ISBrsp2

  • Family IS1182
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CU234118 ND Bradyrhizobium sp.
Bradyrhizobium sp. ORS278
DNA section
IS Length : 1547 bp

Ends


IR Length : 13/20

IRL : GAGGCTGTGAATCTTTCGATGCCTATTCTCGCTGACTATGATTCTCTGAG
IRR : GAGCTTGTGAGCCAATTTGAGTTCAGGGCTGAGTTTGCGACGAGGGGGCT

Insertion site


Left flankDirect repeatRight flankDR Length
CCTGCGCATTTGCCCACCCTACCGCTCTGGTCGAGCGC3

DNA sequence

GAGGCTGTGAATCTTTCGATGCCTATTCTCGCTGACTATGATTCTCTGAGCGGAGCGGTTTGCTGGAGGTCATGATGGCTAAGGACGAGCTTTTCGATGG
ATTGCCGGAGCAGTCGGGTCCCAAAGCGCGGGAGCTTCCGAAGGGTGCGCCTCGTCTGCGGGTTCCGGAGCGCAACCAGGTCGAGCTGCGCGCGGTCGAT
ATCGACAGCCTGATCGGGCAGGATCATCCGGCGCGGATGATCTGGACCTATGTCGAGACGCTCGACCTGAGCGAGTTGGAAGACCGAGTGAAGGCGCGGG
AGAACAGGCCTGGTCATCCGGCACCGTCGCCACGCCTTTTGCTGGCGCTCTGGCTCTATGCCACCAGCGACGGCGTCGGCAGTGCTCGGGCGCTGGATCG
CCTGTGCGAGAGCCATGATGCCTATCGCTGGCTGTGTGGCGGGGTATCGCTGAACTATCACACGCTATCGGACTTCCGCGTCGGCTGTGCCGATGTGCTC
GACCGCCTGATGAGCGAACATCTGGCGGCGTTGAGCGAGGCCGGGCTGGTCGATCTCGATACGCTGGCACAGGACGGGGTGCGGATCCGCGCCAATGCGG
GGGCCAGCTCGTTCCGGCGCGAAGCGAGGCTGCAGCAGAAGCTGGCGGAAGCAACGGAGGTGGTGGAAGAGCTCAAGCGGGAAGTCGATGCAGATCCAGA
AGCCAGCAACCGGCGCATCCGCGCGGCGCGTGAGCGCGCCGCACGCGAGCATAAACAGAAGGTCGAAGCGGCGCAGGCGGCGCTGGAGGAGATCAAGCGC
AAGCGCCAGAAGCTCGAGGAAAAAGGCGGTAACGGCAAGAAGCCGAAGGAGCCTCGGGCCTCCACCACCGATCCGCAGGCGCGGCGGATGAAGATGGCCG
ATGCCGGCTTCCGTCCCGCCTACAACGTGCAGGTCGTCAGCGCTGCAGCTGCGATGATCGTGGTCGCAATCGACATCGACAACAACGGATCAGACGGCGG
CCTGATGCGACCGATGCTGGAGCGGCTGCGCGACAAGCTGCAACGCCTGCCCAGGCGCTACCTCGTCGATGGCGGATACTGCCGTGGCGACGACATCGAA
TGGGCGCATGGCCAGAACATCGAGATCTACTGTCCGCCGCGCTCGCAAAAAAGCGGTGTTGATCCTTATCTGCCCCGAGATACCGATGGCCCTGGTGTGG
CGGCCTGGCGAGCGCGCATGGCGAGCGAAGCCGGCAAGGCTCAGTATCAGCTCCGCTCGCTATGCGAATGCATCCACGCCCGCTGGCGCAACTGGGACCT
CCGGCAAGTGACGGTACGCGGCATCGACAAGGTTCGCGCCGTCGTGAGCTGGTACGCGTTCACCAACAACCTTCTGCAAGGATTGCACCTCATCGCCTGT
CAAAAAGCAGCATCATAGTCGCCGGGAGCGGCATCCGAGGGATCCTCCGGGACAATCCGCCGCACAGAGCCGCCCACAACGGCTATCCCGCGGCGACAGC
CCCCTCGTCGCAAACTCAGCCCTGAACTCAAATTGGCTCACAAGCTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1347 bp448 aa721418+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MMAKDELFDGLPEQSGPKARELPKGAPRLRVPERNQVELRAVDIDSLIGQDHPARMIWTYVETLDLSELEDRVKARENRPGHPAPSPRLLLALWLYATSD
GVGSARALDRLCESHDAYRWLCGGVSLNYHTLSDFRVGCADVLDRLMSEHLAALSEAGLVDLDTLAQDGVRIRANAGASSFRREARLQQKLAEATEVVEE
LKREVDADPEASNRRIRAARERAAREHKQKVEAAQAALEEIKRKRQKLEEKGGNGKKPKEPRASTTDPQARRMKMADAGFRPAYNVQVVSAAAAMIVVAI
DIDNNGSDGGLMRPMLERLRDKLQRLPRRYLVDGGYCRGDDIEWAHGQNIEIYCPPRSQKSGVDPYLPRDTDGPGVAAWRARMASEAGKAQYQLRSLCEC
IHARWRNWDLRQVTVRGIDKVRAVVSWYAFTNNLLQGLHLIACQKAAS

 

Blast result :
Comments
ISBrsp2 is 64% aa simialr to ISAnsp1.
References
1] ISfinder annotation (2009)
2] Giraud,E., Moulin,L., Vallenet,D., Barbe,V., Cytryn,E., Avarre,J.C., Jaubert,M., Simon,D., Cartieaux,F., Prin,Y., Bena,G., Hannibal,L., Fardoux,J., Kojadinovic,M., Vuillet,L., Lajus,A., Cruveiller,S., Rouy,Z., Mangenot,S., Segurens,B., Dossat,C., Franck,W.L., Chang,W.S., Saunders,E., Bruce,D., Richardson,P., Normand,P., Dreyfus,B., Pignol,D., Stacey,G., Emerich,D., Vermeglio,A., Medigue,C. and Sadowsky,M. (2007) Science 316 (5829), 1307-1312