ISRme16

  • Family IS5
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_007336 ND Ralstonia eutropha
Ralstonia eutropha JMP134 megaplasmid
DNA section
IS Length : 1331 bp

Ends


IR Length : 20/24

IRL : CAGGCTGCTGAAGTACCTCCAGCGGACGTCAGCGCGACGGCTGGCTGAAG
IRR : CAGGTTGCTGAAGTACTCATCGCGCAAACGATGAGTCTTCCCCTTCAAGG

Insertion site


Left flankDirect repeatRight flankDR Length
CGGTCATTGACCGGCCCTAGGCTGTAAAGAATCGG4

DNA sequence

CAGGCTGCTGAAGTACCTCCAGCGGACGTCAGCGCGACGGCTGGCTGAAGCGTTGCTTTGAGGATCCCATCGAATCCTACATTTATGCGCGGCGCAGACA
CCTTCACGGAAAGCTTGTTCACCATGCGGAGGCTGGATGATTTCGTACCGAAGGCGCACCCACTGCGTTCGATCCGCACTATGGTCAACCAGGCGCTGGT
GAAGATGGACAGGTTGTTTGCGCAGATGTACGAGCCCGATATCAAGGGTGGCCAGCCCAGCATTGCGCCGGAAAAGCTGCTACGAGCCATGCTGCTGCAG
GTGCTCTACAGCATTCGTTCCGAACGTCAGCTCATGGAGCAGGCGCAGTACAACCTGCTGTTTCGCTGGTTCATCGGGCTGTCGATGGACGACCCAGTTT
GGGTGCCCACGGTCTTCACCAAGAACCGCGAACGCCTGATCAAGCATGATGCAGTGATCCAATTTTTCAACGAGGTGCTGGCGATCGCGCAGAAGAAGAA
TTGGCTGTCGGGTGAGCACTTCAGCGTGGACGGCACGCTGATTCAGGCGTGGGCAGGCCACAAGAGCTTCGTGCGCAAGGATGGAGGCGACAAGGACGAC
AACGACGGCGGCAGCTTCAAGGGGCGCAAGCGCAGCAACGAGACGCATGAGTCCGAGACCGATCCCGATGCCAAGCTCTACCGCAAGGGCAAGACAGCCA
GCGAGCTTCGCTACATGGGTCATACCCTGAGCGACAACCGCCATGGCCTGGTGGTGAGCGCCATGGTGACCAATGCGGACGGACACGCCGAGCGCGAGGC
CGCAAAGGTCATGCTCAACGATGCCAGGCAGGTGATTGAAGACCTGAATGTGGAAGTCACCGTGGGCGCCGACAAGGGCTATGACGCGCACGAGTTCATT
GAGGCCTGCCTGGAAATTAGGGTGACGCCCCACGTGGCGCAGAACACATCGGGGCGTCGCTCGGCCGTTCCTGATGCCATTGCTTCCAGCGCCGGTTATG
CGGTCTCGCAACAAAAGCGCAAGCTGATCGAACAGGGATTTGGGTGGGTCAAGACCGTGGGACGCCTGCGTCAGGCGATGGTGCGCGGCCTGAAGAAAGT
CGATCAGATGTTTGTACTGAGCATGGCCGCCTACAACCTCGTGCGCATGCGCTCGCTGGGACAAATCCGTCCGCAGTTGCAGTAATCGCGGTATTGAAGC
CGAAAATGAGCGTCAAAACGCGGAAAAAGTCGATGCAGTGACGCTCAGCTTCCGGATTGTGAAAAATAGCGAACCTACCAGCCTTGAAGGGGAAGACTCA
TCGTTTGCGCGATGAGTACTTCAGCAACCTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1101 bp366 aa851185+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MRGADTFTESLFTMRRLDDFVPKAHPLRSIRTMVNQALVKMDRLFAQMYEPDIKGGQPSIAPEKLLRAMLLQVLYSIRSERQLMEQAQYNLLFRWFIGLS
MDDPVWVPTVFTKNRERLIKHDAVIQFFNEVLAIAQKKNWLSGEHFSVDGTLIQAWAGHKSFVRKDGGDKDDNDGGSFKGRKRSNETHESETDPDAKLYR
KGKTASELRYMGHTLSDNRHGLVVSAMVTNADGHAEREAAKVMLNDARQVIEDLNVEVTVGADKGYDAHEFIEACLEIRVTPHVAQNTSGRRSAVPDAIA
SSAGYAVSQQKRKLIEQGFGWVKTVGRLRQAMVRGLKKVDQMFVLSMAAYNLVRMRSLGQIRPQLQ

 

Blast result :
Comments
ISRme16 is 95% aa similar to ISRme1.
References
1] ISfinder annotation (2009)
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina,T., Hammon,N., Israni,S., Pitluck,S., Goltsman,E., Martinez,M., Vergez,L., Larimer,F., Land,M., Lykidis,A. and Richardson,P. (2005) Direct submission GenBank.