ISDre3
- Family IS1380
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_009253 | ND | Desulfotomaculum reducens | Desulfotomaculum reducens MI-1 |
DNA section
IS Length : 1834 bp
Ends
IR Length : 18/21
IRL : CTTGGATTCGGAAAGTAACTTTTAGAAATCCTCTAACGTCAAGGCTTCAA
IRR : CTTGAAATCGGAAAGTAGCTTCCCGAGCTTGACTTAATCCCTCAAATAAC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTTATTAAGGGTGAT | TTAAT | TGAAAAGATATATTT | 5 |
TTTTACGACATCAAT | TTTAA | CTATTTTAGCAAATA | 5 |
TGTTTACAAGATATA | TTCAA | ATTATTTAATACTAG | 5 |
TCATCACAGATTTTT | TTTAA | ATTTTCTACTTCGTT | 5 |
TTCATCAACTTTTTC | TTTAA | GATTCATGGTGAGCA | 5 |
ACAGAGTAAGCTTGT | TTAAA | TGTTTCAAACCAGGG | 5 |
AATATGCTAGTTATTTATAA | TTTAATTAGGCACGGAGCAA | 0 |
DNA sequence
CTTGGATTCGGAAAGTAACTTTTAGAAATCCTCTAACGTCAAGGCTTCAAAGTCATTTTTACGTGTAAAAATTTTAGCAAAAAAAAGGGTACACCACTCC
TTAGCTGGAAATGTTTTAGTGACCAAACCAAATCATTCCAAAGGATGGTGACCCTCTAAAATGATGGTATCACAACTTATTACCACAAATCAACTTGAAA
CTATGTCCCGTCAACAACGACGTAACTTGGAACGCAAATACCAAAAGAAATTAAATTCCCTACAACACCAGACTAGCAAAAGCGATCTTCCGCTTAGGTT
TGACAATTCGTCTGTAACCGCTTATGGAAGTTTTGGTATACTAGAGGCTTTTAAGAAGGCTGTTGATTTACCCGGTATGCTTAAACGGGTCTCTCTTAAG
CGGCATCATAACTGTAAATACTCTGATACAGAGTTGTTGGATACGATCATTGATGCCCTCTCATTGGGATTATTGCGGTTTTCTCATATGAATGCTCTAC
AAACTGATCCTGGGTACCAGAAAATTAAGGAAGTAACACAAGTGCCTGACGAGAGCACCTTGCGAAACTTTGTATCTCTTATATGTGAGCAGGAGGCATT
AGACCAATTGTCTCTGGTGAATCAGGAACTGTTATCCTTAAAGGCCAAATGCGACCAATCCCGCGAAGTCTGGCTGGATATTGACGACAGTGTCCTCACT
GTTTTCGGTAAACAGGAGGGATCAAAAGTCGGTTACAATCCCCGGTATCACGGGCGACCTTCCTACAAAGTAAAAGTAGCGTTTATCTCCGGAACTTGCG
AACTGGTCAATGCTGGCTTATATAGTGGGAATGTCGCCAGTAACGGCCAATTTATGGAGTTTCTTAAAGAGACACTAGAGATCTTAGCCAACCAGAATAT
CCTCGTAAAAGGCATACGCATGGATAAAGGTTTTTTTGATGAAGATAACTTCGCCTACCTGGAAGAACAGGGCATTGAGTATATTTGTAAGGCTAAGCTC
ACCAGTAATATGAAAAAAGTCATTAAATACCTTGATGATCAGGAACGATGGCAGCCTTTGAGCAACCACTACGCTGCAGCAGAAATTACTCTTCCATTGC
CTAAATGGTCCAAAGCCCGCAGGTTTGTATTTATCCGTGAAACTCAAGAACCAAAGGTATCTGGTGAGCAACTTAACTTTGACCTAAAGACATTTGATTA
CCAAGTGATAATTACTTCTAGCGACGAGTACAACCCAGAGGAGGTATGGCACCAATACAATAAGCGTTGCAATATTGAAAACAAAATTGATGAACTCAAG
GTTGGTCTAGGCTTTGAAAAAATGAGTCAGGCAGAGTTGGATCGAAATATAGCCTTTATGTGGCTCAAAGTATTATCGTATAACATTCTCAACTGGTTTC
GCTTGGTCTTATTGGATGGCAAAGACAGTCGTGCTGAAGTGCCAACTATCCGCCGCAAAATACTGAATGTACCTGGGAACATTGTAGGCAACGACCGTTA
CCGCCATATAAAGTTAGCCCCTAATCCCTGGCTACAAAAGGTTTTGAAAAATGCCAAGGAAAAACTACAAGAATTTCTCTGCACACAGGCATGGGTTGCA
GTAAGTTCCGGTTAAACAAACATCGGACGACCTAAATATCTGGTGTCACTGATCCCCCAAAAGGGGTCTTATTAACTGTACCCTAAAACCTAGCCTTTAT
TGGGGTACTTAGGAGTAATACCATATTCCAGACGCCAAGAATTTCAGAGACCATAAAAACAGTGGTTTAATGCCCTAAAATTTGGTTATTTGAGGGATTA
AGTCAAGCTCGGGAAGCTACTTTCCGATTTCAAG
TTAGCTGGAAATGTTTTAGTGACCAAACCAAATCATTCCAAAGGATGGTGACCCTCTAAAATGATGGTATCACAACTTATTACCACAAATCAACTTGAAA
CTATGTCCCGTCAACAACGACGTAACTTGGAACGCAAATACCAAAAGAAATTAAATTCCCTACAACACCAGACTAGCAAAAGCGATCTTCCGCTTAGGTT
TGACAATTCGTCTGTAACCGCTTATGGAAGTTTTGGTATACTAGAGGCTTTTAAGAAGGCTGTTGATTTACCCGGTATGCTTAAACGGGTCTCTCTTAAG
CGGCATCATAACTGTAAATACTCTGATACAGAGTTGTTGGATACGATCATTGATGCCCTCTCATTGGGATTATTGCGGTTTTCTCATATGAATGCTCTAC
AAACTGATCCTGGGTACCAGAAAATTAAGGAAGTAACACAAGTGCCTGACGAGAGCACCTTGCGAAACTTTGTATCTCTTATATGTGAGCAGGAGGCATT
AGACCAATTGTCTCTGGTGAATCAGGAACTGTTATCCTTAAAGGCCAAATGCGACCAATCCCGCGAAGTCTGGCTGGATATTGACGACAGTGTCCTCACT
GTTTTCGGTAAACAGGAGGGATCAAAAGTCGGTTACAATCCCCGGTATCACGGGCGACCTTCCTACAAAGTAAAAGTAGCGTTTATCTCCGGAACTTGCG
AACTGGTCAATGCTGGCTTATATAGTGGGAATGTCGCCAGTAACGGCCAATTTATGGAGTTTCTTAAAGAGACACTAGAGATCTTAGCCAACCAGAATAT
CCTCGTAAAAGGCATACGCATGGATAAAGGTTTTTTTGATGAAGATAACTTCGCCTACCTGGAAGAACAGGGCATTGAGTATATTTGTAAGGCTAAGCTC
ACCAGTAATATGAAAAAAGTCATTAAATACCTTGATGATCAGGAACGATGGCAGCCTTTGAGCAACCACTACGCTGCAGCAGAAATTACTCTTCCATTGC
CTAAATGGTCCAAAGCCCGCAGGTTTGTATTTATCCGTGAAACTCAAGAACCAAAGGTATCTGGTGAGCAACTTAACTTTGACCTAAAGACATTTGATTA
CCAAGTGATAATTACTTCTAGCGACGAGTACAACCCAGAGGAGGTATGGCACCAATACAATAAGCGTTGCAATATTGAAAACAAAATTGATGAACTCAAG
GTTGGTCTAGGCTTTGAAAAAATGAGTCAGGCAGAGTTGGATCGAAATATAGCCTTTATGTGGCTCAAAGTATTATCGTATAACATTCTCAACTGGTTTC
GCTTGGTCTTATTGGATGGCAAAGACAGTCGTGCTGAAGTGCCAACTATCCGCCGCAAAATACTGAATGTACCTGGGAACATTGTAGGCAACGACCGTTA
CCGCCATATAAAGTTAGCCCCTAATCCCTGGCTACAAAAGGTTTTGAAAAATGCCAAGGAAAAACTACAAGAATTTCTCTGCACACAGGCATGGGTTGCA
GTAAGTTCCGGTTAAACAAACATCGGACGACCTAAATATCTGGTGTCACTGATCCCCCAAAAGGGGTCTTATTAACTGTACCCTAAAACCTAGCCTTTAT
TGGGGTACTTAGGAGTAATACCATATTCCAGACGCCAAGAATTTCAGAGACCATAAAAACAGTGGTTTAATGCCCTAAAATTTGGTTATTTGAGGGATTA
AGTCAAGCTCGGGAAGCTACTTTCCGATTTCAAG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1455 bp | 484 aa | 161 | 1615 | + | No |
Chemistry : DDE
ORF sequence :
MMVSQLITTNQLETMSRQQRRNLERKYQKKLNSLQHQTSKSDLPLRFDNSSVTAYGSFGILEAFKKAVDLPGMLKRVSLKRHHNCKYSDTELLDTIIDAL
SLGLLRFSHMNALQTDPGYQKIKEVTQVPDESTLRNFVSLICEQEALDQLSLVNQELLSLKAKCDQSREVWLDIDDSVLTVFGKQEGSKVGYNPRYHGRP
SYKVKVAFISGTCELVNAGLYSGNVASNGQFMEFLKETLEILANQNILVKGIRMDKGFFDEDNFAYLEEQGIEYICKAKLTSNMKKVIKYLDDQERWQPL
SNHYAAAEITLPLPKWSKARRFVFIRETQEPKVSGEQLNFDLKTFDYQVIITSSDEYNPEEVWHQYNKRCNIENKIDELKVGLGFEKMSQAELDRNIAFM
WLKVLSYNILNWFRLVLLDGKDSRAEVPTIRRKILNVPGNIVGNDRYRHIKLAPNPWLQKVLKNAKEKLQEFLCTQAWVAVSSG
SLGLLRFSHMNALQTDPGYQKIKEVTQVPDESTLRNFVSLICEQEALDQLSLVNQELLSLKAKCDQSREVWLDIDDSVLTVFGKQEGSKVGYNPRYHGRP
SYKVKVAFISGTCELVNAGLYSGNVASNGQFMEFLKETLEILANQNILVKGIRMDKGFFDEDNFAYLEEQGIEYICKAKLTSNMKKVIKYLDDQERWQPL
SNHYAAAEITLPLPKWSKARRFVFIRETQEPKVSGEQLNFDLKTFDYQVIITSSDEYNPEEVWHQYNKRCNIENKIDELKVGLGFEKMSQAELDRNIAFM
WLKVLSYNILNWFRLVLLDGKDSRAEVPTIRRKILNVPGNIVGNDRYRHIKLAPNPWLQKVLKNAKEKLQEFLCTQAWVAVSSG
Blast result :
Comments
ISDre3 is 95% aa similar to ISDre2.
References
1] ISfinder annotation (2009)
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Sims,D., Brettin,T., Bruce,D., Han,C., Tapia,R., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Tebo,B.M. and Richardson,P. (2007) Direct submission GenBank
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Sims,D., Brettin,T., Bruce,D., Han,C., Tapia,R., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Tebo,B.M. and Richardson,P. (2007) Direct submission GenBank