ISDpr5

  • Family IS1380
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_AAQF01000018 ND delta proteobacterium
delta proteobacterium MLMS-1
DNA section
IS Length : 1653 bp

Ends


IR Length : 12/17

IRL : CCTGGGTCCGTGAAAAAGTTGCAATAAAAAACAATCAATATCCAGCTAAC
IRR : CCTGAATCAGTGAGTAACCCTGTGCTCCCCCATTAGCGGGAGCACTATTT

Insertion site


Left flankDirect repeatRight flankDR Length
GCTTAATAGAAACCAAGGCACCCCCCT0
GATGCACACGTTCTCGTTATATATATCATAGTCGA5

DNA sequence

CCTGGGTCCGTGAAAAAGTTGCAATAAAAAACAATCAATATCCAGCTAACATGTTGAATTTTGCGCAAAATCGATTAATATGCATCCGTCTAAAAAACTC
ACCTAGCGGGTGCAAAAATGAAAAAGTTCATCATCGAGAGGTCCAAGGACGAATTTTACACCTCCCATTCCGGGCTGGCCCTGGTTGGCCTGGGGGTCAA
TCGCTTCACCAGCCTGAGCGGGAAGCTGAAGAGAGCCATGACGGACAAGACCATCAGCAACATCGACGTTCTTCGCAGCTATATCGGGTTGCTTGCCATG
GGTAAAAGCGATTTCGAGGCCATCACCGACATGCGGGACGATCATTTCTTCCGTGAATCAATGGGCTCAAAAAAGATCCCCTCAACCGAGACTTTGCGCC
AGCGACTCGACGAGATCGCAACTGATGCTCTACCCATCGTCTCCGGAACCTATACCGAGTTTATCAAACGCTCCAAGGGGAGGATAACTCCCCTGGCCAC
CGGTCACGTGCCTTTGGACATCGATGTTTTCTGCATGGACAACTCCGGCACTAAAAAAGAGGGGGTAACCTACACCTACCATGGCTATCACGGCTACGCT
CCGATCGCCGCCTACCTGGGCGAGGAGGGCTGGTGCCTCAACCTGGAGTTCCGGGAGGGTAGCCAGCACAGCCAGAACAACTTCATTCCTTTCCTGCAGG
AGTCCCTGGCCAGAGCAAGCGAGTTGACCAAAAAGCCGCTATTGCTCAGACTTGATTCTGCTCACGATGCCGTCGAAACCCGAGCGCTGGTTGCCGGACG
CAAGAAAGTCGATTACATCCTGAAATGGAACCCTCGCCAGCATGACCGCCAAGCCCTGCTCCAAAGGGGCTTGCGGGAAGGCAAAGTCAGCATCCCCAGG
GAGGGAAAGCGGGTGGCCATTTTCAGCTACAACCAGCTTGAAGAGTACGAGGAGCAAAAGTTCAGCAGCCGTTTGGTGGTTCGGGTGACGGAGCGCGCCA
TTGACCGTAGCGGTCAACGGCTGCTGACGCCTGAAATCACGGTTGAAGGCTGGTGGACCTCTCTTTACCGGCCGGAAGAGGAGATCATCAAGATCTACAA
CGACCACGGCACCAGCGAACAGTTCCACAGTGAGTTCAAGACCGATATGGATATGGAACGGCTGCCGTCCGGTAAATTCGATACCAATGCTCTGGTTATG
GCTCTTGCCGGCCTGACTTACAATATTCTGCGTTTTATCGGCCAGCTCGGCCTGCTGGGAAACCAATCACCGGTTCGCCATGCCGCCAAGCGCCGTCGGA
TCAGGACGGTCATCCAGGAGCTGATCTATCGCGCCGCGAGGCTGATTGCCAGCGGACGCCGGTTGAAGCTGAGATTCAGCCACCATTGCCAAAGCTTTGG
CGCGTTTCGGGAGGTTTATGGCCGCCTTGCCGCCGGATAGCCGATCTCGGCGACCAGGGACTCAACATGGCGGCCCCGGCCCGGCGGGACAAGTATGCTG
TTTTTTAGCCGAAATGGGCTGTTTTTTCAAAGAGCGGGCGAAAAGATCGCCGATACCGCCACAGTTTTGTGTTATGTCAGGGTTGGCAACGGCACTTTTT
AAAAAATAGTGCTCCCGCTAATGGGGGAGCACAGGGTTACTCACTGATTCAGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1323 bp440 aa1181440+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKKFIIERSKDEFYTSHSGLALVGLGVNRFTSLSGKLKRAMTDKTISNIDVLRSYIGLLAMGKSDFEAITDMRDDHFFRESMGSKKIPSTETLRQRLDEI
ATDALPIVSGTYTEFIKRSKGRITPLATGHVPLDIDVFCMDNSGTKKEGVTYTYHGYHGYAPIAAYLGEEGWCLNLEFREGSQHSQNNFIPFLQESLARA
SELTKKPLLLRLDSAHDAVETRALVAGRKKVDYILKWNPRQHDRQALLQRGLREGKVSIPREGKRVAIFSYNQLEEYEEQKFSSRLVVRVTERAIDRSGQ
RLLTPEITVEGWWTSLYRPEEEIIKIYNDHGTSEQFHSEFKTDMDMERLPSGKFDTNALVMALAGLTYNILRFIGQLGLLGNQSPVRHAAKRRRIRTVIQ
ELIYRAARLIASGRRLKLRFSHHCQSFGAFREVYGRLAAG

 

Blast result :
Comments
ISDpr5 is 59% aa similar to ISAzo40.
References
1] ISfinder annotation (2009)
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Bruce,D., Pitluck,S. and Richardson,P. (2006) Direct submission GenBank