ISBha1

  • Family IS1380
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AB024553 ND Bacillus halodurans
Bacillus halodurans C-125
DNA section
IS Length : 1665 bp

Ends


IR Length : 15

IRL : CCTGAATTATTCATAAAAAATCTTTGATAACCAAATAATGCTTATCTATC
IRR : CCTGAATTATTCATACCTCGAACATAAATCAGGGTTTTAGGCCAAAAACG

Insertion site


Left flankDirect repeatRight flankDR Length
AATTTACTCATACTAGATTA0

DNA sequence

CCTGAATTATTCATAAAAAATCTTTGATAACCAAATAATGCTTATCTATCAAGGTATTGAGCTAAATGGTCCATGCATCAAATAAATGAAAAAAGAATCC
ATTTCTGATAAGGTTAAAACAGCTACGAAATAACCACAGAAAGGATTCTTATAATGGCTACTTTACCGCAACTAACACTAGATTTCAATCGTCGAATTAA
ATTATCAACTGATGGAGGCTCTCTTTCTTCTGATACAGGTGAATTCGTTTTTCGAGAGTTTGATGAAAAAATCGGATTCTCTGATACTCTTGTTCAACAC
CTGCATTTGAATGACGAGAGAAAATACTATCTTCATTCGAATGAAAATCTCTTTCGTCAAAAGATTTATCAACTCATCGCTGGTTATGCTGAGGATGATG
CGGCCGATCAATTAACAAATGACCCCGTTTTTACACAAGTCATTGGAACAAATGCGTTAGCTTCTCAACCAAGTTTATCTCGCTTTTATACACGATTTGA
TCATGAGTCCATTGAACAATTACATCACGCTAACCAAGAACTTTTAGATAAAGTACATGAACTGAGAGAGTCAAAAGCACTCATCATTGATTTAGATTCA
ACACATGCTGACACATACGGCCAACAAGAATTTACAGCTTATAATACCCATTACGGGACTGTTGGCTTTCATCCATTGGTTGCCTTCGATGGGATAACAG
GCGATTTCCTAAAAGCCCAGCTACGCCCTGGAAATGTGTATACGTCCAATGGTGTTGTGGATTTTGTGGAACCACTTATCAAACATTACAATGAAAAATT
TCCGGCAACGACACCATTCTTACGCGGCGATAGTGGTTTTGCCGTTCCAGCTCTGTACGATTTATGTGAACGCGAATCGGTTTATTATGTCATTCGTTTG
AAATCTAACGCCATTTTACAGCGAATGGCAGATGAATGTCATCCAGCCACAGTACCGTCAGATGTGACAAAGTCTGAATGTTATTATGAGGAAATCGACT
ATCAAGCGAAATCATGGTCTAAGCCGAGAAAGGTCATCATCCAATCGGTTCGCCCTGCAGGCGAATTGTTGTTTACCTATTCATTTTTTGTAACGAGTCT
AGGAGATATATTCTCTCCAAAAGGTATCGTTCGTACGTACCAAAAAAGAGGGACGATGGAGAACTACATCAAGGAAGCTAAAAATGGTTTTTATTTGGAT
AAAATGAGCAGTCACTCTTTTCAAGTGAATGAAGTGAAAATGATGGTAAGCCTGTTAGCCTATAACCTAACGAATTGGCTACGTACGCTTTGCTCTCCAG
AAGCACAAAAAGGGATGCAAATTGAAACCATACGTACAAGGGTCATTAAAGTGGCTAGTAAATTAGTGAAATCAGGACGATCCCTTTACTTTAAATTGTC
CTCTAGTTTTGTATACCAAGATTTTTTCTGGAAAGTACTTCAGCGGATTCAACAGCTAAAGCTAGGATAAAATCGAAAAATCCTGTTTTTTAAACACGAT
TTAAGACCAAGGGAGAAGTATGCCCAAAAACAGGCATTTTTCCGCTCCTCATTCTAGAAAGATGCTTTTCAGAAGAAAATAACCATGATTCTTTCAAAGG
GATCGGGAATCTAATCGTTTTTGGCCTAAAACCCTGATTTATGTTCGAGGTATGAATAATTCAGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1317 bp438 aa1541470+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MATLPQLTLDFNRRIKLSTDGGSLSSDTGEFVFREFDEKIGFSDTLVQHLHLNDERKYYLHSNENLFRQKIYQLIAGYAEDDAADQLTNDPVFTQVIGTN
ALASQPSLSRFYTRFDHESIEQLHHANQELLDKVHELRESKALIIDLDSTHADTYGQQEFTAYNTHYGTVGFHPLVAFDGITGDFLKAQLRPGNVYTSNG
VVDFVEPLIKHYNEKFPATTPFLRGDSGFAVPALYDLCERESVYYVIRLKSNAILQRMADECHPATVPSDVTKSECYYEEIDYQAKSWSKPRKVIIQSVR
PAGELLFTYSFFVTSLGDIFSPKGIVRTYQKRGTMENYIKEAKNGFYLDKMSSHSFQVNEVKMMVSLLAYNLTNWLRTLCSPEAQKGMQIETIRTRVIKV
ASKLVKSGRSLYFKLSSSFVYQDFFWKVLQRIQQLKLG

 

Blast result :
Comments
ISBha1 is 55% aa similar to ISSpn5.
References
1] ISfinder annotation (2009)
2] Takami,H., Takaki,Y., Nakasone,K., Sakiyama,T., Maeno,G., Sasaki,R., Hirama,C., Fuji,F. and Masui,N. (1999) Extremophiles 3 (3), 227-233