ISBfi1

  • Family IS1380
  • Group IS942
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_ABXI01000048 ND Bacteroides finegoldii
Bacteroides sp. D1
Bacteroides finegoldii DSM 17565
DNA section
IS Length : 1615 bp

Ends


IR Length : 13/15

IRL : CCTTAATTCCGCAACACTATAAATTTTAACTTTTATAATATCCTGAACAA
IRR : CCTAAAATCCGCAACCTGTAATATTTTTGATATCTGGGGTTGCAGATACC

Insertion site


Left flankDirect repeatRight flankDR Length
TTCATAGTATTGTTATTAATGTACAAAAGCTCTTT0
TTCATAGTATTGTTATTAATGTACAAAAGCTCTTT0
TTCATAGTATTGTTATTAATGTACAAAAGCTCTTT0

DNA sequence

CCTTAATTCCGCAACACTATAAATTTTAACTTTTATAATATCCTGAACAACAAAAAGTTCTTGGACAAGCCAAGCGGCAAAGCCGAGCGGCTCAGGATTT
TGTCATGTCAAAGGATTCACTTAACTTAGTGTTGCAAAAATAGTCAAACAAAACCTCATCAAGCATGGTAAAAGTACAAATAAAATCCGAGAAACTCACA
TCTTTTGGTGGTATATTTCCAATTATGGAGAAATTCGACAGGATGTTGTCTTGTACAATAGACTCTACTTTAGGTTTGCGTAGCAAAGTGTATGGCTATC
AATATAGCGAGATAATACGTTCTCTGATGTGCGTATATTTCTGTGGAGGGTCATGTGTCGAAGACGTGACCTCACACCTTATGGAAGCACTTTGCTTGCA
TCCACCCCTCCGTACATGCAGCGCAGACACAATACTTAGGGCCATTCGTGAATTGACCACACCGAATCTGACCTACAGGTCTGATTCGGGCAAAAGCTAC
GACTTCAACGTGGCTTCCGACCTTAACAATCTGCTTGTCAATGCATTGCTGGCAACTGGACAGTTGCTGCCAGACAATGAATATGACTTTGATTTTGACC
ACCAGTTCATTGAGACGGAGAAATTTGACGCAAAAATGACCTACAAGAAGTTTACCGGTTACAGTCCAGGAATAGCAACGGTCGGCGATGTCATCGTCGG
GATAGAGAACCGCGACGGCAATACCAATGTCCGTTTCCATCAGGAAGACACTCTAAAACGTATTTTTGAGCGTTTGGAGAATGCCAGAATACATATAAAC
CGTGCGAGGATGGATTGTGGCTCATGCTCTGAGGCTATGGTGGAAATGGTGGAGAAGCACAGTCGGCATTTTTATATCCGCGCAAACAGGTGTGTATCGT
TGTATGACGATATCTTTGCCTTGCGCGGATGGAAGACCGAATACATAAACGGTCACGAGTTTGAGATATGCTCCATCATTGCAGAGAAATGGGTCGGCAA
AGCGTACCGCCTTGTCATACAGCGGCAAAGAAGCATCAACAAGGAACTCGACCTGTGGGAAGGGGAATATACATACAGATGCATACTGACAAATGACTAT
ACTTCGACAGACCGTGACATCGTGGAGTATTACAACAAGCGTGGCGGTGCTGAGCGTGTATTGGACGACATGAACAACGGCTTTGGCTGGAAACGGCTGC
CAAAATCGTTCATGGCGGAAAACACGGTGTTCCTGCTTCTGACCGCTTTAATACGAAACTTTTACAGACACCTCATATCTGACGCAAACATGAAGAGCTT
TGGACTTAAACGCACAAGCAGAATCAAAACTTTTGTATTCAAGTATGTTTCTGTCCCTGCAAAATGGATTAAGACTGCAAGACAGCACATACTGAACATA
TACACAAGCAATGGCATACATGATGGCCTTCAAATTTGATTTTGGGTAGCCTCAAATCTTCGTGGCCTTTTGCGTATTGCCTCAAGTCGCATCATGGGGT
AAGGGGATTTTGTCTCTTGCGACTGCACCATTAGGGTTCTTTACGAAAACGAGTCGTTTTAGAGAGGTATCTGCAACCCCAGATATCAAAAATATTACAG
GTTGCGGATTTTAGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1275 bp424 aa1651439+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MVKVQIKSEKLTSFGGIFPIMEKFDRMLSCTIDSTLGLRSKVYGYQYSEIIRSLMCVYFCGGSCVEDVTSHLMEALCLHPPLRTCSADTILRAIRELTTP
NLTYRSDSGKSYDFNVASDLNNLLVNALLATGQLLPDNEYDFDFDHQFIETEKFDAKMTYKKFTGYSPGIATVGDVIVGIENRDGNTNVRFHQEDTLKRI
FERLENARIHINRARMDCGSCSEAMVEMVEKHSRHFYIRANRCVSLYDDIFALRGWKTEYINGHEFEICSIIAEKWVGKAYRLVIQRQRSINKELDLWEG
EYTYRCILTNDYTSTDRDIVEYYNKRGGAERVLDDMNNGFGWKRLPKSFMAENTVFLLLTALIRNFYRHLISDANMKSFGLKRTSRIKTFVFKYVSVPAK
WIKTARQHILNIYTSNGIHDGLQI

 

Blast result :
Comments
ISBfi1 is 82% aa similar to IS615.
References
1] ISfinder annotation (2009)
2] Sudarsanam,P., Ley,R., Guruge,J., Turnbaugh,P.J., Mahowald,M., Liep,D. and Gordon,J. (2008) Direct submission GenBank.