ISDre3

  • Family IS1380
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_009253 ND Desulfotomaculum reducens
Desulfotomaculum reducens MI-1
DNA section
IS Length : 1834 bp

Ends


IR Length : 18/21

IRL : CTTGGATTCGGAAAGTAACTTTTAGAAATCCTCTAACGTCAAGGCTTCAA
IRR : CTTGAAATCGGAAAGTAGCTTCCCGAGCTTGACTTAATCCCTCAAATAAC

Insertion site


Left flankDirect repeatRight flankDR Length
TTTATTAAGGGTGATTTAATTGAAAAGATATATTT5
TTTTACGACATCAATTTTAACTATTTTAGCAAATA5
TGTTTACAAGATATATTCAAATTATTTAATACTAG5
TCATCACAGATTTTTTTTAAATTTTCTACTTCGTT5
TTCATCAACTTTTTCTTTAAGATTCATGGTGAGCA5
ACAGAGTAAGCTTGTTTAAATGTTTCAAACCAGGG5
AATATGCTAGTTATTTATAATTTAATTAGGCACGGAGCAA0

DNA sequence

CTTGGATTCGGAAAGTAACTTTTAGAAATCCTCTAACGTCAAGGCTTCAAAGTCATTTTTACGTGTAAAAATTTTAGCAAAAAAAAGGGTACACCACTCC
TTAGCTGGAAATGTTTTAGTGACCAAACCAAATCATTCCAAAGGATGGTGACCCTCTAAAATGATGGTATCACAACTTATTACCACAAATCAACTTGAAA
CTATGTCCCGTCAACAACGACGTAACTTGGAACGCAAATACCAAAAGAAATTAAATTCCCTACAACACCAGACTAGCAAAAGCGATCTTCCGCTTAGGTT
TGACAATTCGTCTGTAACCGCTTATGGAAGTTTTGGTATACTAGAGGCTTTTAAGAAGGCTGTTGATTTACCCGGTATGCTTAAACGGGTCTCTCTTAAG
CGGCATCATAACTGTAAATACTCTGATACAGAGTTGTTGGATACGATCATTGATGCCCTCTCATTGGGATTATTGCGGTTTTCTCATATGAATGCTCTAC
AAACTGATCCTGGGTACCAGAAAATTAAGGAAGTAACACAAGTGCCTGACGAGAGCACCTTGCGAAACTTTGTATCTCTTATATGTGAGCAGGAGGCATT
AGACCAATTGTCTCTGGTGAATCAGGAACTGTTATCCTTAAAGGCCAAATGCGACCAATCCCGCGAAGTCTGGCTGGATATTGACGACAGTGTCCTCACT
GTTTTCGGTAAACAGGAGGGATCAAAAGTCGGTTACAATCCCCGGTATCACGGGCGACCTTCCTACAAAGTAAAAGTAGCGTTTATCTCCGGAACTTGCG
AACTGGTCAATGCTGGCTTATATAGTGGGAATGTCGCCAGTAACGGCCAATTTATGGAGTTTCTTAAAGAGACACTAGAGATCTTAGCCAACCAGAATAT
CCTCGTAAAAGGCATACGCATGGATAAAGGTTTTTTTGATGAAGATAACTTCGCCTACCTGGAAGAACAGGGCATTGAGTATATTTGTAAGGCTAAGCTC
ACCAGTAATATGAAAAAAGTCATTAAATACCTTGATGATCAGGAACGATGGCAGCCTTTGAGCAACCACTACGCTGCAGCAGAAATTACTCTTCCATTGC
CTAAATGGTCCAAAGCCCGCAGGTTTGTATTTATCCGTGAAACTCAAGAACCAAAGGTATCTGGTGAGCAACTTAACTTTGACCTAAAGACATTTGATTA
CCAAGTGATAATTACTTCTAGCGACGAGTACAACCCAGAGGAGGTATGGCACCAATACAATAAGCGTTGCAATATTGAAAACAAAATTGATGAACTCAAG
GTTGGTCTAGGCTTTGAAAAAATGAGTCAGGCAGAGTTGGATCGAAATATAGCCTTTATGTGGCTCAAAGTATTATCGTATAACATTCTCAACTGGTTTC
GCTTGGTCTTATTGGATGGCAAAGACAGTCGTGCTGAAGTGCCAACTATCCGCCGCAAAATACTGAATGTACCTGGGAACATTGTAGGCAACGACCGTTA
CCGCCATATAAAGTTAGCCCCTAATCCCTGGCTACAAAAGGTTTTGAAAAATGCCAAGGAAAAACTACAAGAATTTCTCTGCACACAGGCATGGGTTGCA
GTAAGTTCCGGTTAAACAAACATCGGACGACCTAAATATCTGGTGTCACTGATCCCCCAAAAGGGGTCTTATTAACTGTACCCTAAAACCTAGCCTTTAT
TGGGGTACTTAGGAGTAATACCATATTCCAGACGCCAAGAATTTCAGAGACCATAAAAACAGTGGTTTAATGCCCTAAAATTTGGTTATTTGAGGGATTA
AGTCAAGCTCGGGAAGCTACTTTCCGATTTCAAG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1455 bp484 aa1611615+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MMVSQLITTNQLETMSRQQRRNLERKYQKKLNSLQHQTSKSDLPLRFDNSSVTAYGSFGILEAFKKAVDLPGMLKRVSLKRHHNCKYSDTELLDTIIDAL
SLGLLRFSHMNALQTDPGYQKIKEVTQVPDESTLRNFVSLICEQEALDQLSLVNQELLSLKAKCDQSREVWLDIDDSVLTVFGKQEGSKVGYNPRYHGRP
SYKVKVAFISGTCELVNAGLYSGNVASNGQFMEFLKETLEILANQNILVKGIRMDKGFFDEDNFAYLEEQGIEYICKAKLTSNMKKVIKYLDDQERWQPL
SNHYAAAEITLPLPKWSKARRFVFIRETQEPKVSGEQLNFDLKTFDYQVIITSSDEYNPEEVWHQYNKRCNIENKIDELKVGLGFEKMSQAELDRNIAFM
WLKVLSYNILNWFRLVLLDGKDSRAEVPTIRRKILNVPGNIVGNDRYRHIKLAPNPWLQKVLKNAKEKLQEFLCTQAWVAVSSG

 

Blast result :
Comments
ISDre3 is 95% aa similar to ISDre2.
References
1] ISfinder annotation (2009)
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Sims,D., Brettin,T., Bruce,D., Han,C., Tapia,R., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Tebo,B.M. and Richardson,P. (2007) Direct submission GenBank