ISBfi1
- Family IS1380
- Group IS942
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_ABXI01000048 | ND | Bacteroides finegoldii | Bacteroides sp. D1 Bacteroides finegoldii DSM 17565 |
DNA section
IS Length : 1615 bp
Ends
IR Length : 13/15
IRL : CCTTAATTCCGCAACACTATAAATTTTAACTTTTATAATATCCTGAACAA
IRR : CCTAAAATCCGCAACCTGTAATATTTTTGATATCTGGGGTTGCAGATACC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTCATAGTATTGTTATTA | ATGTACAAAAGCTCTTT | 0 | |
TTCATAGTATTGTTATTA | ATGTACAAAAGCTCTTT | 0 | |
TTCATAGTATTGTTATTA | ATGTACAAAAGCTCTTT | 0 |
DNA sequence
CCTTAATTCCGCAACACTATAAATTTTAACTTTTATAATATCCTGAACAACAAAAAGTTCTTGGACAAGCCAAGCGGCAAAGCCGAGCGGCTCAGGATTT
TGTCATGTCAAAGGATTCACTTAACTTAGTGTTGCAAAAATAGTCAAACAAAACCTCATCAAGCATGGTAAAAGTACAAATAAAATCCGAGAAACTCACA
TCTTTTGGTGGTATATTTCCAATTATGGAGAAATTCGACAGGATGTTGTCTTGTACAATAGACTCTACTTTAGGTTTGCGTAGCAAAGTGTATGGCTATC
AATATAGCGAGATAATACGTTCTCTGATGTGCGTATATTTCTGTGGAGGGTCATGTGTCGAAGACGTGACCTCACACCTTATGGAAGCACTTTGCTTGCA
TCCACCCCTCCGTACATGCAGCGCAGACACAATACTTAGGGCCATTCGTGAATTGACCACACCGAATCTGACCTACAGGTCTGATTCGGGCAAAAGCTAC
GACTTCAACGTGGCTTCCGACCTTAACAATCTGCTTGTCAATGCATTGCTGGCAACTGGACAGTTGCTGCCAGACAATGAATATGACTTTGATTTTGACC
ACCAGTTCATTGAGACGGAGAAATTTGACGCAAAAATGACCTACAAGAAGTTTACCGGTTACAGTCCAGGAATAGCAACGGTCGGCGATGTCATCGTCGG
GATAGAGAACCGCGACGGCAATACCAATGTCCGTTTCCATCAGGAAGACACTCTAAAACGTATTTTTGAGCGTTTGGAGAATGCCAGAATACATATAAAC
CGTGCGAGGATGGATTGTGGCTCATGCTCTGAGGCTATGGTGGAAATGGTGGAGAAGCACAGTCGGCATTTTTATATCCGCGCAAACAGGTGTGTATCGT
TGTATGACGATATCTTTGCCTTGCGCGGATGGAAGACCGAATACATAAACGGTCACGAGTTTGAGATATGCTCCATCATTGCAGAGAAATGGGTCGGCAA
AGCGTACCGCCTTGTCATACAGCGGCAAAGAAGCATCAACAAGGAACTCGACCTGTGGGAAGGGGAATATACATACAGATGCATACTGACAAATGACTAT
ACTTCGACAGACCGTGACATCGTGGAGTATTACAACAAGCGTGGCGGTGCTGAGCGTGTATTGGACGACATGAACAACGGCTTTGGCTGGAAACGGCTGC
CAAAATCGTTCATGGCGGAAAACACGGTGTTCCTGCTTCTGACCGCTTTAATACGAAACTTTTACAGACACCTCATATCTGACGCAAACATGAAGAGCTT
TGGACTTAAACGCACAAGCAGAATCAAAACTTTTGTATTCAAGTATGTTTCTGTCCCTGCAAAATGGATTAAGACTGCAAGACAGCACATACTGAACATA
TACACAAGCAATGGCATACATGATGGCCTTCAAATTTGATTTTGGGTAGCCTCAAATCTTCGTGGCCTTTTGCGTATTGCCTCAAGTCGCATCATGGGGT
AAGGGGATTTTGTCTCTTGCGACTGCACCATTAGGGTTCTTTACGAAAACGAGTCGTTTTAGAGAGGTATCTGCAACCCCAGATATCAAAAATATTACAG
GTTGCGGATTTTAGG
TGTCATGTCAAAGGATTCACTTAACTTAGTGTTGCAAAAATAGTCAAACAAAACCTCATCAAGCATGGTAAAAGTACAAATAAAATCCGAGAAACTCACA
TCTTTTGGTGGTATATTTCCAATTATGGAGAAATTCGACAGGATGTTGTCTTGTACAATAGACTCTACTTTAGGTTTGCGTAGCAAAGTGTATGGCTATC
AATATAGCGAGATAATACGTTCTCTGATGTGCGTATATTTCTGTGGAGGGTCATGTGTCGAAGACGTGACCTCACACCTTATGGAAGCACTTTGCTTGCA
TCCACCCCTCCGTACATGCAGCGCAGACACAATACTTAGGGCCATTCGTGAATTGACCACACCGAATCTGACCTACAGGTCTGATTCGGGCAAAAGCTAC
GACTTCAACGTGGCTTCCGACCTTAACAATCTGCTTGTCAATGCATTGCTGGCAACTGGACAGTTGCTGCCAGACAATGAATATGACTTTGATTTTGACC
ACCAGTTCATTGAGACGGAGAAATTTGACGCAAAAATGACCTACAAGAAGTTTACCGGTTACAGTCCAGGAATAGCAACGGTCGGCGATGTCATCGTCGG
GATAGAGAACCGCGACGGCAATACCAATGTCCGTTTCCATCAGGAAGACACTCTAAAACGTATTTTTGAGCGTTTGGAGAATGCCAGAATACATATAAAC
CGTGCGAGGATGGATTGTGGCTCATGCTCTGAGGCTATGGTGGAAATGGTGGAGAAGCACAGTCGGCATTTTTATATCCGCGCAAACAGGTGTGTATCGT
TGTATGACGATATCTTTGCCTTGCGCGGATGGAAGACCGAATACATAAACGGTCACGAGTTTGAGATATGCTCCATCATTGCAGAGAAATGGGTCGGCAA
AGCGTACCGCCTTGTCATACAGCGGCAAAGAAGCATCAACAAGGAACTCGACCTGTGGGAAGGGGAATATACATACAGATGCATACTGACAAATGACTAT
ACTTCGACAGACCGTGACATCGTGGAGTATTACAACAAGCGTGGCGGTGCTGAGCGTGTATTGGACGACATGAACAACGGCTTTGGCTGGAAACGGCTGC
CAAAATCGTTCATGGCGGAAAACACGGTGTTCCTGCTTCTGACCGCTTTAATACGAAACTTTTACAGACACCTCATATCTGACGCAAACATGAAGAGCTT
TGGACTTAAACGCACAAGCAGAATCAAAACTTTTGTATTCAAGTATGTTTCTGTCCCTGCAAAATGGATTAAGACTGCAAGACAGCACATACTGAACATA
TACACAAGCAATGGCATACATGATGGCCTTCAAATTTGATTTTGGGTAGCCTCAAATCTTCGTGGCCTTTTGCGTATTGCCTCAAGTCGCATCATGGGGT
AAGGGGATTTTGTCTCTTGCGACTGCACCATTAGGGTTCTTTACGAAAACGAGTCGTTTTAGAGAGGTATCTGCAACCCCAGATATCAAAAATATTACAG
GTTGCGGATTTTAGG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1275 bp | 424 aa | 165 | 1439 | + | No |
Chemistry : DDE
ORF sequence :
MVKVQIKSEKLTSFGGIFPIMEKFDRMLSCTIDSTLGLRSKVYGYQYSEIIRSLMCVYFCGGSCVEDVTSHLMEALCLHPPLRTCSADTILRAIRELTTP
NLTYRSDSGKSYDFNVASDLNNLLVNALLATGQLLPDNEYDFDFDHQFIETEKFDAKMTYKKFTGYSPGIATVGDVIVGIENRDGNTNVRFHQEDTLKRI
FERLENARIHINRARMDCGSCSEAMVEMVEKHSRHFYIRANRCVSLYDDIFALRGWKTEYINGHEFEICSIIAEKWVGKAYRLVIQRQRSINKELDLWEG
EYTYRCILTNDYTSTDRDIVEYYNKRGGAERVLDDMNNGFGWKRLPKSFMAENTVFLLLTALIRNFYRHLISDANMKSFGLKRTSRIKTFVFKYVSVPAK
WIKTARQHILNIYTSNGIHDGLQI
NLTYRSDSGKSYDFNVASDLNNLLVNALLATGQLLPDNEYDFDFDHQFIETEKFDAKMTYKKFTGYSPGIATVGDVIVGIENRDGNTNVRFHQEDTLKRI
FERLENARIHINRARMDCGSCSEAMVEMVEKHSRHFYIRANRCVSLYDDIFALRGWKTEYINGHEFEICSIIAEKWVGKAYRLVIQRQRSINKELDLWEG
EYTYRCILTNDYTSTDRDIVEYYNKRGGAERVLDDMNNGFGWKRLPKSFMAENTVFLLLTALIRNFYRHLISDANMKSFGLKRTSRIKTFVFKYVSVPAK
WIKTARQHILNIYTSNGIHDGLQI
Blast result :
Comments
ISBfi1 is 82% aa similar to IS615.
References
1] ISfinder annotation (2009)
2] Sudarsanam,P., Ley,R., Guruge,J., Turnbaugh,P.J., Mahowald,M., Liep,D. and Gordon,J. (2008) Direct submission GenBank.
2] Sudarsanam,P., Ley,R., Guruge,J., Turnbaugh,P.J., Mahowald,M., Liep,D. and Gordon,J. (2008) Direct submission GenBank.