ISBha1
- Family IS1380
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AB024553 | ND | Bacillus halodurans | Bacillus halodurans C-125 |
DNA section
IS Length : 1665 bp
Ends
IR Length : 15
IRL : CCTGAATTATTCATAAAAAATCTTTGATAACCAAATAATGCTTATCTATC
IRR : CCTGAATTATTCATACCTCGAACATAAATCAGGGTTTTAGGCCAAAAACG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AATTTACTCA | TACTAGATTA | 0 |
DNA sequence
CCTGAATTATTCATAAAAAATCTTTGATAACCAAATAATGCTTATCTATCAAGGTATTGAGCTAAATGGTCCATGCATCAAATAAATGAAAAAAGAATCC
ATTTCTGATAAGGTTAAAACAGCTACGAAATAACCACAGAAAGGATTCTTATAATGGCTACTTTACCGCAACTAACACTAGATTTCAATCGTCGAATTAA
ATTATCAACTGATGGAGGCTCTCTTTCTTCTGATACAGGTGAATTCGTTTTTCGAGAGTTTGATGAAAAAATCGGATTCTCTGATACTCTTGTTCAACAC
CTGCATTTGAATGACGAGAGAAAATACTATCTTCATTCGAATGAAAATCTCTTTCGTCAAAAGATTTATCAACTCATCGCTGGTTATGCTGAGGATGATG
CGGCCGATCAATTAACAAATGACCCCGTTTTTACACAAGTCATTGGAACAAATGCGTTAGCTTCTCAACCAAGTTTATCTCGCTTTTATACACGATTTGA
TCATGAGTCCATTGAACAATTACATCACGCTAACCAAGAACTTTTAGATAAAGTACATGAACTGAGAGAGTCAAAAGCACTCATCATTGATTTAGATTCA
ACACATGCTGACACATACGGCCAACAAGAATTTACAGCTTATAATACCCATTACGGGACTGTTGGCTTTCATCCATTGGTTGCCTTCGATGGGATAACAG
GCGATTTCCTAAAAGCCCAGCTACGCCCTGGAAATGTGTATACGTCCAATGGTGTTGTGGATTTTGTGGAACCACTTATCAAACATTACAATGAAAAATT
TCCGGCAACGACACCATTCTTACGCGGCGATAGTGGTTTTGCCGTTCCAGCTCTGTACGATTTATGTGAACGCGAATCGGTTTATTATGTCATTCGTTTG
AAATCTAACGCCATTTTACAGCGAATGGCAGATGAATGTCATCCAGCCACAGTACCGTCAGATGTGACAAAGTCTGAATGTTATTATGAGGAAATCGACT
ATCAAGCGAAATCATGGTCTAAGCCGAGAAAGGTCATCATCCAATCGGTTCGCCCTGCAGGCGAATTGTTGTTTACCTATTCATTTTTTGTAACGAGTCT
AGGAGATATATTCTCTCCAAAAGGTATCGTTCGTACGTACCAAAAAAGAGGGACGATGGAGAACTACATCAAGGAAGCTAAAAATGGTTTTTATTTGGAT
AAAATGAGCAGTCACTCTTTTCAAGTGAATGAAGTGAAAATGATGGTAAGCCTGTTAGCCTATAACCTAACGAATTGGCTACGTACGCTTTGCTCTCCAG
AAGCACAAAAAGGGATGCAAATTGAAACCATACGTACAAGGGTCATTAAAGTGGCTAGTAAATTAGTGAAATCAGGACGATCCCTTTACTTTAAATTGTC
CTCTAGTTTTGTATACCAAGATTTTTTCTGGAAAGTACTTCAGCGGATTCAACAGCTAAAGCTAGGATAAAATCGAAAAATCCTGTTTTTTAAACACGAT
TTAAGACCAAGGGAGAAGTATGCCCAAAAACAGGCATTTTTCCGCTCCTCATTCTAGAAAGATGCTTTTCAGAAGAAAATAACCATGATTCTTTCAAAGG
GATCGGGAATCTAATCGTTTTTGGCCTAAAACCCTGATTTATGTTCGAGGTATGAATAATTCAGG
ATTTCTGATAAGGTTAAAACAGCTACGAAATAACCACAGAAAGGATTCTTATAATGGCTACTTTACCGCAACTAACACTAGATTTCAATCGTCGAATTAA
ATTATCAACTGATGGAGGCTCTCTTTCTTCTGATACAGGTGAATTCGTTTTTCGAGAGTTTGATGAAAAAATCGGATTCTCTGATACTCTTGTTCAACAC
CTGCATTTGAATGACGAGAGAAAATACTATCTTCATTCGAATGAAAATCTCTTTCGTCAAAAGATTTATCAACTCATCGCTGGTTATGCTGAGGATGATG
CGGCCGATCAATTAACAAATGACCCCGTTTTTACACAAGTCATTGGAACAAATGCGTTAGCTTCTCAACCAAGTTTATCTCGCTTTTATACACGATTTGA
TCATGAGTCCATTGAACAATTACATCACGCTAACCAAGAACTTTTAGATAAAGTACATGAACTGAGAGAGTCAAAAGCACTCATCATTGATTTAGATTCA
ACACATGCTGACACATACGGCCAACAAGAATTTACAGCTTATAATACCCATTACGGGACTGTTGGCTTTCATCCATTGGTTGCCTTCGATGGGATAACAG
GCGATTTCCTAAAAGCCCAGCTACGCCCTGGAAATGTGTATACGTCCAATGGTGTTGTGGATTTTGTGGAACCACTTATCAAACATTACAATGAAAAATT
TCCGGCAACGACACCATTCTTACGCGGCGATAGTGGTTTTGCCGTTCCAGCTCTGTACGATTTATGTGAACGCGAATCGGTTTATTATGTCATTCGTTTG
AAATCTAACGCCATTTTACAGCGAATGGCAGATGAATGTCATCCAGCCACAGTACCGTCAGATGTGACAAAGTCTGAATGTTATTATGAGGAAATCGACT
ATCAAGCGAAATCATGGTCTAAGCCGAGAAAGGTCATCATCCAATCGGTTCGCCCTGCAGGCGAATTGTTGTTTACCTATTCATTTTTTGTAACGAGTCT
AGGAGATATATTCTCTCCAAAAGGTATCGTTCGTACGTACCAAAAAAGAGGGACGATGGAGAACTACATCAAGGAAGCTAAAAATGGTTTTTATTTGGAT
AAAATGAGCAGTCACTCTTTTCAAGTGAATGAAGTGAAAATGATGGTAAGCCTGTTAGCCTATAACCTAACGAATTGGCTACGTACGCTTTGCTCTCCAG
AAGCACAAAAAGGGATGCAAATTGAAACCATACGTACAAGGGTCATTAAAGTGGCTAGTAAATTAGTGAAATCAGGACGATCCCTTTACTTTAAATTGTC
CTCTAGTTTTGTATACCAAGATTTTTTCTGGAAAGTACTTCAGCGGATTCAACAGCTAAAGCTAGGATAAAATCGAAAAATCCTGTTTTTTAAACACGAT
TTAAGACCAAGGGAGAAGTATGCCCAAAAACAGGCATTTTTCCGCTCCTCATTCTAGAAAGATGCTTTTCAGAAGAAAATAACCATGATTCTTTCAAAGG
GATCGGGAATCTAATCGTTTTTGGCCTAAAACCCTGATTTATGTTCGAGGTATGAATAATTCAGG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1317 bp | 438 aa | 154 | 1470 | + | No |
Chemistry : DDE
ORF sequence :
MATLPQLTLDFNRRIKLSTDGGSLSSDTGEFVFREFDEKIGFSDTLVQHLHLNDERKYYLHSNENLFRQKIYQLIAGYAEDDAADQLTNDPVFTQVIGTN
ALASQPSLSRFYTRFDHESIEQLHHANQELLDKVHELRESKALIIDLDSTHADTYGQQEFTAYNTHYGTVGFHPLVAFDGITGDFLKAQLRPGNVYTSNG
VVDFVEPLIKHYNEKFPATTPFLRGDSGFAVPALYDLCERESVYYVIRLKSNAILQRMADECHPATVPSDVTKSECYYEEIDYQAKSWSKPRKVIIQSVR
PAGELLFTYSFFVTSLGDIFSPKGIVRTYQKRGTMENYIKEAKNGFYLDKMSSHSFQVNEVKMMVSLLAYNLTNWLRTLCSPEAQKGMQIETIRTRVIKV
ASKLVKSGRSLYFKLSSSFVYQDFFWKVLQRIQQLKLG
ALASQPSLSRFYTRFDHESIEQLHHANQELLDKVHELRESKALIIDLDSTHADTYGQQEFTAYNTHYGTVGFHPLVAFDGITGDFLKAQLRPGNVYTSNG
VVDFVEPLIKHYNEKFPATTPFLRGDSGFAVPALYDLCERESVYYVIRLKSNAILQRMADECHPATVPSDVTKSECYYEEIDYQAKSWSKPRKVIIQSVR
PAGELLFTYSFFVTSLGDIFSPKGIVRTYQKRGTMENYIKEAKNGFYLDKMSSHSFQVNEVKMMVSLLAYNLTNWLRTLCSPEAQKGMQIETIRTRVIKV
ASKLVKSGRSLYFKLSSSFVYQDFFWKVLQRIQQLKLG
Blast result :
Comments
ISBha1 is 55% aa similar to ISSpn5.
References
1] ISfinder annotation (2009)
2] Takami,H., Takaki,Y., Nakasone,K., Sakiyama,T., Maeno,G., Sasaki,R., Hirama,C., Fuji,F. and Masui,N. (1999) Extremophiles 3 (3), 227-233
2] Takami,H., Takaki,Y., Nakasone,K., Sakiyama,T., Maeno,G., Sasaki,R., Hirama,C., Fuji,F. and Masui,N. (1999) Extremophiles 3 (3), 227-233