ISClbu1

  • Family IS1182
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_ABDT01000006 ND Clostridium butyricum
Clostridium butyricum 5521
DNA section
IS Length : 1830 bp

Ends


IR Length : 14

IRL : GGGGCTGTATCAAAACAAGTTTGATACTAGCCGATAAAAAAAAGAGAATT
IRR : GGGGCTGTATCAAATTGAAATTTTTTAAATTCAATTTGATACAGCCTATT

Insertion site


Left flankDirect repeatRight flankDR Length
TTCAAAAAAAGATGATCTTTTCACATATATT0

DNA sequence

GGGGCTGTATCAAAACAAGTTTGATACTAGCCGATAAAAAAAAGAGAATTCATAAATTTGAATTCTCTTTTTTGCGCATAATATTAATATGAACACTAAT
AATATTATACCTATGCATCAAATAGGTTTCCCAATAAATCTAGAAAATATTATATCTGATAGTGATTCAGTAAGAGTGCTTTATGATGTTATGGAGGGAT
TAGATTATTCAGAATTAAATAGAACTTACTCTACTATTGGTAGAAATCCAGCACTTTTACCTAAAACTATGTTTGCAATTATAGTTTATGGATATATGGA
AGGAATATATTCAAGTCGTGCTCTTGAAAAGGCATGCAAAAGAGATATAAATTTCAAATGGCTTTTACAAGGTCAACTACCACCAGGACACAATTCTATA
GATAGATTTAGACGTGAACGATTAGCTGGTTGTATAGAAAATTTATTTAATCAACTTGTGAAAAAACTTAGAGAACTTAATGAAATTCAATTTAAAAATA
TATTCATTGACGGAACAAAAATAGAATCAGCTGCAAATCGATATACTTTTGTTTGGAAAAAATCTATTGATAAATTTGAAGATAGACTACAAAAGAAAAT
AAAAGAAAGCTTAATAAGAATGAATCATGATTTGAATTTATGTCTTATTATTACTAATGCTAAAATATCAGTTCAAGATGCTAATTATATTTTGGATAGT
ATCAGAATTATGATTGAAGCCAATAATATTGAATTTGTTTATGGAAAAGGTAAAAGAAAAAGTAAATTCCAAAGATATACTGAACAACTTAAGGAATTTA
TTGAAAAGCAAAATAAATATAATGAATACAATAGCATTTTTAATGGACGAAACAGTTTTTCAAAAACAGATCATGACGCAACTTTCATGCATATGAAAGA
AGATCACATGAAAAACGGTCAATTAAAACCAGCATATAATATCCAAATAGGGGTAGAGGGTGAATATATTGTAGGAGTAGACATTTCAAGTGAAAGATCT
GACCAGCTTACTTTTATACCATTTTTAGATAGATTAGAAAAGAATTTAAATCAAAAATATGAATCCGTAACTGCTGATGCAGGATACGAAAGTGAAGAAA
ATTATGCATATCTTGAATCTAAGAAACAAGAAGCTTTTATTAAACCTGCAAATTATGAAAAGTCAAAGACAAAGAAATTCAAGAGTGATATTAGTAAGAA
AGAAAATATGTACTATAACACAGATGAAGATTACTACATTTGTGCATCCGGTAAAAAAATGCTTCTAAAAGGAACAAAAAAGAAAAAAACAAAATCTGGA
TATGAAACTACTGTTAGCATCTATGAATGTGAAGATTGTGATGGCTGTGAATATAAGAGTAAATGTACGAAAGCAAAAGGTAATAAACAAATACATGTGG
CTAAAAATTTTATGCGTCTAAGAACAAATTCACTTAAAAACATCACTACACCTAAAGGAATACTTTTAAGAATGAACAGATCAATTCAAGTCGAAGGAGC
ATTTGGAGTTATTAAACAAGATTATGGTTTTAGAAGATTTTTTATGCGTGGAAATATTAAAGTTCGTACTGAATTTTTGTTAATGGCGTTTGGTTATAAT
GTTAATAAATTGTACCATAAAACCATTCAAAATCGTAACGGTGAGCTGCTTCATAAGCAGCAAGCTTCGTAATTTTAAATATATAGTTAAAATATGGATA
ATAATATTTATCCTTTATTTGTGTTATTTCAAAATAAAATATTTGGAAATATATACATGAATAAAATTTACGTTTATAAAAATAGGCTGTATCAAATTGA
ATTTAAAAAATTTCAATTTGATACAGCCCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1584 bp527 aa891672+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MNTNNIIPMHQIGFPINLENIISDSDSVRVLYDVMEGLDYSELNRTYSTIGRNPALLPKTMFAIIVYGYMEGIYSSRALEKACKRDINFKWLLQGQLPPG
HNSIDRFRRERLAGCIENLFNQLVKKLRELNEIQFKNIFIDGTKIESAANRYTFVWKKSIDKFEDRLQKKIKESLIRMNHDLNLCLIITNAKISVQDANY
ILDSIRIMIEANNIEFVYGKGKRKSKFQRYTEQLKEFIEKQNKYNEYNSIFNGRNSFSKTDHDATFMHMKEDHMKNGQLKPAYNIQIGVEGEYIVGVDIS
SERSDQLTFIPFLDRLEKNLNQKYESVTADAGYESEENYAYLESKKQEAFIKPANYEKSKTKKFKSDISKKENMYYNTDEDYYICASGKKMLLKGTKKKK
TKSGYETTVSIYECEDCDGCEYKSKCTKAKGNKQIHVAKNFMRLRTNSLKNITTPKGILLRMNRSIQVEGAFGVIKQDYGFRRFFMRGNIKVRTEFLLMA
FGYNVNKLYHKTIQNRNGELLHKQQAS

 

Blast result :
Comments
ISClbu1 is 52% aa similar to IS660.
References
1] ISfinder annotation (2008)
2] Paulsen,I. (2007) Direct submission GenBank.