ISGsp2
- Family IS1380
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NZ_ABLJ01000012 | ND | Geobacillus sp. | Geobacillus sp. WCH70 |
DNA section
IS Length : 1677 bp
Ends
IR Length : 13
IRL : CCTGAATCCGTGACAAAACATCTTTACAATGGTCGCAAACCGTTGATACG
IRR : CCTGAATCCGTGATGGTTGGAAATCAACTTTGATTTTGGTGTTAGTTCTA
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| AAGCGCAAAATGTA | AATAA | AACAAGTTAATA | 5 |
| TCTGGTTAATAATA | CAGTA | GTGATGATTACT | 5 |
| AATGGAATCAAGAC | TTCAAG | CAGTGTGAGTAA | 6 |
DNA sequence
CCTGAATCCGTGACAAAACATCTTTACAATGGTCGCAAACCGTTGATACGATAAGGGAAAACGACGTTGACGATTCTTCATCAAGTAGGTGATATGATGA
AAGATTTCCCGATTCGGTTTGTATTGACAGATGAAGCGATTACCCCAAGTGCTGGGCTTGCTCTCGTTGGCTACTTACTCCATCGAACGAAACTGGATAA
ACGGGTAAACGCACTTCGGCTTCCAACGGTTCGTCGAGAAGTGCACATTTCCCATAGCGATGTCATTCGCTCGATGATTGGCTTGCTTGCCACAGGAAAA
ACGGATTTCGATCATATCGAAGCGTATCGTCAGGACGATATCTTTTCGGCATCGATGGGGATTCAGCACGTGCCTTCCTCTCCAACCTTGCGACAACGAC
TCGATCAGCTCGCTTGTCTTCCGATGACCGAAACGATTCTTTGGGAGGAGTCCATACGTCTGTTGATTCAACGACATGCCACTTTGTCCCCTTGTTGGAC
CAAAGGAAAGACGACATGGCTTCCCCTTGATATAGATGGTTCCCCATTTGACAACTCCGATACGAAAAAAGAAGGAGTCAGTCGAACGTATAAAGGATTT
GACGGTTTTACGCCGTTGTTTGCGTATGCAGGGAAGGAAGGGTATCTCGTTCATGCCGAGTTGCGTCCAGGGAAACAACATGTGCAAGACAACATGCCTT
CGTTTTTAACTACCGCCATCCGTCGAGCTCGTCAACTGACTTCATCTCGTCTGCTTGTCCGCATGGATGCAGGAAACGATGCGGAAGCGAATGTGCACGT
ATGTCTAAAGGAAGACGTGGACTTTGTCATCAAGCGAAACTTACGCCGAGAATCGAAAGCGCTTTGGTTCCAGATCGCTTCGCAAAAGGGCAGACGCATC
GATGATGGACAAACCGAAGGAGTACAAACGTATGAGTTATGCCTTCCACAGACCGCAGCGATCGATGGAAACACGTATACGTACGTTCAAGTCACCCAAG
TGACGGAACGGACGATGGAACGCAATGGACAGCTGATGCTCGTTCCTGATTATGAAGTGGAAAGCTATTGGGTGCGGCTCAAAGGATACGAGCATGTTCG
AATGAGCGATGTGCTCGCGTTGTATCATGACCATGCGACATGCGAACAGTTTCATAGCGAACTGAAGAGCGACTTAGATTTAGAGCGGCTTCCATCTGGG
AAGATGAAAACGAATGCGCTCGTGTTGGTCATGGGAGCCTTCGTTTACAATCTTCTTCGTCTGATTGGACAAGATCTATTAAGCGATCCGAGACATCCGT
TGCACCACAAAGTGAAACGCCGTCGCATCAAGACGATTATTCAGACGGTGATCACGATGGCAGGTCGACTCGTCCGCCGATCACGACAGATCTGGATGAA
ACTGACGCGAAGGAGTGGGTACAGTATACTCCTACTGAATGTGTATCAAAAATGGAAAGAGGCAAGATAACAAACAGATGTTCGGGTACTCATATCCATC
ACTCCCCCCTGTACTTTTTTGTCTCTTTTTTGGTTTGTATCTCCATAAAAGAGGATTTATCTCGTTTTCAAACATGAAAGTGGTGCAGGGAATCATCAAA
AAAAGGGATGTATGGATCATATATCCATAGAACTAACACCAAAATCAAAGTTGATTTCCAACCATCACGGATTCAGG
AAGATTTCCCGATTCGGTTTGTATTGACAGATGAAGCGATTACCCCAAGTGCTGGGCTTGCTCTCGTTGGCTACTTACTCCATCGAACGAAACTGGATAA
ACGGGTAAACGCACTTCGGCTTCCAACGGTTCGTCGAGAAGTGCACATTTCCCATAGCGATGTCATTCGCTCGATGATTGGCTTGCTTGCCACAGGAAAA
ACGGATTTCGATCATATCGAAGCGTATCGTCAGGACGATATCTTTTCGGCATCGATGGGGATTCAGCACGTGCCTTCCTCTCCAACCTTGCGACAACGAC
TCGATCAGCTCGCTTGTCTTCCGATGACCGAAACGATTCTTTGGGAGGAGTCCATACGTCTGTTGATTCAACGACATGCCACTTTGTCCCCTTGTTGGAC
CAAAGGAAAGACGACATGGCTTCCCCTTGATATAGATGGTTCCCCATTTGACAACTCCGATACGAAAAAAGAAGGAGTCAGTCGAACGTATAAAGGATTT
GACGGTTTTACGCCGTTGTTTGCGTATGCAGGGAAGGAAGGGTATCTCGTTCATGCCGAGTTGCGTCCAGGGAAACAACATGTGCAAGACAACATGCCTT
CGTTTTTAACTACCGCCATCCGTCGAGCTCGTCAACTGACTTCATCTCGTCTGCTTGTCCGCATGGATGCAGGAAACGATGCGGAAGCGAATGTGCACGT
ATGTCTAAAGGAAGACGTGGACTTTGTCATCAAGCGAAACTTACGCCGAGAATCGAAAGCGCTTTGGTTCCAGATCGCTTCGCAAAAGGGCAGACGCATC
GATGATGGACAAACCGAAGGAGTACAAACGTATGAGTTATGCCTTCCACAGACCGCAGCGATCGATGGAAACACGTATACGTACGTTCAAGTCACCCAAG
TGACGGAACGGACGATGGAACGCAATGGACAGCTGATGCTCGTTCCTGATTATGAAGTGGAAAGCTATTGGGTGCGGCTCAAAGGATACGAGCATGTTCG
AATGAGCGATGTGCTCGCGTTGTATCATGACCATGCGACATGCGAACAGTTTCATAGCGAACTGAAGAGCGACTTAGATTTAGAGCGGCTTCCATCTGGG
AAGATGAAAACGAATGCGCTCGTGTTGGTCATGGGAGCCTTCGTTTACAATCTTCTTCGTCTGATTGGACAAGATCTATTAAGCGATCCGAGACATCCGT
TGCACCACAAAGTGAAACGCCGTCGCATCAAGACGATTATTCAGACGGTGATCACGATGGCAGGTCGACTCGTCCGCCGATCACGACAGATCTGGATGAA
ACTGACGCGAAGGAGTGGGTACAGTATACTCCTACTGAATGTGTATCAAAAATGGAAAGAGGCAAGATAACAAACAGATGTTCGGGTACTCATATCCATC
ACTCCCCCCTGTACTTTTTTGTCTCTTTTTTGGTTTGTATCTCCATAAAAGAGGATTTATCTCGTTTTCAAACATGAAAGTGGTGCAGGGAATCATCAAA
AAAAGGGATGTATGGATCATATATCCATAGAACTAACACCAAAATCAAAGTTGATTTCCAACCATCACGGATTCAGG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1374 bp | 457 aa | 97 | 1470 | + | No |
Chemistry : DDE
ORF sequence :
MKDFPIRFVLTDEAITPSAGLALVGYLLHRTKLDKRVNALRLPTVRREVHISHSDVIRSMIGLLATGKTDFDHIEAYRQDDIFSASMGIQHVPSSPTLRQ
RLDQLACLPMTETILWEESIRLLIQRHATLSPCWTKGKTTWLPLDIDGSPFDNSDTKKEGVSRTYKGFDGFTPLFAYAGKEGYLVHAELRPGKQHVQDNM
PSFLTTAIRRARQLTSSRLLVRMDAGNDAEANVHVCLKEDVDFVIKRNLRRESKALWFQIASQKGRRIDDGQTEGVQTYELCLPQTAAIDGNTYTYVQVT
QVTERTMERNGQLMLVPDYEVESYWVRLKGYEHVRMSDVLALYHDHATCEQFHSELKSDLDLERLPSGKMKTNALVLVMGAFVYNLLRLIGQDLLSDPRH
PLHHKVKRRRIKTIIQTVITMAGRLVRRSRQIWMKLTRRSGYSILLLNVYQKWKEAR
RLDQLACLPMTETILWEESIRLLIQRHATLSPCWTKGKTTWLPLDIDGSPFDNSDTKKEGVSRTYKGFDGFTPLFAYAGKEGYLVHAELRPGKQHVQDNM
PSFLTTAIRRARQLTSSRLLVRMDAGNDAEANVHVCLKEDVDFVIKRNLRRESKALWFQIASQKGRRIDDGQTEGVQTYELCLPQTAAIDGNTYTYVQVT
QVTERTMERNGQLMLVPDYEVESYWVRLKGYEHVRMSDVLALYHDHATCEQFHSELKSDLDLERLPSGKMKTNALVLVMGAFVYNLLRLIGQDLLSDPRH
PLHHKVKRRRIKTIIQTVITMAGRLVRRSRQIWMKLTRRSGYSILLLNVYQKWKEAR
Blast result :
Comments
ISGsp2 is 57% aa similar to ISVva1.
References
1] ISfinder annotation (2009)
2] Copeland,A., Lucas,S., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Larimer,F., Land,M.L., Hauser,L., Mead,D. and Richardson,P. (2008) Direct submission GenBank.
2] Copeland,A., Lucas,S., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Larimer,F., Land,M.L., Hauser,L., Mead,D. and Richardson,P. (2008) Direct submission GenBank.