ISRgn3

  • Family IS1380
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Ruminococcus gnavus
Ruminococcus gnavus ATCC 29149
DNA section
IS Length : 1658 bp

Ends


IR Length : 14/16

IRL : CCTGGATTATTCACGGCGTAGCCGTGAAAGTGGCTGAAAGCCACATAGTT
IRR : CCTAAATTATTCACGGAACAGTATCTGAAGCGATAACTGTGCCATGAATC

Insertion site


Left flankDirect repeatRight flankDR Length
ATTATACAAAATAAATATTCAGAAA5

DNA sequence

CCTGGATTATTCACGGCGTAGCCGTGAAAGTGGCTGAAAGCCACATAGTTACTATATTTTAATTGAATATTGCTTTTCACTTATCAAGTGAATAAAAAAA
GAGCATCCGTTTGTGGTAAAATTAAGGTGTTCAAAGCCATTAATAATACAAACAAAGGAGCCCTTCATGAGTATTGTAAACACCTTATCACTAGAAAGCA
ATAGACAGATTAAAATAAATTTTGATGGAGGAGATTTATCCTCCGATGCAGGCCTGCTTCTTATCAAAGAATTCGTAAGTAAACTTGACATTGATAAACT
TTTCAGTCGCTCATTTAAGACTAATGATTCTGCATCATTTAGATATCACACTGACAAGGAGAATCTCCTTCAGATAATCTATATGATTATTGCAGGTTAT
TTTGAAGATGATGCTTCAGATGAACTTACAAATGACCCAGTATTTAAAGCAGTACTAAATAAAGATGCTTTAGCATCACAACCTACGGTATCAAGATTCT
TTAACCGTATGGATGAAGATACTTTAAACCAATTCCTTACGATTGGCAGAATACTTCGAAAAAGAGTTTACAGTATTCAGATGCCACAGGCTGTTATTCT
GGATCTGGATTCCACTCTTCTTGATGCATACGGTAAACAGGAAGGCAGAGCCTTTAACTTTCATTATCGGAGCAATGGATACCATCCACTTGTCTGTTAT
GATGGAATGACTGGGGATCTGATAAAAATCCAACTTCGTGATGGAACACAGTATTCCTGCACTGGAGTGGTTGACTTCCTGCAACTGATACTTGATGAAT
ATCTGAATGATTATCCAACAATCCAAATTCTGCTTCGGGGTGACAGCGGTTTTGCTACGCCTGACCTTTACAAGCAGTGCGAGGAAAATGGCACAAGCTA
TGTCATCCGGCTGAAGGAGAATGGTATTCTCCGTGAAAAAGCATCCCATCTTGTGGATGAGCTTGATGAAATCACCAGGAATAACAAAGTTGATTATGCG
GTAGTTTATGGTGAATTCATGTACAAAGCAGGTCCATGGCCTTATGAAAGGCGTGTGGTTTGCAAGGTTGAAAAGCCGGAAAACCAGATGGTTTACATGT
ACACATTTGTTGTCACAAACATGGATTCCTCACCAGAGTATCTCATAAAATTTTACTGCAAAAGAGGACGGATGGAAAACTTCATCAAAGAAAGCAAATC
TGGTTTTGATTTCGCTTCTGTAAGTAGCCATGCTAGAATCGTAAATGCCAACAGACTTCAGGTACACGCTCTTGCGTATAACATATTTAATTGGTTTAGA
CGATTGGCGTTATCAGCAAACATGCGAAAACAACGCATAGATACCGTCCGTTTAAAACTGCTGAAGATTGCTGCAAAAATAATTCGTTCAGCAAGATATA
TCACATTCAAGCTGTGCAGTAGCTGCCCTTATAAGAATGAATTCTATGAGACACTTTCAAATATCGGTAAGCTGAATGTACAGCTGGAATAGCAACTATT
AACGAACCTTGATAGCTTAACAATTGCACTCTGAACTCTGCCACAGGGATTTTATACCCTTTTGACGGGTTAATTGAGTGATGTTATGGCTGCATGGATC
AATTTTTAGATTCATGGCACAGTTATCGCTTCAGATACTGTTCCGTGAATAATTTAGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1326 bp441 aa1671492+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSIVNTLSLESNRQIKINFDGGDLSSDAGLLLIKEFVSKLDIDKLFSRSFKTNDSASFRYHTDKENLLQIIYMIIAGYFEDDASDELTNDPVFKAVLNKD
ALASQPTVSRFFNRMDEDTLNQFLTIGRILRKRVYSIQMPQAVILDLDSTLLDAYGKQEGRAFNFHYRSNGYHPLVCYDGMTGDLIKIQLRDGTQYSCTG
VVDFLQLILDEYLNDYPTIQILLRGDSGFATPDLYKQCEENGTSYVIRLKENGILREKASHLVDELDEITRNNKVDYAVVYGEFMYKAGPWPYERRVVCK
VEKPENQMVYMYTFVVTNMDSSPEYLIKFYCKRGRMENFIKESKSGFDFASVSSHARIVNANRLQVHALAYNIFNWFRRLALSANMRKQRIDTVRLKLLK
IAAKIIRSARYITFKLCSSCPYKNEFYETLSNIGKLNVQLE

 

Blast result :
Comments
ISRgn3 is 52% aa similar to ISSpn5.
References
1] ISfinder annotation (2005)
2] Sudarsanam,P., Ley,R., Guruge,J., Turnbaugh,P.J., Mahowald,M., Liep,D. and Gordon,J. (2007) Direct submission GenBank.