ISRme16
- Family IS5
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_007336 | ND | Ralstonia eutropha | Ralstonia eutropha JMP134 megaplasmid |
DNA section
IS Length : 1331 bp
Ends
IR Length : 20/24
IRL : CAGGCTGCTGAAGTACCTCCAGCGGACGTCAGCGCGACGGCTGGCTGAAG
IRR : CAGGTTGCTGAAGTACTCATCGCGCAAACGATGAGTCTTCCCCTTCAAGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CGGTCATTGACCGGCC | CTAG | GCTGTAAAGAATCGG | 4 |
DNA sequence
CAGGCTGCTGAAGTACCTCCAGCGGACGTCAGCGCGACGGCTGGCTGAAGCGTTGCTTTGAGGATCCCATCGAATCCTACATTTATGCGCGGCGCAGACA
CCTTCACGGAAAGCTTGTTCACCATGCGGAGGCTGGATGATTTCGTACCGAAGGCGCACCCACTGCGTTCGATCCGCACTATGGTCAACCAGGCGCTGGT
GAAGATGGACAGGTTGTTTGCGCAGATGTACGAGCCCGATATCAAGGGTGGCCAGCCCAGCATTGCGCCGGAAAAGCTGCTACGAGCCATGCTGCTGCAG
GTGCTCTACAGCATTCGTTCCGAACGTCAGCTCATGGAGCAGGCGCAGTACAACCTGCTGTTTCGCTGGTTCATCGGGCTGTCGATGGACGACCCAGTTT
GGGTGCCCACGGTCTTCACCAAGAACCGCGAACGCCTGATCAAGCATGATGCAGTGATCCAATTTTTCAACGAGGTGCTGGCGATCGCGCAGAAGAAGAA
TTGGCTGTCGGGTGAGCACTTCAGCGTGGACGGCACGCTGATTCAGGCGTGGGCAGGCCACAAGAGCTTCGTGCGCAAGGATGGAGGCGACAAGGACGAC
AACGACGGCGGCAGCTTCAAGGGGCGCAAGCGCAGCAACGAGACGCATGAGTCCGAGACCGATCCCGATGCCAAGCTCTACCGCAAGGGCAAGACAGCCA
GCGAGCTTCGCTACATGGGTCATACCCTGAGCGACAACCGCCATGGCCTGGTGGTGAGCGCCATGGTGACCAATGCGGACGGACACGCCGAGCGCGAGGC
CGCAAAGGTCATGCTCAACGATGCCAGGCAGGTGATTGAAGACCTGAATGTGGAAGTCACCGTGGGCGCCGACAAGGGCTATGACGCGCACGAGTTCATT
GAGGCCTGCCTGGAAATTAGGGTGACGCCCCACGTGGCGCAGAACACATCGGGGCGTCGCTCGGCCGTTCCTGATGCCATTGCTTCCAGCGCCGGTTATG
CGGTCTCGCAACAAAAGCGCAAGCTGATCGAACAGGGATTTGGGTGGGTCAAGACCGTGGGACGCCTGCGTCAGGCGATGGTGCGCGGCCTGAAGAAAGT
CGATCAGATGTTTGTACTGAGCATGGCCGCCTACAACCTCGTGCGCATGCGCTCGCTGGGACAAATCCGTCCGCAGTTGCAGTAATCGCGGTATTGAAGC
CGAAAATGAGCGTCAAAACGCGGAAAAAGTCGATGCAGTGACGCTCAGCTTCCGGATTGTGAAAAATAGCGAACCTACCAGCCTTGAAGGGGAAGACTCA
TCGTTTGCGCGATGAGTACTTCAGCAACCTG
CCTTCACGGAAAGCTTGTTCACCATGCGGAGGCTGGATGATTTCGTACCGAAGGCGCACCCACTGCGTTCGATCCGCACTATGGTCAACCAGGCGCTGGT
GAAGATGGACAGGTTGTTTGCGCAGATGTACGAGCCCGATATCAAGGGTGGCCAGCCCAGCATTGCGCCGGAAAAGCTGCTACGAGCCATGCTGCTGCAG
GTGCTCTACAGCATTCGTTCCGAACGTCAGCTCATGGAGCAGGCGCAGTACAACCTGCTGTTTCGCTGGTTCATCGGGCTGTCGATGGACGACCCAGTTT
GGGTGCCCACGGTCTTCACCAAGAACCGCGAACGCCTGATCAAGCATGATGCAGTGATCCAATTTTTCAACGAGGTGCTGGCGATCGCGCAGAAGAAGAA
TTGGCTGTCGGGTGAGCACTTCAGCGTGGACGGCACGCTGATTCAGGCGTGGGCAGGCCACAAGAGCTTCGTGCGCAAGGATGGAGGCGACAAGGACGAC
AACGACGGCGGCAGCTTCAAGGGGCGCAAGCGCAGCAACGAGACGCATGAGTCCGAGACCGATCCCGATGCCAAGCTCTACCGCAAGGGCAAGACAGCCA
GCGAGCTTCGCTACATGGGTCATACCCTGAGCGACAACCGCCATGGCCTGGTGGTGAGCGCCATGGTGACCAATGCGGACGGACACGCCGAGCGCGAGGC
CGCAAAGGTCATGCTCAACGATGCCAGGCAGGTGATTGAAGACCTGAATGTGGAAGTCACCGTGGGCGCCGACAAGGGCTATGACGCGCACGAGTTCATT
GAGGCCTGCCTGGAAATTAGGGTGACGCCCCACGTGGCGCAGAACACATCGGGGCGTCGCTCGGCCGTTCCTGATGCCATTGCTTCCAGCGCCGGTTATG
CGGTCTCGCAACAAAAGCGCAAGCTGATCGAACAGGGATTTGGGTGGGTCAAGACCGTGGGACGCCTGCGTCAGGCGATGGTGCGCGGCCTGAAGAAAGT
CGATCAGATGTTTGTACTGAGCATGGCCGCCTACAACCTCGTGCGCATGCGCTCGCTGGGACAAATCCGTCCGCAGTTGCAGTAATCGCGGTATTGAAGC
CGAAAATGAGCGTCAAAACGCGGAAAAAGTCGATGCAGTGACGCTCAGCTTCCGGATTGTGAAAAATAGCGAACCTACCAGCCTTGAAGGGGAAGACTCA
TCGTTTGCGCGATGAGTACTTCAGCAACCTG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1101 bp | 366 aa | 85 | 1185 | + | No |
Chemistry : DDE
ORF sequence :
MRGADTFTESLFTMRRLDDFVPKAHPLRSIRTMVNQALVKMDRLFAQMYEPDIKGGQPSIAPEKLLRAMLLQVLYSIRSERQLMEQAQYNLLFRWFIGLS
MDDPVWVPTVFTKNRERLIKHDAVIQFFNEVLAIAQKKNWLSGEHFSVDGTLIQAWAGHKSFVRKDGGDKDDNDGGSFKGRKRSNETHESETDPDAKLYR
KGKTASELRYMGHTLSDNRHGLVVSAMVTNADGHAEREAAKVMLNDARQVIEDLNVEVTVGADKGYDAHEFIEACLEIRVTPHVAQNTSGRRSAVPDAIA
SSAGYAVSQQKRKLIEQGFGWVKTVGRLRQAMVRGLKKVDQMFVLSMAAYNLVRMRSLGQIRPQLQ
MDDPVWVPTVFTKNRERLIKHDAVIQFFNEVLAIAQKKNWLSGEHFSVDGTLIQAWAGHKSFVRKDGGDKDDNDGGSFKGRKRSNETHESETDPDAKLYR
KGKTASELRYMGHTLSDNRHGLVVSAMVTNADGHAEREAAKVMLNDARQVIEDLNVEVTVGADKGYDAHEFIEACLEIRVTPHVAQNTSGRRSAVPDAIA
SSAGYAVSQQKRKLIEQGFGWVKTVGRLRQAMVRGLKKVDQMFVLSMAAYNLVRMRSLGQIRPQLQ
Blast result :
Comments
ISRme16 is 95% aa similar to ISRme1.
References
1] ISfinder annotation (2009)
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina,T., Hammon,N., Israni,S., Pitluck,S., Goltsman,E., Martinez,M., Vergez,L., Larimer,F., Land,M., Lykidis,A. and Richardson,P. (2005) Direct submission GenBank.
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina,T., Hammon,N., Israni,S., Pitluck,S., Goltsman,E., Martinez,M., Vergez,L., Larimer,F., Land,M., Lykidis,A. and Richardson,P. (2005) Direct submission GenBank.