ISBco1
- Family IS1380
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NZ_AAWV01000012 | ND | Bacillus coagulans | Bacillus coagulans 36D1 |
DNA section
IS Length : 1665 bp
Ends
IR Length : 15/17
IRL : CCCTGAATTATTCACAGAAATTCAGAAACTTATTATAACTTATGGATTAC
IRR : CCCTGAAATATTCATAGCTACAAATCCCATTTGATAAATTTTGTTAAATT
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GAAAATATACC | ATAATTATCG | 0 |
DNA sequence
CCCTGAATTATTCACAGAAATTCAGAAACTTATTATAACTTATGGATTACCAAGCCTTTTCGGCTTTATTGTAATTCATTAAAAAAATGAAAAAAGAATC
CATTTCTGTTAAAGTTAAAGTAACCAAAACAAAAACCAAACAGAAAGGACTCTTTATATGGTTACTTTAACGCAAAAAACACTTGATTTCAATCATAAAA
TTAAATTGTCAAATGATGGAGGTTCTCTTTCCTCCGATACAGGTGAGTTTCTTTTTAGAGAATTCGATGAAAAAATTGGTTTTTCAAAGACTTTAGTTAA
GTACTTGAGACTTAACGATTCAAGGAAATATTATCTTCATTCAAATGAAAACTTGTTACGTCAAAAAGTCTATCAAATCATTGCCGGGTATGCGGAAGAT
GATGCGGCTGATCAGTTGACTCATGATCCTGTGTTTAAGGAAATCATTGAAACTCCAACACTTGCTTCCCAGCCCAGTTTGTCTCGCTTTTATACACGAT
TTGATAAAGATTCAATTGAACAATTAAATCTGGCTAACCAAGAAGTGCTTGATAAGATTCATTGTTTTCGACAATCGAAAGAGTTATTTATCGACTTGGA
TTCGACTCATTCGGATACATATGGGGACCAAGAATCTTCGTCATATAATACTCATTATGGCACGATGGGTTTTCATCCATTAGTCGCCTTTGATGGTGCG
ACTGGTGACTTTTTGAAAGCACAACTCCGTCCCGGAAATGTTTATACATCAAATGGTGTGGTGGAATTTATTCGGCCTCTCATTAAACATTATAACGAAA
TGTTTCCGGAAACTACCCTGTTTCTTCGTGGAGATAGCGGGTTTGCTGTTCCGGGATTATACGATCTGTGTGAAGAAGAATCTGTTTTGTATATTATTCG
GTTGAAATCGAATTCACAACTACAAAGTTTAGCGAAGGAATACCATCCTTCTTCCGCACCTTTAGATGTTTCCAAGACGGAAACCTATTATGAAGAAACG
ATTTACCAAGCAAAATCATGGTCAAAACCAAGAAGGGTGATTATTCAATCGGTACGTCCTGCAGGTGAGCTGTTCTTTACCCATTCCTTTTTTGTTACTA
ACTTTGAATTAGCTTTCCCTCAAGATATCGTCCGAGCTTATCAAAAAAGAGGGACGATGGAAAACTATATCAAAGAAGCAAAAAATGGCTTTTACTTTGA
TCATATGAATAGCCACGCTTTTCTAGTGAACGAAGTAAAAATGATGTTAACACTTCTTGCATATAATTTGACCAATTGGTTACGAACTCTTTGTTTTCCG
GAAGGTCAAAAAACTATGCAAATTGATACGATACGTACTCGGTTAATTAAAGCGGCAAGTAAAGTCGTGAAATCAGGCAGATCCCTTTACTTCAAACTAT
CATCGAGTTTTGTGTATCAAAATTTCTTTTGGGATGTACTGAATCGAATTCAAAAGCTACAATTGGAATGACCAATAGAATACTTCTCATAGCTGAAAAA
ATAAATTTTTCAGTCAAGGGGCAAGTATGCCCAAAATACCAGAGTTGTTCTATTGAAAATTCAGTTATTTTATGAATTGGCTACGGTTCTTAATTAAATA
CCGTTATTTTCAACTAATTTAACAAAATTTATCAAATGGGATTTGTAGCTATGAATATTTCAGGG
CATTTCTGTTAAAGTTAAAGTAACCAAAACAAAAACCAAACAGAAAGGACTCTTTATATGGTTACTTTAACGCAAAAAACACTTGATTTCAATCATAAAA
TTAAATTGTCAAATGATGGAGGTTCTCTTTCCTCCGATACAGGTGAGTTTCTTTTTAGAGAATTCGATGAAAAAATTGGTTTTTCAAAGACTTTAGTTAA
GTACTTGAGACTTAACGATTCAAGGAAATATTATCTTCATTCAAATGAAAACTTGTTACGTCAAAAAGTCTATCAAATCATTGCCGGGTATGCGGAAGAT
GATGCGGCTGATCAGTTGACTCATGATCCTGTGTTTAAGGAAATCATTGAAACTCCAACACTTGCTTCCCAGCCCAGTTTGTCTCGCTTTTATACACGAT
TTGATAAAGATTCAATTGAACAATTAAATCTGGCTAACCAAGAAGTGCTTGATAAGATTCATTGTTTTCGACAATCGAAAGAGTTATTTATCGACTTGGA
TTCGACTCATTCGGATACATATGGGGACCAAGAATCTTCGTCATATAATACTCATTATGGCACGATGGGTTTTCATCCATTAGTCGCCTTTGATGGTGCG
ACTGGTGACTTTTTGAAAGCACAACTCCGTCCCGGAAATGTTTATACATCAAATGGTGTGGTGGAATTTATTCGGCCTCTCATTAAACATTATAACGAAA
TGTTTCCGGAAACTACCCTGTTTCTTCGTGGAGATAGCGGGTTTGCTGTTCCGGGATTATACGATCTGTGTGAAGAAGAATCTGTTTTGTATATTATTCG
GTTGAAATCGAATTCACAACTACAAAGTTTAGCGAAGGAATACCATCCTTCTTCCGCACCTTTAGATGTTTCCAAGACGGAAACCTATTATGAAGAAACG
ATTTACCAAGCAAAATCATGGTCAAAACCAAGAAGGGTGATTATTCAATCGGTACGTCCTGCAGGTGAGCTGTTCTTTACCCATTCCTTTTTTGTTACTA
ACTTTGAATTAGCTTTCCCTCAAGATATCGTCCGAGCTTATCAAAAAAGAGGGACGATGGAAAACTATATCAAAGAAGCAAAAAATGGCTTTTACTTTGA
TCATATGAATAGCCACGCTTTTCTAGTGAACGAAGTAAAAATGATGTTAACACTTCTTGCATATAATTTGACCAATTGGTTACGAACTCTTTGTTTTCCG
GAAGGTCAAAAAACTATGCAAATTGATACGATACGTACTCGGTTAATTAAAGCGGCAAGTAAAGTCGTGAAATCAGGCAGATCCCTTTACTTCAAACTAT
CATCGAGTTTTGTGTATCAAAATTTCTTTTGGGATGTACTGAATCGAATTCAAAAGCTACAATTGGAATGACCAATAGAATACTTCTCATAGCTGAAAAA
ATAAATTTTTCAGTCAAGGGGCAAGTATGCCCAAAATACCAGAGTTGTTCTATTGAAAATTCAGTTATTTTATGAATTGGCTACGGTTCTTAATTAAATA
CCGTTATTTTCAACTAATTTAACAAAATTTATCAAATGGGATTTGTAGCTATGAATATTTCAGGG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1314 bp | 437 aa | 158 | 1471 | + | No |
Chemistry : DDE
ORF sequence :
MVTLTQKTLDFNHKIKLSNDGGSLSSDTGEFLFREFDEKIGFSKTLVKYLRLNDSRKYYLHSNENLLRQKVYQIIAGYAEDDAADQLTHDPVFKEIIETP
TLASQPSLSRFYTRFDKDSIEQLNLANQEVLDKIHCFRQSKELFIDLDSTHSDTYGDQESSSYNTHYGTMGFHPLVAFDGATGDFLKAQLRPGNVYTSNG
VVEFIRPLIKHYNEMFPETTLFLRGDSGFAVPGLYDLCEEESVLYIIRLKSNSQLQSLAKEYHPSSAPLDVSKTETYYEETIYQAKSWSKPRRVIIQSVR
PAGELFFTHSFFVTNFELAFPQDIVRAYQKRGTMENYIKEAKNGFYFDHMNSHAFLVNEVKMMLTLLAYNLTNWLRTLCFPEGQKTMQIDTIRTRLIKAA
SKVVKSGRSLYFKLSSSFVYQNFFWDVLNRIQKLQLE
TLASQPSLSRFYTRFDKDSIEQLNLANQEVLDKIHCFRQSKELFIDLDSTHSDTYGDQESSSYNTHYGTMGFHPLVAFDGATGDFLKAQLRPGNVYTSNG
VVEFIRPLIKHYNEMFPETTLFLRGDSGFAVPGLYDLCEEESVLYIIRLKSNSQLQSLAKEYHPSSAPLDVSKTETYYEETIYQAKSWSKPRRVIIQSVR
PAGELFFTHSFFVTNFELAFPQDIVRAYQKRGTMENYIKEAKNGFYFDHMNSHAFLVNEVKMMLTLLAYNLTNWLRTLCFPEGQKTMQIDTIRTRLIKAA
SKVVKSGRSLYFKLSSSFVYQNFFWDVLNRIQKLQLE
Blast result :
Comments
ISBco1 is 56% aa similar to ISSpn5.
References
1] ISfinder annotation (2009)
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Pitluck,S. and Richardson,P. (2007) Direct submission GenBank.
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Pitluck,S. and Richardson,P. (2007) Direct submission GenBank.