ISDde1
- Family IS5
- Group IS5
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_007519 | ND | Desulfovibrio desulfuricans | Desulfovibrio desulfuricans subsp. desulfuricans G20 |
DNA section
IS Length : 1479 bp
Ends
IR Length : 15/16
IRL : GTCAGCCCTGAAAAACAGGGCAACATCTCGAAATTAATTGAAATTTAATC
IRR : GTCAGTCCTGAAAAACTCTAAAAACGGCCTGTCAGGCGCAAGCCCGTACC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CCGGTGGACTCGTCGTGG | TAATTA | CCTTCTTCCTG | 6 |
DNA sequence
GTCAGCCCTGAAAAACAGGGCAACATCTCGAAATTAATTGAAATTTAATCGGAGATAATGTATTTCAAATAACCAGTAATGCAGTGAAAAATGCATTTTT
TCTTGTCGAAATCACTCCGAGGTTACCAACGATGCAGCCCAAAAAATCGGACCGTCAGCGCAGCTTCCTCTGCCCAGATCTGATCGATCAACTCGATCCT
CGAAACCACCTGTTGGGTCTGGCCAAGGCCATCCCGTGGCAGGTCTTTGAAGACAGCTTTCGTCCGCTTTATGCTACGTCCGGTCGCCCTGCCAAACCCG
TCCGGTTGATGGTCGGGCTTCTCATCCTCAAGCAGCTTGAAAACCTGAGCGATGAGCGCGTCGTCGAGATTTGGGTCCAGAACCCCTATTTCCAAGCCTT
TTGCGGCCAACAACGGTTCACCTGGAAGCTGCCGTGTGATCCGTCCGAGTTGACCTATTTTCGGCGTCGCATCGGGGAAGACGGGGTGCGCAAAATTTTT
GAAGTCTCCGTGACCCTCCATGGCGACAAGGCCAAGGAAGAGGAAGTGGTTGTGGATTCCACCGTGCAGGAAAAGAACATCACCTTTCCCACGGACGCCA
AGCTTCTGACCAAGATCGTGACGCGTTGCCGCATCCTGGCCAAACAGGAAGGCATCAAACTCCGGCGCAGCTACCAGCGTGAAGTCAAAAAACTGCTGAG
GATCATTCGCTTCAAATCAAAAGGCCGCGAACAAGGCGAGGCTCAGCGAGCGATCAAACGTTTGCGGACTATTGCCGGCGTCCTGATTCGCGAAATGAAG
CGGAAGCTTTCCCCTGAAGCACTTGAGGCCCACCAGCAGTCTCTGGACCTCTACGACCGCGTACAGCGCCAGCAGCGTTCCGATTCCAACAAAATTTACA
GCCTCCATGAGCCAGGCGTTTCCTGCATCAGCAAAGGCAAGGCCCACAAGAAGTACGAGTTCGGAGCCAAGGCATCTGTGACCGTGACCAAGACCAGTGG
CATCATCGTTGGCGCCTTGTCCTTCCACGACAACCCCTTCGATGGTCATACTCTCCCCGCCGTGCTGACCCAGGTTGAGAGCATCGTGGGCCAAAGACCA
ACCATGGCGATCTGCGACCGGGGATATCGCGGCAAGCGTCAAATCGGGGAGACCCGCATCGAAATTCCAGAATCAGGCAAAGGGCCAAAAACGGAATATG
AGAAGCGCAAAGCCAGAGAACGCTTTCGCCGCAGGGCCGCCATCGAGCCAATCATCGGACATCTTAAGAGTGATCACAGGATGATGCGAAACTACCTCAA
AGGGCGGATCGGCGATTCCGTGAACCTGTTCATGGCCTGCGCTGCATTCAATTTCCGGAAGTTCATCCGGTTGCTATATTTTTTGTGCCCCAAATTGCTG
TGGCACATTTTCCGACCCAATGTTCGGCCGGTACGGGCTTGCGCCTGACAGGCCGTTTTTAGAGTTTTTCAGGACTGAC
TCTTGTCGAAATCACTCCGAGGTTACCAACGATGCAGCCCAAAAAATCGGACCGTCAGCGCAGCTTCCTCTGCCCAGATCTGATCGATCAACTCGATCCT
CGAAACCACCTGTTGGGTCTGGCCAAGGCCATCCCGTGGCAGGTCTTTGAAGACAGCTTTCGTCCGCTTTATGCTACGTCCGGTCGCCCTGCCAAACCCG
TCCGGTTGATGGTCGGGCTTCTCATCCTCAAGCAGCTTGAAAACCTGAGCGATGAGCGCGTCGTCGAGATTTGGGTCCAGAACCCCTATTTCCAAGCCTT
TTGCGGCCAACAACGGTTCACCTGGAAGCTGCCGTGTGATCCGTCCGAGTTGACCTATTTTCGGCGTCGCATCGGGGAAGACGGGGTGCGCAAAATTTTT
GAAGTCTCCGTGACCCTCCATGGCGACAAGGCCAAGGAAGAGGAAGTGGTTGTGGATTCCACCGTGCAGGAAAAGAACATCACCTTTCCCACGGACGCCA
AGCTTCTGACCAAGATCGTGACGCGTTGCCGCATCCTGGCCAAACAGGAAGGCATCAAACTCCGGCGCAGCTACCAGCGTGAAGTCAAAAAACTGCTGAG
GATCATTCGCTTCAAATCAAAAGGCCGCGAACAAGGCGAGGCTCAGCGAGCGATCAAACGTTTGCGGACTATTGCCGGCGTCCTGATTCGCGAAATGAAG
CGGAAGCTTTCCCCTGAAGCACTTGAGGCCCACCAGCAGTCTCTGGACCTCTACGACCGCGTACAGCGCCAGCAGCGTTCCGATTCCAACAAAATTTACA
GCCTCCATGAGCCAGGCGTTTCCTGCATCAGCAAAGGCAAGGCCCACAAGAAGTACGAGTTCGGAGCCAAGGCATCTGTGACCGTGACCAAGACCAGTGG
CATCATCGTTGGCGCCTTGTCCTTCCACGACAACCCCTTCGATGGTCATACTCTCCCCGCCGTGCTGACCCAGGTTGAGAGCATCGTGGGCCAAAGACCA
ACCATGGCGATCTGCGACCGGGGATATCGCGGCAAGCGTCAAATCGGGGAGACCCGCATCGAAATTCCAGAATCAGGCAAAGGGCCAAAAACGGAATATG
AGAAGCGCAAAGCCAGAGAACGCTTTCGCCGCAGGGCCGCCATCGAGCCAATCATCGGACATCTTAAGAGTGATCACAGGATGATGCGAAACTACCTCAA
AGGGCGGATCGGCGATTCCGTGAACCTGTTCATGGCCTGCGCTGCATTCAATTTCCGGAAGTTCATCCGGTTGCTATATTTTTTGTGCCCCAAATTGCTG
TGGCACATTTTCCGACCCAATGTTCGGCCGGTACGGGCTTGCGCCTGACAGGCCGTTTTTAGAGTTTTTCAGGACTGAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1317 bp | 438 aa | 132 | 1448 | + | No |
Chemistry : DDE
ORF sequence :
MQPKKSDRQRSFLCPDLIDQLDPRNHLLGLAKAIPWQVFEDSFRPLYATSGRPAKPVRLMVGLLILKQLENLSDERVVEIWVQNPYFQAFCGQQRFTWKL
PCDPSELTYFRRRIGEDGVRKIFEVSVTLHGDKAKEEEVVVDSTVQEKNITFPTDAKLLTKIVTRCRILAKQEGIKLRRSYQREVKKLLRIIRFKSKGRE
QGEAQRAIKRLRTIAGVLIREMKRKLSPEALEAHQQSLDLYDRVQRQQRSDSNKIYSLHEPGVSCISKGKAHKKYEFGAKASVTVTKTSGIIVGALSFHD
NPFDGHTLPAVLTQVESIVGQRPTMAICDRGYRGKRQIGETRIEIPESGKGPKTEYEKRKARERFRRRAAIEPIIGHLKSDHRMMRNYLKGRIGDSVNLF
MACAAFNFRKFIRLLYFLCPKLLWHIFRPNVRPVRACA
PCDPSELTYFRRRIGEDGVRKIFEVSVTLHGDKAKEEEVVVDSTVQEKNITFPTDAKLLTKIVTRCRILAKQEGIKLRRSYQREVKKLLRIIRFKSKGRE
QGEAQRAIKRLRTIAGVLIREMKRKLSPEALEAHQQSLDLYDRVQRQQRSDSNKIYSLHEPGVSCISKGKAHKKYEFGAKASVTVTKTSGIIVGALSFHD
NPFDGHTLPAVLTQVESIVGQRPTMAICDRGYRGKRQIGETRIEIPESGKGPKTEYEKRKARERFRRRAAIEPIIGHLKSDHRMMRNYLKGRIGDSVNLF
MACAAFNFRKFIRLLYFLCPKLLWHIFRPNVRPVRACA
Blast result :
Comments
ISDde1 is 65% aa similar to ISPg7.
References
1] ISfinder annotation (2005)
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina,T., Hammon,N., Israni,S., Pitluck,S., Goodwin,L.A., Schmutz,J., Larimer,F., Land,M., Kyrpides,N., Ivanova,N. and Richardson,P. (2005) Direct submission GenBank.
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina,T., Hammon,N., Israni,S., Pitluck,S., Goodwin,L.A., Schmutz,J., Larimer,F., Land,M., Kyrpides,N., Ivanova,N. and Richardson,P. (2005) Direct submission GenBank.