ISDpr5
- Family IS1380
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_AAQF01000018 | ND | delta proteobacterium | delta proteobacterium MLMS-1 |
DNA section
IS Length : 1653 bp
Ends
IR Length : 12/17
IRL : CCTGGGTCCGTGAAAAAGTTGCAATAAAAAACAATCAATATCCAGCTAAC
IRR : CCTGAATCAGTGAGTAACCCTGTGCTCCCCCATTAGCGGGAGCACTATTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GCTTAATAGAA | ACCAAGGCACCCCCCT | 0 | |
GATGCACACGTTCTC | GTTAT | ATATATCATAGTCGA | 5 |
DNA sequence
CCTGGGTCCGTGAAAAAGTTGCAATAAAAAACAATCAATATCCAGCTAACATGTTGAATTTTGCGCAAAATCGATTAATATGCATCCGTCTAAAAAACTC
ACCTAGCGGGTGCAAAAATGAAAAAGTTCATCATCGAGAGGTCCAAGGACGAATTTTACACCTCCCATTCCGGGCTGGCCCTGGTTGGCCTGGGGGTCAA
TCGCTTCACCAGCCTGAGCGGGAAGCTGAAGAGAGCCATGACGGACAAGACCATCAGCAACATCGACGTTCTTCGCAGCTATATCGGGTTGCTTGCCATG
GGTAAAAGCGATTTCGAGGCCATCACCGACATGCGGGACGATCATTTCTTCCGTGAATCAATGGGCTCAAAAAAGATCCCCTCAACCGAGACTTTGCGCC
AGCGACTCGACGAGATCGCAACTGATGCTCTACCCATCGTCTCCGGAACCTATACCGAGTTTATCAAACGCTCCAAGGGGAGGATAACTCCCCTGGCCAC
CGGTCACGTGCCTTTGGACATCGATGTTTTCTGCATGGACAACTCCGGCACTAAAAAAGAGGGGGTAACCTACACCTACCATGGCTATCACGGCTACGCT
CCGATCGCCGCCTACCTGGGCGAGGAGGGCTGGTGCCTCAACCTGGAGTTCCGGGAGGGTAGCCAGCACAGCCAGAACAACTTCATTCCTTTCCTGCAGG
AGTCCCTGGCCAGAGCAAGCGAGTTGACCAAAAAGCCGCTATTGCTCAGACTTGATTCTGCTCACGATGCCGTCGAAACCCGAGCGCTGGTTGCCGGACG
CAAGAAAGTCGATTACATCCTGAAATGGAACCCTCGCCAGCATGACCGCCAAGCCCTGCTCCAAAGGGGCTTGCGGGAAGGCAAAGTCAGCATCCCCAGG
GAGGGAAAGCGGGTGGCCATTTTCAGCTACAACCAGCTTGAAGAGTACGAGGAGCAAAAGTTCAGCAGCCGTTTGGTGGTTCGGGTGACGGAGCGCGCCA
TTGACCGTAGCGGTCAACGGCTGCTGACGCCTGAAATCACGGTTGAAGGCTGGTGGACCTCTCTTTACCGGCCGGAAGAGGAGATCATCAAGATCTACAA
CGACCACGGCACCAGCGAACAGTTCCACAGTGAGTTCAAGACCGATATGGATATGGAACGGCTGCCGTCCGGTAAATTCGATACCAATGCTCTGGTTATG
GCTCTTGCCGGCCTGACTTACAATATTCTGCGTTTTATCGGCCAGCTCGGCCTGCTGGGAAACCAATCACCGGTTCGCCATGCCGCCAAGCGCCGTCGGA
TCAGGACGGTCATCCAGGAGCTGATCTATCGCGCCGCGAGGCTGATTGCCAGCGGACGCCGGTTGAAGCTGAGATTCAGCCACCATTGCCAAAGCTTTGG
CGCGTTTCGGGAGGTTTATGGCCGCCTTGCCGCCGGATAGCCGATCTCGGCGACCAGGGACTCAACATGGCGGCCCCGGCCCGGCGGGACAAGTATGCTG
TTTTTTAGCCGAAATGGGCTGTTTTTTCAAAGAGCGGGCGAAAAGATCGCCGATACCGCCACAGTTTTGTGTTATGTCAGGGTTGGCAACGGCACTTTTT
AAAAAATAGTGCTCCCGCTAATGGGGGAGCACAGGGTTACTCACTGATTCAGG
ACCTAGCGGGTGCAAAAATGAAAAAGTTCATCATCGAGAGGTCCAAGGACGAATTTTACACCTCCCATTCCGGGCTGGCCCTGGTTGGCCTGGGGGTCAA
TCGCTTCACCAGCCTGAGCGGGAAGCTGAAGAGAGCCATGACGGACAAGACCATCAGCAACATCGACGTTCTTCGCAGCTATATCGGGTTGCTTGCCATG
GGTAAAAGCGATTTCGAGGCCATCACCGACATGCGGGACGATCATTTCTTCCGTGAATCAATGGGCTCAAAAAAGATCCCCTCAACCGAGACTTTGCGCC
AGCGACTCGACGAGATCGCAACTGATGCTCTACCCATCGTCTCCGGAACCTATACCGAGTTTATCAAACGCTCCAAGGGGAGGATAACTCCCCTGGCCAC
CGGTCACGTGCCTTTGGACATCGATGTTTTCTGCATGGACAACTCCGGCACTAAAAAAGAGGGGGTAACCTACACCTACCATGGCTATCACGGCTACGCT
CCGATCGCCGCCTACCTGGGCGAGGAGGGCTGGTGCCTCAACCTGGAGTTCCGGGAGGGTAGCCAGCACAGCCAGAACAACTTCATTCCTTTCCTGCAGG
AGTCCCTGGCCAGAGCAAGCGAGTTGACCAAAAAGCCGCTATTGCTCAGACTTGATTCTGCTCACGATGCCGTCGAAACCCGAGCGCTGGTTGCCGGACG
CAAGAAAGTCGATTACATCCTGAAATGGAACCCTCGCCAGCATGACCGCCAAGCCCTGCTCCAAAGGGGCTTGCGGGAAGGCAAAGTCAGCATCCCCAGG
GAGGGAAAGCGGGTGGCCATTTTCAGCTACAACCAGCTTGAAGAGTACGAGGAGCAAAAGTTCAGCAGCCGTTTGGTGGTTCGGGTGACGGAGCGCGCCA
TTGACCGTAGCGGTCAACGGCTGCTGACGCCTGAAATCACGGTTGAAGGCTGGTGGACCTCTCTTTACCGGCCGGAAGAGGAGATCATCAAGATCTACAA
CGACCACGGCACCAGCGAACAGTTCCACAGTGAGTTCAAGACCGATATGGATATGGAACGGCTGCCGTCCGGTAAATTCGATACCAATGCTCTGGTTATG
GCTCTTGCCGGCCTGACTTACAATATTCTGCGTTTTATCGGCCAGCTCGGCCTGCTGGGAAACCAATCACCGGTTCGCCATGCCGCCAAGCGCCGTCGGA
TCAGGACGGTCATCCAGGAGCTGATCTATCGCGCCGCGAGGCTGATTGCCAGCGGACGCCGGTTGAAGCTGAGATTCAGCCACCATTGCCAAAGCTTTGG
CGCGTTTCGGGAGGTTTATGGCCGCCTTGCCGCCGGATAGCCGATCTCGGCGACCAGGGACTCAACATGGCGGCCCCGGCCCGGCGGGACAAGTATGCTG
TTTTTTAGCCGAAATGGGCTGTTTTTTCAAAGAGCGGGCGAAAAGATCGCCGATACCGCCACAGTTTTGTGTTATGTCAGGGTTGGCAACGGCACTTTTT
AAAAAATAGTGCTCCCGCTAATGGGGGAGCACAGGGTTACTCACTGATTCAGG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1323 bp | 440 aa | 118 | 1440 | + | No |
Chemistry : DDE
ORF sequence :
MKKFIIERSKDEFYTSHSGLALVGLGVNRFTSLSGKLKRAMTDKTISNIDVLRSYIGLLAMGKSDFEAITDMRDDHFFRESMGSKKIPSTETLRQRLDEI
ATDALPIVSGTYTEFIKRSKGRITPLATGHVPLDIDVFCMDNSGTKKEGVTYTYHGYHGYAPIAAYLGEEGWCLNLEFREGSQHSQNNFIPFLQESLARA
SELTKKPLLLRLDSAHDAVETRALVAGRKKVDYILKWNPRQHDRQALLQRGLREGKVSIPREGKRVAIFSYNQLEEYEEQKFSSRLVVRVTERAIDRSGQ
RLLTPEITVEGWWTSLYRPEEEIIKIYNDHGTSEQFHSEFKTDMDMERLPSGKFDTNALVMALAGLTYNILRFIGQLGLLGNQSPVRHAAKRRRIRTVIQ
ELIYRAARLIASGRRLKLRFSHHCQSFGAFREVYGRLAAG
ATDALPIVSGTYTEFIKRSKGRITPLATGHVPLDIDVFCMDNSGTKKEGVTYTYHGYHGYAPIAAYLGEEGWCLNLEFREGSQHSQNNFIPFLQESLARA
SELTKKPLLLRLDSAHDAVETRALVAGRKKVDYILKWNPRQHDRQALLQRGLREGKVSIPREGKRVAIFSYNQLEEYEEQKFSSRLVVRVTERAIDRSGQ
RLLTPEITVEGWWTSLYRPEEEIIKIYNDHGTSEQFHSEFKTDMDMERLPSGKFDTNALVMALAGLTYNILRFIGQLGLLGNQSPVRHAAKRRRIRTVIQ
ELIYRAARLIASGRRLKLRFSHHCQSFGAFREVYGRLAAG
Blast result :
Comments
ISDpr5 is 59% aa similar to ISAzo40.
References
1] ISfinder annotation (2009)
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Bruce,D., Pitluck,S. and Richardson,P. (2006) Direct submission GenBank
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Bruce,D., Pitluck,S. and Richardson,P. (2006) Direct submission GenBank