ISTps2

  • Family IS1380
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_010321 ND Thermoanaerobacter pseudethanolicus
Thermoanaerobacter pseudethanolicus ATCC 33223
DNA section
IS Length : 1750 bp

Ends


IR Length : 15/16

IRL : CTTGGATTCGGCAAGTGAATTTACGAAATGCCCAAATAGAGCCATTTGAG
IRR : CTTGAATTCGGCAAGTAGCAAGCAAATTAAAAATTCAATTTCCATGAATG

Insertion site


Left flankDirect repeatRight flankDR Length
ATGCCCCATCATGTATTAAATTTACTATTCCAAGGAGGTA0
CCTAATTATTTAAATTTAAATTTAATTTTGTAACTGTAAG0
ATTCACTAAACAATGTTTACTTAAAAAAAGATAGGGAAAT0

DNA sequence

CTTGGATTCGGCAAGTGAATTTACGAAATGCCCAAATAGAGCCATTTGAGGGCTAAATTAAGTGAAAAATTTTTTACAAAAAATATATGGAGATTCCCCT
TTTTCTGATAAAATTTAAGTGTCAAACAAAAACATTAACAGAAAGGAGAATCTCCATAATATGAGTTTAACACTTAATCTTACAAAAGAAAAGGGGTTTT
CAAAATATATTTTGCCAGCAACTTTTGATAATTTTACAGTATCAAACAATGTAACTTTCACCTATATCCAAGCATTTAAAGAAAAAATCGGCTTTAATAA
AATTCTTTCAAGCATATTATCCTTTAAAAAAGCACCAAATGCTGTTTTTCAACCAGCCGAGATTATTGACTTTATGATTGATTCTGTAATTCAAGGGAAT
ACCCGCTTTCTTCACATGGACCAACTAAGATATGATAATGCATACACAGAAATTAAAGGGCATAAAGTTCCCAGCGAAAAAGTATGCAGAGACTTAATTA
AAGCTTTGCCTGAAAGTTCTCTTGAAGAATTAAGACTTATTAACAAGACTTTGCTTTCCTTGCAATCTAAAGGAACGAAACGTGAAGTCATTATGAATTT
TGATGATACAGTTTGTACTATATTTGGAGAGCAGGAAGGTGCTTCAGTAGGTTATAATCCAAGGTACCATGGTCGACCATCTTTCAAAGAGAAAATCGGC
ATTATTGCTAATACTGATGAACTTGTTAATGTTACTCTTGAAGAAGGTAAACATCACACAAATCATGGTTTCTTAGATTTTGTAAAATCTTGCGAAGAAC
AGCTTCCTGAAAATTGGATAATTAAGCGAGTACGCGTTGACCGTGGAGCATTTGACTACGATAATATGCTGTATTTTGAATCTAAAGGTTATGAATATGT
AATGAAAGCTAAAAATCAGGCATGGATCAGATGCTTTATAGACTATGTCAATCAAAGAGAACACCTTTATCCTTGGACTGAAATAGATAAAACCTTTAGT
GTAAATGAAATATATGCAAAAATGCCTAAATGGGATAAAGTACGCAGAATTGTGATTATACGCAAAAAACTGCCACAGCCCAAAACAGGGCAGATTTGTA
TGGATATAGACGAATTCAAATATGAATATCAAGCTATAGTAACAAATATTGAGTACATGACACCTGAAGAAATATTTCATGAATACAACCAACGCTGCGA
CATTGAAAACAAAATAGATGAACTAAAAGAAGGATTTGCTTTTTCAAAAAACAGTCAAAGAAACAAATTTTGCAACGAAATATTTTTGCTTATCAAAATG
ATCGCTTACAATCTCCATAATTGGTTCAAAAGGACTATCTTGCCAGAGTTTATGAGTCATCATGAGATAACCACAATAAGGCGAATATTATATAATGTAC
CTGGTAATCTTGTTGGGAAAGGACGTTATAGGCATATACGTTATCCTAATAATCCGTTTCTTAAAACTGTGATAACGTATATACGAAAAGCACTAATGGT
ATTTTGCTTAACATAGTAAACACATAGAATATACCAAAAAATATACCAAATGATAGAAACCGCCATATCAAGTAGACGGTTAGCTTTGCTATACCTTAAA
AGAGTAAATTAACTGTAAAAAAGGATATAGCTTTTATTCTTTCAATGTAAATATGCAGTTATCAAAGTGCAAAACTTATAACAAAACACCGTTTTTTTTA
CATTCATGGAAATTGAATTTTTAATTTGCTTGCTACTTGCCGAATTCAAG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1356 bp451 aa1611516+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSLTLNLTKEKGFSKYILPATFDNFTVSNNVTFTYIQAFKEKIGFNKILSSILSFKKAPNAVFQPAEIIDFMIDSVIQGNTRFLHMDQLRYDNAYTEIKG
HKVPSEKVCRDLIKALPESSLEELRLINKTLLSLQSKGTKREVIMNFDDTVCTIFGEQEGASVGYNPRYHGRPSFKEKIGIIANTDELVNVTLEEGKHHT
NHGFLDFVKSCEEQLPENWIIKRVRVDRGAFDYDNMLYFESKGYEYVMKAKNQAWIRCFIDYVNQREHLYPWTEIDKTFSVNEIYAKMPKWDKVRRIVII
RKKLPQPKTGQICMDIDEFKYEYQAIVTNIEYMTPEEIFHEYNQRCDIENKIDELKEGFAFSKNSQRNKFCNEIFLLIKMIAYNLHNWFKRTILPEFMSH
HEITTIRRILYNVPGNLVGKGRYRHIRYPNNPFLKTVITYIRKALMVFCLT

 

Blast result :
Comments
ISTps2 is 61% aa similar to ISDre2.
References
1] ISfinder annotation (2009)
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Dalin,E., Tice,H., Pitluck,S., Bruce,D., Goodwin,L., Saunders,E., Brettin,T., Detter,J.C., Han,C., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Lykidis,A., Hemme,C., Fields,M.W., He,Z., Zhou,J. and Richardson,P. (2008) Direct submission GenBank