ISRgn3
- Family IS1380
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Ruminococcus gnavus | Ruminococcus gnavus ATCC 29149 |
DNA section
IS Length : 1658 bp
Ends
IR Length : 14/16
IRL : CCTGGATTATTCACGGCGTAGCCGTGAAAGTGGCTGAAAGCCACATAGTT
IRR : CCTAAATTATTCACGGAACAGTATCTGAAGCGATAACTGTGCCATGAATC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ATTATACAAA | ATAAA | TATTCAGAAA | 5 |
DNA sequence
CCTGGATTATTCACGGCGTAGCCGTGAAAGTGGCTGAAAGCCACATAGTTACTATATTTTAATTGAATATTGCTTTTCACTTATCAAGTGAATAAAAAAA
GAGCATCCGTTTGTGGTAAAATTAAGGTGTTCAAAGCCATTAATAATACAAACAAAGGAGCCCTTCATGAGTATTGTAAACACCTTATCACTAGAAAGCA
ATAGACAGATTAAAATAAATTTTGATGGAGGAGATTTATCCTCCGATGCAGGCCTGCTTCTTATCAAAGAATTCGTAAGTAAACTTGACATTGATAAACT
TTTCAGTCGCTCATTTAAGACTAATGATTCTGCATCATTTAGATATCACACTGACAAGGAGAATCTCCTTCAGATAATCTATATGATTATTGCAGGTTAT
TTTGAAGATGATGCTTCAGATGAACTTACAAATGACCCAGTATTTAAAGCAGTACTAAATAAAGATGCTTTAGCATCACAACCTACGGTATCAAGATTCT
TTAACCGTATGGATGAAGATACTTTAAACCAATTCCTTACGATTGGCAGAATACTTCGAAAAAGAGTTTACAGTATTCAGATGCCACAGGCTGTTATTCT
GGATCTGGATTCCACTCTTCTTGATGCATACGGTAAACAGGAAGGCAGAGCCTTTAACTTTCATTATCGGAGCAATGGATACCATCCACTTGTCTGTTAT
GATGGAATGACTGGGGATCTGATAAAAATCCAACTTCGTGATGGAACACAGTATTCCTGCACTGGAGTGGTTGACTTCCTGCAACTGATACTTGATGAAT
ATCTGAATGATTATCCAACAATCCAAATTCTGCTTCGGGGTGACAGCGGTTTTGCTACGCCTGACCTTTACAAGCAGTGCGAGGAAAATGGCACAAGCTA
TGTCATCCGGCTGAAGGAGAATGGTATTCTCCGTGAAAAAGCATCCCATCTTGTGGATGAGCTTGATGAAATCACCAGGAATAACAAAGTTGATTATGCG
GTAGTTTATGGTGAATTCATGTACAAAGCAGGTCCATGGCCTTATGAAAGGCGTGTGGTTTGCAAGGTTGAAAAGCCGGAAAACCAGATGGTTTACATGT
ACACATTTGTTGTCACAAACATGGATTCCTCACCAGAGTATCTCATAAAATTTTACTGCAAAAGAGGACGGATGGAAAACTTCATCAAAGAAAGCAAATC
TGGTTTTGATTTCGCTTCTGTAAGTAGCCATGCTAGAATCGTAAATGCCAACAGACTTCAGGTACACGCTCTTGCGTATAACATATTTAATTGGTTTAGA
CGATTGGCGTTATCAGCAAACATGCGAAAACAACGCATAGATACCGTCCGTTTAAAACTGCTGAAGATTGCTGCAAAAATAATTCGTTCAGCAAGATATA
TCACATTCAAGCTGTGCAGTAGCTGCCCTTATAAGAATGAATTCTATGAGACACTTTCAAATATCGGTAAGCTGAATGTACAGCTGGAATAGCAACTATT
AACGAACCTTGATAGCTTAACAATTGCACTCTGAACTCTGCCACAGGGATTTTATACCCTTTTGACGGGTTAATTGAGTGATGTTATGGCTGCATGGATC
AATTTTTAGATTCATGGCACAGTTATCGCTTCAGATACTGTTCCGTGAATAATTTAGG
GAGCATCCGTTTGTGGTAAAATTAAGGTGTTCAAAGCCATTAATAATACAAACAAAGGAGCCCTTCATGAGTATTGTAAACACCTTATCACTAGAAAGCA
ATAGACAGATTAAAATAAATTTTGATGGAGGAGATTTATCCTCCGATGCAGGCCTGCTTCTTATCAAAGAATTCGTAAGTAAACTTGACATTGATAAACT
TTTCAGTCGCTCATTTAAGACTAATGATTCTGCATCATTTAGATATCACACTGACAAGGAGAATCTCCTTCAGATAATCTATATGATTATTGCAGGTTAT
TTTGAAGATGATGCTTCAGATGAACTTACAAATGACCCAGTATTTAAAGCAGTACTAAATAAAGATGCTTTAGCATCACAACCTACGGTATCAAGATTCT
TTAACCGTATGGATGAAGATACTTTAAACCAATTCCTTACGATTGGCAGAATACTTCGAAAAAGAGTTTACAGTATTCAGATGCCACAGGCTGTTATTCT
GGATCTGGATTCCACTCTTCTTGATGCATACGGTAAACAGGAAGGCAGAGCCTTTAACTTTCATTATCGGAGCAATGGATACCATCCACTTGTCTGTTAT
GATGGAATGACTGGGGATCTGATAAAAATCCAACTTCGTGATGGAACACAGTATTCCTGCACTGGAGTGGTTGACTTCCTGCAACTGATACTTGATGAAT
ATCTGAATGATTATCCAACAATCCAAATTCTGCTTCGGGGTGACAGCGGTTTTGCTACGCCTGACCTTTACAAGCAGTGCGAGGAAAATGGCACAAGCTA
TGTCATCCGGCTGAAGGAGAATGGTATTCTCCGTGAAAAAGCATCCCATCTTGTGGATGAGCTTGATGAAATCACCAGGAATAACAAAGTTGATTATGCG
GTAGTTTATGGTGAATTCATGTACAAAGCAGGTCCATGGCCTTATGAAAGGCGTGTGGTTTGCAAGGTTGAAAAGCCGGAAAACCAGATGGTTTACATGT
ACACATTTGTTGTCACAAACATGGATTCCTCACCAGAGTATCTCATAAAATTTTACTGCAAAAGAGGACGGATGGAAAACTTCATCAAAGAAAGCAAATC
TGGTTTTGATTTCGCTTCTGTAAGTAGCCATGCTAGAATCGTAAATGCCAACAGACTTCAGGTACACGCTCTTGCGTATAACATATTTAATTGGTTTAGA
CGATTGGCGTTATCAGCAAACATGCGAAAACAACGCATAGATACCGTCCGTTTAAAACTGCTGAAGATTGCTGCAAAAATAATTCGTTCAGCAAGATATA
TCACATTCAAGCTGTGCAGTAGCTGCCCTTATAAGAATGAATTCTATGAGACACTTTCAAATATCGGTAAGCTGAATGTACAGCTGGAATAGCAACTATT
AACGAACCTTGATAGCTTAACAATTGCACTCTGAACTCTGCCACAGGGATTTTATACCCTTTTGACGGGTTAATTGAGTGATGTTATGGCTGCATGGATC
AATTTTTAGATTCATGGCACAGTTATCGCTTCAGATACTGTTCCGTGAATAATTTAGG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1326 bp | 441 aa | 167 | 1492 | + | No |
Chemistry : DDE
ORF sequence :
MSIVNTLSLESNRQIKINFDGGDLSSDAGLLLIKEFVSKLDIDKLFSRSFKTNDSASFRYHTDKENLLQIIYMIIAGYFEDDASDELTNDPVFKAVLNKD
ALASQPTVSRFFNRMDEDTLNQFLTIGRILRKRVYSIQMPQAVILDLDSTLLDAYGKQEGRAFNFHYRSNGYHPLVCYDGMTGDLIKIQLRDGTQYSCTG
VVDFLQLILDEYLNDYPTIQILLRGDSGFATPDLYKQCEENGTSYVIRLKENGILREKASHLVDELDEITRNNKVDYAVVYGEFMYKAGPWPYERRVVCK
VEKPENQMVYMYTFVVTNMDSSPEYLIKFYCKRGRMENFIKESKSGFDFASVSSHARIVNANRLQVHALAYNIFNWFRRLALSANMRKQRIDTVRLKLLK
IAAKIIRSARYITFKLCSSCPYKNEFYETLSNIGKLNVQLE
ALASQPTVSRFFNRMDEDTLNQFLTIGRILRKRVYSIQMPQAVILDLDSTLLDAYGKQEGRAFNFHYRSNGYHPLVCYDGMTGDLIKIQLRDGTQYSCTG
VVDFLQLILDEYLNDYPTIQILLRGDSGFATPDLYKQCEENGTSYVIRLKENGILREKASHLVDELDEITRNNKVDYAVVYGEFMYKAGPWPYERRVVCK
VEKPENQMVYMYTFVVTNMDSSPEYLIKFYCKRGRMENFIKESKSGFDFASVSSHARIVNANRLQVHALAYNIFNWFRRLALSANMRKQRIDTVRLKLLK
IAAKIIRSARYITFKLCSSCPYKNEFYETLSNIGKLNVQLE
Blast result :
Comments
ISRgn3 is 52% aa similar to ISSpn5.
References
1] ISfinder annotation (2005)
2] Sudarsanam,P., Ley,R., Guruge,J., Turnbaugh,P.J., Mahowald,M., Liep,D. and Gordon,J. (2007) Direct submission GenBank.
2] Sudarsanam,P., Ley,R., Guruge,J., Turnbaugh,P.J., Mahowald,M., Liep,D. and Gordon,J. (2007) Direct submission GenBank.