ISDde1

  • Family IS5
  • Group IS5
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_007519 ND Desulfovibrio desulfuricans
Desulfovibrio desulfuricans subsp. desulfuricans G20
DNA section
IS Length : 1479 bp

Ends


IR Length : 15/16

IRL : GTCAGCCCTGAAAAACAGGGCAACATCTCGAAATTAATTGAAATTTAATC
IRR : GTCAGTCCTGAAAAACTCTAAAAACGGCCTGTCAGGCGCAAGCCCGTACC

Insertion site


Left flankDirect repeatRight flankDR Length
CCGGTGGACTCGTCGTGGTAATTACCTTCTTCCTG6

DNA sequence

GTCAGCCCTGAAAAACAGGGCAACATCTCGAAATTAATTGAAATTTAATCGGAGATAATGTATTTCAAATAACCAGTAATGCAGTGAAAAATGCATTTTT
TCTTGTCGAAATCACTCCGAGGTTACCAACGATGCAGCCCAAAAAATCGGACCGTCAGCGCAGCTTCCTCTGCCCAGATCTGATCGATCAACTCGATCCT
CGAAACCACCTGTTGGGTCTGGCCAAGGCCATCCCGTGGCAGGTCTTTGAAGACAGCTTTCGTCCGCTTTATGCTACGTCCGGTCGCCCTGCCAAACCCG
TCCGGTTGATGGTCGGGCTTCTCATCCTCAAGCAGCTTGAAAACCTGAGCGATGAGCGCGTCGTCGAGATTTGGGTCCAGAACCCCTATTTCCAAGCCTT
TTGCGGCCAACAACGGTTCACCTGGAAGCTGCCGTGTGATCCGTCCGAGTTGACCTATTTTCGGCGTCGCATCGGGGAAGACGGGGTGCGCAAAATTTTT
GAAGTCTCCGTGACCCTCCATGGCGACAAGGCCAAGGAAGAGGAAGTGGTTGTGGATTCCACCGTGCAGGAAAAGAACATCACCTTTCCCACGGACGCCA
AGCTTCTGACCAAGATCGTGACGCGTTGCCGCATCCTGGCCAAACAGGAAGGCATCAAACTCCGGCGCAGCTACCAGCGTGAAGTCAAAAAACTGCTGAG
GATCATTCGCTTCAAATCAAAAGGCCGCGAACAAGGCGAGGCTCAGCGAGCGATCAAACGTTTGCGGACTATTGCCGGCGTCCTGATTCGCGAAATGAAG
CGGAAGCTTTCCCCTGAAGCACTTGAGGCCCACCAGCAGTCTCTGGACCTCTACGACCGCGTACAGCGCCAGCAGCGTTCCGATTCCAACAAAATTTACA
GCCTCCATGAGCCAGGCGTTTCCTGCATCAGCAAAGGCAAGGCCCACAAGAAGTACGAGTTCGGAGCCAAGGCATCTGTGACCGTGACCAAGACCAGTGG
CATCATCGTTGGCGCCTTGTCCTTCCACGACAACCCCTTCGATGGTCATACTCTCCCCGCCGTGCTGACCCAGGTTGAGAGCATCGTGGGCCAAAGACCA
ACCATGGCGATCTGCGACCGGGGATATCGCGGCAAGCGTCAAATCGGGGAGACCCGCATCGAAATTCCAGAATCAGGCAAAGGGCCAAAAACGGAATATG
AGAAGCGCAAAGCCAGAGAACGCTTTCGCCGCAGGGCCGCCATCGAGCCAATCATCGGACATCTTAAGAGTGATCACAGGATGATGCGAAACTACCTCAA
AGGGCGGATCGGCGATTCCGTGAACCTGTTCATGGCCTGCGCTGCATTCAATTTCCGGAAGTTCATCCGGTTGCTATATTTTTTGTGCCCCAAATTGCTG
TGGCACATTTTCCGACCCAATGTTCGGCCGGTACGGGCTTGCGCCTGACAGGCCGTTTTTAGAGTTTTTCAGGACTGAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1317 bp438 aa1321448+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MQPKKSDRQRSFLCPDLIDQLDPRNHLLGLAKAIPWQVFEDSFRPLYATSGRPAKPVRLMVGLLILKQLENLSDERVVEIWVQNPYFQAFCGQQRFTWKL
PCDPSELTYFRRRIGEDGVRKIFEVSVTLHGDKAKEEEVVVDSTVQEKNITFPTDAKLLTKIVTRCRILAKQEGIKLRRSYQREVKKLLRIIRFKSKGRE
QGEAQRAIKRLRTIAGVLIREMKRKLSPEALEAHQQSLDLYDRVQRQQRSDSNKIYSLHEPGVSCISKGKAHKKYEFGAKASVTVTKTSGIIVGALSFHD
NPFDGHTLPAVLTQVESIVGQRPTMAICDRGYRGKRQIGETRIEIPESGKGPKTEYEKRKARERFRRRAAIEPIIGHLKSDHRMMRNYLKGRIGDSVNLF
MACAAFNFRKFIRLLYFLCPKLLWHIFRPNVRPVRACA

 

Blast result :
Comments
ISDde1 is 65% aa similar to ISPg7.
References
1] ISfinder annotation (2005)
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina,T., Hammon,N., Israni,S., Pitluck,S., Goodwin,L.A., Schmutz,J., Larimer,F., Land,M., Kyrpides,N., Ivanova,N. and Richardson,P. (2005) Direct submission GenBank.