ISCku8

  • Family IS1380
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CT573071 ND Candidatus Kuenenia
Candidatus Kuenenia stuttgartiensis
DNA section
IS Length : 1716 bp

Ends


IR Length : 16

IRL : CCTAAATCCTGCAAACAAGGCAAAGCCTTGTTGCAGGAATAGGATTGAAA
IRR : CCTAAATCCTGCAAACGATTTTCGCAATGCGAAAATCAGTATTTTCCACT

Insertion site


Left flankDirect repeatRight flankDR Length
AAACAAATTCTAATGATAAAATGATTTGA5
TCTTGAAATCCCTTAATATTAAATTATTT5
TGAAATAGTATCTTATCAATACCATTAATT0

DNA sequence

CCTAAATCCTGCAAACAAGGCAAAGCCTTGTTGCAGGAATAGGATTGAAATGGTAGGATTTCCAAGGTATTCGGCGGTATATTGATAACAAAAAACACCT
GAAAGGAGATTCACCATTTCGATGAAGAATATAGCAAAAAAATACAGCAAAAGACAACCGAAAATCAAGGCAGAGATGAGCGGGAAAGGCTTAACGGTAC
ATGCAGGGCTTTTACCGGTATTGAATTTTATGGGTAAGCTGATGTTCCGGGAGAGAGTCCATGAAGCGGTCCATAAGGATCGTGGAGCAAATGCCCGGTA
TCAGTTTGTCGATGCGGTACAAATGGTAGTGATAGGGTTGATAGCAGGGGCGACATCGATGGTAGAGGTGATGAAGGTGTGTACAGATGAGGTATTGAAG
AAGATGTCCGGGTGGAAAGAGGTACCTGTAGATACTACGATAGGACGTATTATGAAGCTGGCGAGTCAGGGAGATATAGTGGAACTGACGGGGGTGATCC
ACCGGTTTAGGGGAAAGATATGGAAGCGTGCGGTGAGATCAGGCCATAAACTCAGGAGTGCTCTTTGCGAAGTATGGATAGATGTTGATTCTACCGTAGA
TGGTGTATATGGGAAACAGGAGGGTGCAGAGGTAGGATATAATCCGCACAAGAAGGGGCAGAAGGCGTATCATCCCTTAATGGCATTTATTGCAGAAACA
AAGGAGGTATTACATAGTTGGTTCCGCTGTGGAAGCGCCTACACGAGTAACGGAGTAGTAGAGTTCATGAAGGAATGTATGGCGTACATGAATAAGGGGG
TAAGGGTGGTATTTCGGGGAGACAGCGGTTTTTTTACCGGAGAATTACTTGAATACCTTGAGTCAATATTGGCGGGATATCTGATTAAGGTAAAGCTGAA
GAATCTGGAAGGATTGCTTGAAGGGCAGAAATGGAATGAGGTGAAAGGGGAGCCAGGATGGGAACAGGCTGAATTTTGGTATCGATGTGCAGGGTGGGAT
CGTGCGAGACGTTTTGTGGCAGTGCGGCAATTGGTCAAAAGAGAAAAGAAATTAGTAGAAGTGTCCGTGTATGAGTATTTTTGTTACGTTACAACGGAGC
GGTTAAGTCCGATGGAAGCGCATCGTTGTTATGGAAAGAGGGCTACCTGCGAGACTTTGATAGAAGAGAGTAAAGGACAGATGAATGCGGGGCACATACG
TACGGGTGAATTTTTGGCCAATGCTGCGCTATTTCAGTGTGCGGTGTTAGCGTATAATCTTTTGAAGTGGATGGGATTGCTCAGTGGTGGAGTGATACAA
AAGTGGGAAGTAAAGACGATGAGACTGTGGTTAATCAGTGTGGCAGGGAAACTGGTGGAGAGAAGCCGGCAGATGACATTAAAATTGCCGGAGAAATTTC
TCCATCAGGAGGAATGGGAAAAGTGGGAACGCATGTCACTGGATGTAGTTTTTCAGTAGAAAACCGACGTTGTATTTCGTTTTTTTAGTCTTTTGAGAGT
GGTAAGTATACCGCAGATGGAGACAGTACATCCCTATCTTGATTTTCATTGCATCAGAGAGCACGTTTCCGACAATTTCCCATGTCTTTTTGTTTAAAGT
AGTACAATAGCGCTACCACAATTGCTAAAAAACGGATATCTGTTATCGCTTTTTGCCAATCTTGGTAGTGGAAAATACTGATTTTCGCATTGCGAAAATC
GTTTGCAGGATTTAGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1338 bp445 aa1221459+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKNIAKKYSKRQPKIKAEMSGKGLTVHAGLLPVLNFMGKLMFRERVHEAVHKDRGANARYQFVDAVQMVVIGLIAGATSMVEVMKVCTDEVLKKMSGWKE
VPVDTTIGRIMKLASQGDIVELTGVIHRFRGKIWKRAVRSGHKLRSALCEVWIDVDSTVDGVYGKQEGAEVGYNPHKKGQKAYHPLMAFIAETKEVLHSW
FRCGSAYTSNGVVEFMKECMAYMNKGVRVVFRGDSGFFTGELLEYLESILAGYLIKVKLKNLEGLLEGQKWNEVKGEPGWEQAEFWYRCAGWDRARRFVA
VRQLVKREKKLVEVSVYEYFCYVTTERLSPMEAHRCYGKRATCETLIEESKGQMNAGHIRTGEFLANAALFQCAVLAYNLLKWMGLLSGGVIQKWEVKTM
RLWLISVAGKLVERSRQMTLKLPEKFLHQEEWEKWERMSLDVVFQ

 

Blast result :
Comments
ISCku8 is 50% aa similar ti ISEnca1.
References
1] ISfinder annotation (2009)
2] Strous,M., Pelletier,E., Mangenot,S., Rattei,T., Lehner,A., Taylor,M.W., Horn,M., Daims,H., Bartol-Mavel,D., Wincker,P., Barbe,V., Fonknechten,N., Vallenet,D., Segurens,B., Schenowitz-Truong,C., Medigue,C., Collingro,A., Snel,B., Dutilh,B.E., Op den Camp,H.J., van der Drift,C., Cirpus,I., van de Pas-Schoonen,K.T., Harhangi,H.R., van Niftrik,L., Schmid,M., Keltjens,J., van de Vossenberg,J., Kartal,B., Meier,H., Frishman,D., Huynen,M.A., Mewes,H.W., Weissenbach,J., Jetten,M.S., Wagner,M. and Le Paslier,D. ( 2006) Nature 440 (7085), 790-794