ISBuce1
- Family IS1182
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_AAEH01000012 | ND | Burkholderia cepacia | Burkholderia cepacia R1808 |
DNA section
IS Length : 1339 bp
Ends
IR Length : 16
IRL : CAGGCTGCTGAAAAACTGGCCGACGGAGACGGTCGAGCAACGGGTAGCAA
IRR : CAGGCTGCTGAAAAACCACCCCGATCGCGGATCTTCTGCACACGATTCGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TCCTTTGCTC | TTAG | TGGCAAAGAGCAA | 4 |
DNA sequence
CAGGCTGCTGAAAAACTGGCCGACGGAGACGGTCGAGCAACGGGTAGCAAGGACAATTTGAGCACCCGATCTGACTGAGAACGATGCGAGGCACCGACAC
CTTCACCGAGAGCCTGTTCACCATGCGCAAGCTGGAGGACTTCGTGCCGGCACGGCACCCGCTGCGCGAGATTCGCAAGACGGCCAATGCGGCGCTGGAC
AAGCTGGGGCCAACGCTGACGGGGATGTATGCAGCCGAGGTCAAGGGCGGACGGCCGAGCATCGCGCCGGAGAAGCTGCTGCGCGCCATGCTGCTGCAGG
TGCTGTTCAGCGTGCGATCTGAGCGGCAGCTGATGGAGCAGGTGCACTACAACCTGCTGTTCCGCTGGTTCATCGGGCTGTCGATGGACGACGCCGTGTG
GGTGCCAACGGTATTCACCAAGAACCGCGAGCGCCTGATCAAGCATGACGCGGTCATCAAGTTCTTCAACGAGGTGGTGGACATTGCGCACAAGCGCGAC
CTGTTGTCGGGCGAGCATTTCAGCGTGGACGGCACGCTGATCCAGGCCTGGGCCGGGCACAAGAGCTTCGTACCCAAGGACGACAAGCCCGACGCAGACG
GTGGTGGTGCCCCGGCCGGCGACTTCAAAGGCCAGCGACGCAGCAACGACACCCACGAATCGAAGAGCGACGGCGATGCACGGCTGTACCGCAAGGGCAA
CACCGCCAGCGAGCTGCGCTACATGGGCCACACCCTGAGCGACAACCGCCATGGGTTGATCGCCAGTGCCATGGTGACCCAGGCCGACGGCTTTGCCGAA
CGCGAAGCGGCCAAGGCCATGATCAGCGATGCGCGCCAAGCGCTGGGTGACGACGAGCGCGAGATCACGCTGGGCGCTGACAAGGGCTACGACGCCAAGG
AGTTCATCGACGCCTGCATGTCGATGAAGGTCACCCCGCATGTGGCGCAGAACACGTCGGGCCGCAAGTCGGCGGTGCCCGACGAGATCGCGCAGACGCA
GGGCTATGCGACCTCGCAACGCAAGCGCAAGCTCATCGAGCAGGGCTTCGGCTGGGCCAAGACAGTGGGCGGCATCCGCCAGGTGATGGTGCGCGGCCTT
GAGCGTGTGGACCAGATGTTCGTGCTGACCATGGCCGCCTACAACTTGGTGCGCATGCGCAGCCTGGGACAAGTCCGTCTGCAGGCTGCCCAGTGACCAG
AAACCGACCTGAAAGCGCATGAAAGTCGCTCCAAACCGATGAACTTCATGCTCAACATCCCGCATCGCGAAAAGCTCAGTGCCCCGACCTCGAATCGTGT
GCAGAAGATCCGCGATCGGGGTGGTTTTTCAGCAGCCTG
CTTCACCGAGAGCCTGTTCACCATGCGCAAGCTGGAGGACTTCGTGCCGGCACGGCACCCGCTGCGCGAGATTCGCAAGACGGCCAATGCGGCGCTGGAC
AAGCTGGGGCCAACGCTGACGGGGATGTATGCAGCCGAGGTCAAGGGCGGACGGCCGAGCATCGCGCCGGAGAAGCTGCTGCGCGCCATGCTGCTGCAGG
TGCTGTTCAGCGTGCGATCTGAGCGGCAGCTGATGGAGCAGGTGCACTACAACCTGCTGTTCCGCTGGTTCATCGGGCTGTCGATGGACGACGCCGTGTG
GGTGCCAACGGTATTCACCAAGAACCGCGAGCGCCTGATCAAGCATGACGCGGTCATCAAGTTCTTCAACGAGGTGGTGGACATTGCGCACAAGCGCGAC
CTGTTGTCGGGCGAGCATTTCAGCGTGGACGGCACGCTGATCCAGGCCTGGGCCGGGCACAAGAGCTTCGTACCCAAGGACGACAAGCCCGACGCAGACG
GTGGTGGTGCCCCGGCCGGCGACTTCAAAGGCCAGCGACGCAGCAACGACACCCACGAATCGAAGAGCGACGGCGATGCACGGCTGTACCGCAAGGGCAA
CACCGCCAGCGAGCTGCGCTACATGGGCCACACCCTGAGCGACAACCGCCATGGGTTGATCGCCAGTGCCATGGTGACCCAGGCCGACGGCTTTGCCGAA
CGCGAAGCGGCCAAGGCCATGATCAGCGATGCGCGCCAAGCGCTGGGTGACGACGAGCGCGAGATCACGCTGGGCGCTGACAAGGGCTACGACGCCAAGG
AGTTCATCGACGCCTGCATGTCGATGAAGGTCACCCCGCATGTGGCGCAGAACACGTCGGGCCGCAAGTCGGCGGTGCCCGACGAGATCGCGCAGACGCA
GGGCTATGCGACCTCGCAACGCAAGCGCAAGCTCATCGAGCAGGGCTTCGGCTGGGCCAAGACAGTGGGCGGCATCCGCCAGGTGATGGTGCGCGGCCTT
GAGCGTGTGGACCAGATGTTCGTGCTGACCATGGCCGCCTACAACTTGGTGCGCATGCGCAGCCTGGGACAAGTCCGTCTGCAGGCTGCCCAGTGACCAG
AAACCGACCTGAAAGCGCATGAAAGTCGCTCCAAACCGATGAACTTCATGCTCAACATCCCGCATCGCGAAAAGCTCAGTGCCCCGACCTCGAATCGTGT
GCAGAAGATCCGCGATCGGGGTGGTTTTTCAGCAGCCTG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1113 bp | 370 aa | 84 | 1196 | + | No |
Chemistry : DDE
ORF sequence :
MRGTDTFTESLFTMRKLEDFVPARHPLREIRKTANAALDKLGPTLTGMYAAEVKGGRPSIAPEKLLRAMLLQVLFSVRSERQLMEQVHYNLLFRWFIGLS
MDDAVWVPTVFTKNRERLIKHDAVIKFFNEVVDIAHKRDLLSGEHFSVDGTLIQAWAGHKSFVPKDDKPDADGGGAPAGDFKGQRRSNDTHESKSDGDAR
LYRKGNTASELRYMGHTLSDNRHGLIASAMVTQADGFAEREAAKAMISDARQALGDDEREITLGADKGYDAKEFIDACMSMKVTPHVAQNTSGRKSAVPD
EIAQTQGYATSQRKRKLIEQGFGWAKTVGGIRQVMVRGLERVDQMFVLTMAAYNLVRMRSLGQVRLQAAQ
MDDAVWVPTVFTKNRERLIKHDAVIKFFNEVVDIAHKRDLLSGEHFSVDGTLIQAWAGHKSFVPKDDKPDADGGGAPAGDFKGQRRSNDTHESKSDGDAR
LYRKGNTASELRYMGHTLSDNRHGLIASAMVTQADGFAEREAAKAMISDARQALGDDEREITLGADKGYDAKEFIDACMSMKVTPHVAQNTSGRKSAVPD
EIAQTQGYATSQRKRKLIEQGFGWAKTVGGIRQVMVRGLERVDQMFVLTMAAYNLVRMRSLGQVRLQAAQ
Blast result :
Comments
ISBuce1 is 72% aa similar to ISThsp18.
References
1] ISfinder annotation (2008)
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,C., Glavina,T., Hammon,N., Israni,S., Pitluck,S. and Richardson,P. (2004) Direct submission GenBank.
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,C., Glavina,T., Hammon,N., Israni,S., Pitluck,S. and Richardson,P. (2004) Direct submission GenBank.