAGAAGGCGTATCATCCCTTAATGGCATTTATTGCAGAAACA
AAGGAGGTATTACATAGTTGGTTCCGCTGTGGAAGCGCCTACACGAGTAACGGAGTAGTAGAGTTCATGAAGGAATGTATGGCGTACATGAATAAGGGGG
TAAGGGTGGTATTTCGGGGAGACAGCGGTTTTTTTACCGGAGAATTACTTGAATACCTTGAGTCAATATTGGCGGGATATCTGATTAAGGTAAAGCTGAA
GAATCTGGAAGGATTGCTTGAAGGGCAGAAATGGAATGAGGTGAAAGGGGAGCCAGGATGGGAACAGGCTGAATTTTGGTATCGATGTGCAGGGTGGGAT
CGTGCGAGACGTTTTGTGGCAGTGCGGCAATTGGTCAAAAGAGAAAAGAAATTAGTAGAAGTGTCCGTGTATGAGTATTTTTGTTACGTTACAACGGAGC
GGTTAAGTCCGATGGAAGCGCATCGTTGTTATGGAAAGAGGGCTACCTGCGAGACTTTGATAGAAGAGAGTAAAGGACAGATGAATGCGGGGCACATACG
TACGGGTGAATTTTTGGCCAATGCTGCGCTATTTCAGTGTGCGGTGTTAGCGTATAATCTTTTGAAGTGGATGGGATTGCTCAGTGGTGGAGTGATACAA
AAGTGGGAAGTAAAGACGATGAGACTGTGGTTAATCAGTGTGGCAGGGAAACTGGTGGAGAGAAGCCGGCAGATGACATTAAAATTGCCGGAGAAATTTC
TCCATCAGGAGGAATGGGAAAAGTGGGAACGCATGTCACTGGATGTAGTTTTTCAGTAGAAAACCGACGTTGTATTTCGTTTTTTTAGTCTTTTGAGAGT
GGTAAGTATACCGCAGATGGAGACAGTACATCCCTATCTTGATTTTCATTGCATCAGAGAGCACGTTTCCGACAATTTCCCATGTCTTTTTGTTTAAAGT
AGTACAATAGCGCTACCACAATTGCTAAAAAACGGATATCTGTTATCGCTTTTTGCCAATCTTGGTAGTGGAAAATACTGATTTTCGCATTGCGAAAATC
GTTTGCAGGATTTAGG
GAAAGGAGATTCACCATTTCGATGAAGAATATAGCAAAAAAATACAGCAAAAGACAACCGAAAATCAAGGCAGAGATGAGCGGGAAAGGCTTAACGGTAC
ATGCAGGGCTTTTACCGGTATTGAATTTTATGGGTAAGCTGATGTTCCGGGAGAGAGTCCATGAAGCGGTCCATAAGGATCGTGGAGCAAATGCCCGGTA
TCAGTTTGTCGATGCGGTACAAATGGTAGTGATAGGGTTGATAGCAGGGGCGACATCGATGGTAGAGGTGATGAAGGTGTGTACAGATGAGGTATTGAAG
AAGATGTCCGGGTGGAAAGAGGTACCTGTAGATACTACGATAGGACGTATTATGAAGCTGGCGAGTCAGGGAGATATAGTGGAACTGACGGGGGTGATCC
ACCGGTTTAGGGGAAAGATATGGAAGCGTGCGGTGAGATCAGGCCATAAACTCAGGAGTGCTCTTTGCGAAGTATGGATAGATGTTGATTCTACCGTAGA
TGGTGTATATGGGAAACAGGAGGGTGCAGAGGTAGGATATAATCCGCACAAGAAGGGGCAGAAGGCGTATCATCCCTTAATGGCATTTATTGCAGAAACA
AAGGAGGTATTACATAGTTGGTTCCGCTGTGGAAGCGCCTACACGAGTAACGGAGTAGTAGAGTTCATGAAGGAATGTATGGCGTACATGAATAAGGGGG
TAAGGGTGGTATTTCGGGGAGACAGCGGTTTTTTTACCGGAGAATTACTTGAATACCTTGAGTCAATATTGGCGGGATATCTGATTAAGGTAAAGCTGAA
GAATCTGGAAGGATTGCTTGAAGGGCAGAAATGGAATGAGGTGAAAGGGGAGCCAGGATGGGAACAGGCTGAATTTTGGTATCGATGTGCAGGGTGGGAT
CGTGCGAGACGTTTTGTGGCAGTGCGGCAATTGGTCAAAAGAGAAAAGAAATTAGTAGAAGTGTCCGTGTATGAGTATTTTTGTTACGTTACAACGGAGC
GGTTAAGTCCGATGGAAGCGCATCGTTGTTATGGAAAGAGGGCTACCTGCGAGACTTTGATAGAAGAGAGTAAAGGACAGATGAATGCGGGGCACATACG
TACGGGTGAATTTTTGGCCAATGCTGCGCTATTTCAGTGTGCGGTGTTAGCGTATAATCTTTTGAAGTGGATGGGATTGCTCAGTGGTGGAGTGATACAA
AAGTGGGAAGTAAAGACGATGAGACTGTGGTTAATCAGTGTGGCAGGGAAACTGGTGGAGAGAAGCCGGCAGATGACATTAAAATTGCCGGAGAAATTTC
TCCATCAGGAGGAATGGGAAAAGTGGGAACGCATGTCACTGGATGTAGTTTTTCAGTAGAAAACCGACGTTGTATTTCGTTTTTTTAGTCTTTTGAGAGT
GGTAAGTATACCGCAGATGGAGACAGTACATCCCTATCTTGATTTTCATTGCATCAGAGAGCACGTTTCCGACAATTTCCCATGTCTTTTTGTTTAAAGT
AGTACAATAGCGCTACCACAATTGCTAAAAAACGGATATCTGTTATCGCTTTTTGCCAATCTTGGTAGTGGAAAATACTGATTTTCGCATTGCGAAAATC
GTTTGCAGGATTTAGG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1338 bp | 445 aa | 122 | 1459 | + | No |
Chemistry : DDE
ORF sequence :
MKNIAKKYSKRQPKIKAEMSGKGLTVHAGLLPVLNFMGKLMFRERVHEAVHKDRGANARYQFVDAVQMVVIGLIAGATSMVEVMKVCTDEVLKKMSGWKE
VPVDTTIGRIMKLASQGDIVELTGVIHRFRGKIWKRAVRSGHKLRSALCEVWIDVDSTVDGVYGKQEGAEVGYNPHKKGQKAYHPLMAFIAETKEVLHSW
FRCGSAYTSNGVVEFMKECMAYMNKGVRVVFRGDSGFFTGELLEYLESILAGYLIKVKLKNLEGLLEGQKWNEVKGEPGWEQAEFWYRCAGWDRARRFVA
VRQLVKREKKLVEVSVYEYFCYVTTERLSPMEAHRCYGKRATCETLIEESKGQMNAGHIRTGEFLANAALFQCAVLAYNLLKWMGLLSGGVIQKWEVKTM
RLWLISVAGKLVERSRQMTLKLPEKFLHQEEWEKWERMSLDVVFQ
VPVDTTIGRIMKLASQGDIVELTGVIHRFRGKIWKRAVRSGHKLRSALCEVWIDVDSTVDGVYGKQEGAEVGYNPHKKGQKAYHPLMAFIAETKEVLHSW
FRCGSAYTSNGVVEFMKECMAYMNKGVRVVFRGDSGFFTGELLEYLESILAGYLIKVKLKNLEGLLEGQKWNEVKGEPGWEQAEFWYRCAGWDRARRFVA
VRQLVKREKKLVEVSVYEYFCYVTTERLSPMEAHRCYGKRATCETLIEESKGQMNAGHIRTGEFLANAALFQCAVLAYNLLKWMGLLSGGVIQKWEVKTM
RLWLISVAGKLVERSRQMTLKLPEKFLHQEEWEKWERMSLDVVFQ
Blast result :
Comments
ISCku8 is 50% aa similar ti ISEnca1.
References
1] ISfinder annotation (2009)
2] Strous,M., Pelletier,E., Mangenot,S., Rattei,T., Lehner,A., Taylor,M.W., Horn,M., Daims,H., Bartol-Mavel,D., Wincker,P., Barbe,V., Fonknechten,N., Vallenet,D., Segurens,B., Schenowitz-Truong,C., Medigue,C., Collingro,A., Snel,B., Dutilh,B.E., Op den Camp,H.J., van der Drift,C., Cirpus,I., van de Pas-Schoonen,K.T., Harhangi,H.R., van Niftrik,L., Schmid,M., Keltjens,J., van de Vossenberg,J., Kartal,B., Meier,H., Frishman,D., Huynen,M.A., Mewes,H.W., Weissenbach,J., Jetten,M.S., Wagner,M. and Le Paslier,D. ( 2006) Nature 440 (7085), 790-794
2] Strous,M., Pelletier,E., Mangenot,S., Rattei,T., Lehner,A., Taylor,M.W., Horn,M., Daims,H., Bartol-Mavel,D., Wincker,P., Barbe,V., Fonknechten,N., Vallenet,D., Segurens,B., Schenowitz-Truong,C., Medigue,C., Collingro,A., Snel,B., Dutilh,B.E., Op den Camp,H.J., van der Drift,C., Cirpus,I., van de Pas-Schoonen,K.T., Harhangi,H.R., van Niftrik,L., Schmid,M., Keltjens,J., van de Vossenberg,J., Kartal,B., Meier,H., Frishman,D., Huynen,M.A., Mewes,H.W., Weissenbach,J., Jetten,M.S., Wagner,M. and Le Paslier,D. ( 2006) Nature 440 (7085), 790-794