ISLsp5
- Family IS1380
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| DS995260 | ND | Leptospirillum sp. | Leptospirillum sp. Group II '5-way CG' Scaffold10776 |
DNA section
IS Length : 1759 bp
Ends
IR Length : 18/23
IRL : CCCTGATTCCGATATAGAAGTGTGAAAAAACAAAAAAAGCCCTCTTCCCG
IRR : CCCGAATTCCGATTTAGGATTGGATCCAACCCTCTCGGCCGGTTATGGGG
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| CTCCCTGGAC | CAGAG | GGCGAATGTT | 5 |
DNA sequence
CCCTGATTCCGATATAGAAGTGTGAAAAAACAAAAAAAGCCCTCTTCCCGTTGGATTTTCGGTGAGATACACTCTCACCAAGCAGGTGAAAACCACAACG
GAGAAGGAGGGCTGACGGATATGGTAAACAGGGGACAGGTCAGGATCAAGCTGGAACGGACCGAGGAAGCGCTGACGGGCCAGGGAGGATTTCTGGCCTA
CGGGGAATATCTGAACGGGATGAAGGTCCGGGAGCGGGTCGAACGGCACCTGCCGGCACCGGGAAGCAACCGCGGGTTTTCACCGGGCGTCTTTGTGCAG
AGCCTGGTTTCTCTTCTGACCCTGGGGGGACAGACGCTGTCGGACCTGCGGGAACTGGAACGGGAAAAAGGTCTTCTGGCGCTGTTGGGGCAGACCGTCA
TTCCCGACGAAGACACGGTGGGGCAGTGGCTTCGGAGGATGGGGGATCCGGCAAAGGAGCAGAAGGGGCTTGTGGGACTGGGGAAGGTTCGGGACGAGGT
CAACCAGGAGATTCTGTCCCGGGACGGGGTGAAGGATTATACCCTGGACCTCGATGCGAGCTTCGTCGAAGCGGACAAGGAGTCGGCCCGGTATTCGTAC
CTGAACGAAAAAGGCTACATGCCGATGATGGGGGCGTTCTACGAGACGCCGGTCTTTGTGGACGACGAGTTCCGGGAGGGGAATGTCTCCCCGCAAACGG
GACATGTCGCCGTCTACCGACGCAGTCGGGCGCTGGCGGAAAGTGTGGGGAAGACAGTGGCCCGAGTGCGGGCCGACAGCGCCTCCTACAACGCGGAACT
GATCAATGCGCTGACGGCGGACGGGGTTCAGTGGACCATTACGGCGGACAAGAACAGCGCCGTCATGGAACTGATCCACCGGATCGACGAACAGGCCTGG
GTTCCGGTCACCCGTTCCGGAAGCGGTGCGGCTCTGGAAGAACCCTGCGAGGTGGCGGAAACGCTCCATACGATGAAAGAGACCCCGGAAGCGTTCCGGT
TGATCGTGAAGCGGGTGCGGGAGCGCTCTGCCACCCCCCTGTTCCGAAACATGGTCTCCTACCGATATTGGGTGGTGGCGACCAATTTCGGACCGGAATG
GAGCCCGCAACAGGTGCTGGGCTGGCACCAGCTGAGAGGCCACTTCGAAAACTTCTTCAAGGAACTCAAGAACGGGGTGGGGATGGAGTACATGCCCACC
GGCGACCTGCATGCGAATGCGGTGTTCTTCCGGGTCGGCGTTCTGGCCTACAACCTGTTCGTGGGGTTCCGGAGAGACCTTCTGCCCGACTCCAGTCAAA
GCTGGAGCCTGCGAACGGTCCGGTGGAAGCTCCTGTCCATGGCGGGAAAGATTGTGCGGCATGCCCGGACGATCGTTCTCAAACTGGCGGTGGATGACGG
GTCTCTGGAATTCCTGTCCCGGATTCGCGGTCAATGCCAGGAGCTGTTCGGTTCGGCCTGAGGCGAACGTCCGGACTCGGGAAAAAGCGGAAGGTCTTCA
GCCCAAAGAGCCGGACAGGTGCGGAAGTGGGAATTTCCGAGGAAGTGGCAGTGAAGTCGTTGACAGTCCATGATTCTCATGTAAATCCTCTCGGAACTCC
CTTGATGGTCTCCCCTGTTCGAGCAAACGGCAGGAGTTTGTTCCGGGAAGACAAGAGGTCGAAGATGACCTGATCGGATGGGAGTGAGGTTGAATTTTAA
AAAATGTCCCCCCATAACCGGCCGAGAGGGTTGGATCCAATCCTAAATCGGAATTCGGG
GAGAAGGAGGGCTGACGGATATGGTAAACAGGGGACAGGTCAGGATCAAGCTGGAACGGACCGAGGAAGCGCTGACGGGCCAGGGAGGATTTCTGGCCTA
CGGGGAATATCTGAACGGGATGAAGGTCCGGGAGCGGGTCGAACGGCACCTGCCGGCACCGGGAAGCAACCGCGGGTTTTCACCGGGCGTCTTTGTGCAG
AGCCTGGTTTCTCTTCTGACCCTGGGGGGACAGACGCTGTCGGACCTGCGGGAACTGGAACGGGAAAAAGGTCTTCTGGCGCTGTTGGGGCAGACCGTCA
TTCCCGACGAAGACACGGTGGGGCAGTGGCTTCGGAGGATGGGGGATCCGGCAAAGGAGCAGAAGGGGCTTGTGGGACTGGGGAAGGTTCGGGACGAGGT
CAACCAGGAGATTCTGTCCCGGGACGGGGTGAAGGATTATACCCTGGACCTCGATGCGAGCTTCGTCGAAGCGGACAAGGAGTCGGCCCGGTATTCGTAC
CTGAACGAAAAAGGCTACATGCCGATGATGGGGGCGTTCTACGAGACGCCGGTCTTTGTGGACGACGAGTTCCGGGAGGGGAATGTCTCCCCGCAAACGG
GACATGTCGCCGTCTACCGACGCAGTCGGGCGCTGGCGGAAAGTGTGGGGAAGACAGTGGCCCGAGTGCGGGCCGACAGCGCCTCCTACAACGCGGAACT
GATCAATGCGCTGACGGCGGACGGGGTTCAGTGGACCATTACGGCGGACAAGAACAGCGCCGTCATGGAACTGATCCACCGGATCGACGAACAGGCCTGG
GTTCCGGTCACCCGTTCCGGAAGCGGTGCGGCTCTGGAAGAACCCTGCGAGGTGGCGGAAACGCTCCATACGATGAAAGAGACCCCGGAAGCGTTCCGGT
TGATCGTGAAGCGGGTGCGGGAGCGCTCTGCCACCCCCCTGTTCCGAAACATGGTCTCCTACCGATATTGGGTGGTGGCGACCAATTTCGGACCGGAATG
GAGCCCGCAACAGGTGCTGGGCTGGCACCAGCTGAGAGGCCACTTCGAAAACTTCTTCAAGGAACTCAAGAACGGGGTGGGGATGGAGTACATGCCCACC
GGCGACCTGCATGCGAATGCGGTGTTCTTCCGGGTCGGCGTTCTGGCCTACAACCTGTTCGTGGGGTTCCGGAGAGACCTTCTGCCCGACTCCAGTCAAA
GCTGGAGCCTGCGAACGGTCCGGTGGAAGCTCCTGTCCATGGCGGGAAAGATTGTGCGGCATGCCCGGACGATCGTTCTCAAACTGGCGGTGGATGACGG
GTCTCTGGAATTCCTGTCCCGGATTCGCGGTCAATGCCAGGAGCTGTTCGGTTCGGCCTGAGGCGAACGTCCGGACTCGGGAAAAAGCGGAAGGTCTTCA
GCCCAAAGAGCCGGACAGGTGCGGAAGTGGGAATTTCCGAGGAAGTGGCAGTGAAGTCGTTGACAGTCCATGATTCTCATGTAAATCCTCTCGGAACTCC
CTTGATGGTCTCCCCTGTTCGAGCAAACGGCAGGAGTTTGTTCCGGGAAGACAAGAGGTCGAAGATGACCTGATCGGATGGGAGTGAGGTTGAATTTTAA
AAAATGTCCCCCCATAACCGGCCGAGAGGGTTGGATCCAATCCTAAATCGGAATTCGGG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1341 bp | 446 aa | 121 | 1461 | + | No |
Chemistry : DDE
ORF sequence :
MVNRGQVRIKLERTEEALTGQGGFLAYGEYLNGMKVRERVERHLPAPGSNRGFSPGVFVQSLVSLLTLGGQTLSDLRELEREKGLLALLGQTVIPDEDTV
GQWLRRMGDPAKEQKGLVGLGKVRDEVNQEILSRDGVKDYTLDLDASFVEADKESARYSYLNEKGYMPMMGAFYETPVFVDDEFREGNVSPQTGHVAVYR
RSRALAESVGKTVARVRADSASYNAELINALTADGVQWTITADKNSAVMELIHRIDEQAWVPVTRSGSGAALEEPCEVAETLHTMKETPEAFRLIVKRVR
ERSATPLFRNMVSYRYWVVATNFGPEWSPQQVLGWHQLRGHFENFFKELKNGVGMEYMPTGDLHANAVFFRVGVLAYNLFVGFRRDLLPDSSQSWSLRTV
RWKLLSMAGKIVRHARTIVLKLAVDDGSLEFLSRIRGQCQELFGSA
GQWLRRMGDPAKEQKGLVGLGKVRDEVNQEILSRDGVKDYTLDLDASFVEADKESARYSYLNEKGYMPMMGAFYETPVFVDDEFREGNVSPQTGHVAVYR
RSRALAESVGKTVARVRADSASYNAELINALTADGVQWTITADKNSAVMELIHRIDEQAWVPVTRSGSGAALEEPCEVAETLHTMKETPEAFRLIVKRVR
ERSATPLFRNMVSYRYWVVATNFGPEWSPQQVLGWHQLRGHFENFFKELKNGVGMEYMPTGDLHANAVFFRVGVLAYNLFVGFRRDLLPDSSQSWSLRTV
RWKLLSMAGKIVRHARTIVLKLAVDDGSLEFLSRIRGQCQELFGSA
Blast result :
Comments
ISLsp5 is 59% aa similar to ISLsp3.
References
1] ISfinder annotation (2009)
2] Tyson,G.W., Chapman,J., Hugenholtz,P., Allen,E.E., Ram,R.J., Richardson,P.M., Solovyev,V.V., Rubin,E.M., Rokhsar,D.S. and Banfield,J.F. (2004) Nature 428 (6978), 37-43
3] Simmons,S.L., Dibartolo,G., Denef,V.J., Goltsman,D.S., Thelen,M.P. and Banfield,J.F. (2008) PLoS Biol. 6 (7), E177
2] Tyson,G.W., Chapman,J., Hugenholtz,P., Allen,E.E., Ram,R.J., Richardson,P.M., Solovyev,V.V., Rubin,E.M., Rokhsar,D.S. and Banfield,J.F. (2004) Nature 428 (6978), 37-43
3] Simmons,S.L., Dibartolo,G., Denef,V.J., Goltsman,D.S., Thelen,M.P. and Banfield,J.F. (2008) PLoS Biol. 6 (7), E177