ISMasp7

  • Family IS1380
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_008576 ND Magnetococcus sp.
Magnetococcus sp. MC-1
DNA section
IS Length : 1661 bp

Ends


IR Length : 18/21

IRL : CCTGGATCCGTGAGTTTATTTTTAGTTTGCGTCCTGCAACCGTATGGCAA
IRR : CCTGAATCGGTGACTTTCTTTGGGGCGTGTTGACCGAACGCTTCTCCCAA

Insertion site


Left flankDirect repeatRight flankDR Length
TATTTGATAAAAATAAATAACAATTATCAATCAA5
GAAAACTCTACAGAGTCTTAGTACATCTTAATCGGAATA T0
GAAATTGTCTATAGATATTTCTAATTCTAGTGGTGTGGGC0

DNA sequence

CCTGGATCCGTGAGTTTATTTTTAGTTTGCGTCCTGCAACCGTATGGCAAAGCAGATAAATTTGTTATTATATGAACTGTTTTTTGATTCACCCAGGGGG
TGAGATGAAGCGGTTCAAATTGGAGCAATCGGAGCAGGAGATCTACACGGCGACCAGTGGTCTGGCACTGGCAGGCGCTTGTCTGGACCGCTATGTGAAT
TTGGACAAGGAATTGAAGAAAGCACAGCCGTTGCGACACGGTATCAGCCATGCTGACATTGCTCGCAGCTACCTGGGTTTGTTGTTGCAGGGCAAGAGCG
ACTTTGAGGCGATTGCACAGTTCAGAGAAAATCGATTTTTCATGGAGGCACTTGGTATAGCCCATGTGCCATCCATTGCGAGAATGCGCCAGCGGCTGGA
TGAAGGGGCTGAATCGTGGTTGTCTGTAATAGAGTGCTGCACAGTTGATTTTTTGGTCAACGCCGAAGTTCCCGTGACGTGCTTGGTGACCGGGCATGTG
GCGCTGGATATGGATGTGTTTCCTATGGACAACTCCAGCACGAAGAAAGCGGGGGTTTCCCGCACCTACAAGGGACATGACGGATTCGCGCCCATTGGGG
CCTACCTCGGGGAAGAGGGCTGGTGTGTTGGGATGGAGTTTCGTGAGGGCAAACAGCACAGCCAGAAGGGATTTATTTCCTTTTTGACGCGTGTGTTGCC
CCAAGCCCGCCGCTTGAGCGCCAGTCACCGTTTACTGGTCCGCCTGGATAGCGGGCACGATGCGCTGGAAACGCGTGTGGCGTTGGTAAACGAGGATACC
GATTATATTCTCAAATGGAATCCCCGAACCGCTGATATGACACCCTGGCTGGCCATGGCGGAAGAGGAAGAGTGCTGGGTTGAAACACGTCCTGGAAAGT
TTGTTTCCCGGTTCAGCGTCATTGAGGAGCAAAGCTACGAGGGCCAAAGCTATCAGTTCCGGCGCGTGATGCAGGTGACTGAACGCCGAATTGATCGTCA
CGGACAAGGCTTGCTGGTTCCCGATGTGGAAGTTGAGGGCTGGTGGACATCGCTGGACTTGGTGGAAGAGGATGTCATTGCCCTTTACAAGGCACACGGG
ACATCAGAGCAATTTCACAGCGAGTTCAAGACAGACCTGGATTTGGAGCGGCTTCCGTCGGGCAAGTTTGCCACCAACGCCCTGGTTATGGGAATGGCGG
CATTTGCCTACAATATCCTGCGGTGGATCGGACTTTTGGGTCTGATGGGCAAAGATGGGCCAGTGCGGCACCCAGCTAAGCGTCGGCGTTTGAAGACGGT
TATCCAAGAGATGATCTATCTGGCCGCTCGCTTGGTCAGAAGCGGAAGGCGGCTACGATTGCGCTTTGGACTGAATTGCCCTGCATTCGACGCATTCGAA
CGGGTGTATGAGCGATTTGCTCCTGGAAAGCTGTTGGTTGGATGATCACAGAGCACAGAAATGGCGGCGTGAATGCACGCTAATCCGGGTATTTGCGCCT
TGATATTGAAAAATGGGGGCGTTCGGGGTAAACTGAGACAGCATCTGGCCACATATTGCCGGGAAACAGTGGTCTGACCATATTCTGAGGGCAAAAACAG
GGGTTGATGTGTTGGGAGAAGCGTTCGGTCAACACGCCCCAAAGAAAGTCACCGATTCAGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1341 bp446 aa1051445+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKRFKLEQSEQEIYTATSGLALAGACLDRYVNLDKELKKAQPLRHGISHADIARSYLGLLLQGKSDFEAIAQFRENRFFMEALGIAHVPSIARMRQRLDE
GAESWLSVIECCTVDFLVNAEVPVTCLVTGHVALDMDVFPMDNSSTKKAGVSRTYKGHDGFAPIGAYLGEEGWCVGMEFREGKQHSQKGFISFLTRVLPQ
ARRLSASHRLLVRLDSGHDALETRVALVNEDTDYILKWNPRTADMTPWLAMAEEEECWVETRPGKFVSRFSVIEEQSYEGQSYQFRRVMQVTERRIDRHG
QGLLVPDVEVEGWWTSLDLVEEDVIALYKAHGTSEQFHSEFKTDLDLERLPSGKFATNALVMGMAAFAYNILRWIGLLGLMGKDGPVRHPAKRRRLKTVI
QEMIYLAARLVRSGRRLRLRFGLNCPAFDAFERVYERFAPGKLLVG

 

Blast result :
Comments
ISMasp7 is 61% aa similar to ISAzo40.
References
1] ISfinder annotation (2009)
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Kiss,H., Goodwin,L.A., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N. and Richardson,P. (2006) Direct submission GenBank.