ISBuce1

  • Family IS1182
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_AAEH01000012 ND Burkholderia cepacia
Burkholderia cepacia R1808
DNA section
IS Length : 1339 bp

Ends


IR Length : 16

IRL : CAGGCTGCTGAAAAACTGGCCGACGGAGACGGTCGAGCAACGGGTAGCAA
IRR : CAGGCTGCTGAAAAACCACCCCGATCGCGGATCTTCTGCACACGATTCGA

Insertion site


Left flankDirect repeatRight flankDR Length
TCCTTTGCTCTTAGTGGCAAAGAGCAA4

DNA sequence

CAGGCTGCTGAAAAACTGGCCGACGGAGACGGTCGAGCAACGGGTAGCAAGGACAATTTGAGCACCCGATCTGACTGAGAACGATGCGAGGCACCGACAC
CTTCACCGAGAGCCTGTTCACCATGCGCAAGCTGGAGGACTTCGTGCCGGCACGGCACCCGCTGCGCGAGATTCGCAAGACGGCCAATGCGGCGCTGGAC
AAGCTGGGGCCAACGCTGACGGGGATGTATGCAGCCGAGGTCAAGGGCGGACGGCCGAGCATCGCGCCGGAGAAGCTGCTGCGCGCCATGCTGCTGCAGG
TGCTGTTCAGCGTGCGATCTGAGCGGCAGCTGATGGAGCAGGTGCACTACAACCTGCTGTTCCGCTGGTTCATCGGGCTGTCGATGGACGACGCCGTGTG
GGTGCCAACGGTATTCACCAAGAACCGCGAGCGCCTGATCAAGCATGACGCGGTCATCAAGTTCTTCAACGAGGTGGTGGACATTGCGCACAAGCGCGAC
CTGTTGTCGGGCGAGCATTTCAGCGTGGACGGCACGCTGATCCAGGCCTGGGCCGGGCACAAGAGCTTCGTACCCAAGGACGACAAGCCCGACGCAGACG
GTGGTGGTGCCCCGGCCGGCGACTTCAAAGGCCAGCGACGCAGCAACGACACCCACGAATCGAAGAGCGACGGCGATGCACGGCTGTACCGCAAGGGCAA
CACCGCCAGCGAGCTGCGCTACATGGGCCACACCCTGAGCGACAACCGCCATGGGTTGATCGCCAGTGCCATGGTGACCCAGGCCGACGGCTTTGCCGAA
CGCGAAGCGGCCAAGGCCATGATCAGCGATGCGCGCCAAGCGCTGGGTGACGACGAGCGCGAGATCACGCTGGGCGCTGACAAGGGCTACGACGCCAAGG
AGTTCATCGACGCCTGCATGTCGATGAAGGTCACCCCGCATGTGGCGCAGAACACGTCGGGCCGCAAGTCGGCGGTGCCCGACGAGATCGCGCAGACGCA
GGGCTATGCGACCTCGCAACGCAAGCGCAAGCTCATCGAGCAGGGCTTCGGCTGGGCCAAGACAGTGGGCGGCATCCGCCAGGTGATGGTGCGCGGCCTT
GAGCGTGTGGACCAGATGTTCGTGCTGACCATGGCCGCCTACAACTTGGTGCGCATGCGCAGCCTGGGACAAGTCCGTCTGCAGGCTGCCCAGTGACCAG
AAACCGACCTGAAAGCGCATGAAAGTCGCTCCAAACCGATGAACTTCATGCTCAACATCCCGCATCGCGAAAAGCTCAGTGCCCCGACCTCGAATCGTGT
GCAGAAGATCCGCGATCGGGGTGGTTTTTCAGCAGCCTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1113 bp370 aa841196+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MRGTDTFTESLFTMRKLEDFVPARHPLREIRKTANAALDKLGPTLTGMYAAEVKGGRPSIAPEKLLRAMLLQVLFSVRSERQLMEQVHYNLLFRWFIGLS
MDDAVWVPTVFTKNRERLIKHDAVIKFFNEVVDIAHKRDLLSGEHFSVDGTLIQAWAGHKSFVPKDDKPDADGGGAPAGDFKGQRRSNDTHESKSDGDAR
LYRKGNTASELRYMGHTLSDNRHGLIASAMVTQADGFAEREAAKAMISDARQALGDDEREITLGADKGYDAKEFIDACMSMKVTPHVAQNTSGRKSAVPD
EIAQTQGYATSQRKRKLIEQGFGWAKTVGGIRQVMVRGLERVDQMFVLTMAAYNLVRMRSLGQVRLQAAQ

 

Blast result :
Comments
ISBuce1 is 72% aa similar to ISThsp18.
References
1] ISfinder annotation (2008)
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,C., Glavina,T., Hammon,N., Israni,S., Pitluck,S. and Richardson,P. (2004) Direct submission GenBank.