ISShsp2

  • Family IS1182
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AB095953 ND Sphingomonas sp.
Sphingomonas sp. KA1
DNA section
IS Length : 1526 bp

Ends


IR Length : 18/19

IRL : GATGCCGTTGAAAAAGTCGGTCTTGCAGTCGGGGTGACGGTCTGATTCAG
IRR : GATACCGTTGAAAAAGTCGCCTTCTCGGCGAAGCGGAGGGTACGGATCGA

Insertion site


Left flankDirect repeatRight flankDR Length
ATGAACGGCAGATTTGTCCCCATTTTTGCCATTCG4

DNA sequence

GATGCCGTTGAAAAAGTCGGTCTTGCAGTCGGGGTGACGGTCTGATTCAGCATCAGCATGCTGAAGGACGCCAAGCGATGATGGGCGAGCGCCGAGTGGC
GCAGGAGGCCTTGTTCTACGAATTCAGTCTGGATCGACACGTTCCGGCAGATCATCTGCTACGGGCAATCGACCGGTTCGTGGACCTGTCGGGGATGCGC
GAGCACCTGCGCGGCTTTTACAGCGCGATTGGTCGCCCTTCGATCGACCCTGAGCTGATGCTGCGGATGCTGATCGTGGGGTACTGCTTCGGCATCAGGT
CGGAGCGCCGCCTGTGCGAAGAGGTGCACCTCAACCTAGCTTACCGCTGGTTCTGCCGCCTGGGTCTCGACGGCGACGTGCCGGATCACTCGACCTTCTC
GAAGAACCGGCATGGGCGCTTCCGTGAGAGTGATCTGTTCCGCCAGTTGTTTGAAGCCACCGTGCGGCGCTGCATTGAGGAAGGACTGGTCGGCGGCGAC
GGCTTCGCTGTCGATGCCAGCCTGATCCGCGCCGAGGCCAACCGGCAGACCTATGTCGAGGGAACGCAGGGGCTTGGCGCTGTTCGGGCAGGGCGTGCCG
TCGAGGAGTATCTCGCCGTACTCGACGATGCCGTTTTCGGCGGCGCAACGCCGGTTGATCCCAAACGCGTTTCGCCTGTCGATCCTGCGGCCCGCTATAC
CCAGGCGCACGGCAACCGCGCCGACTTCTGCTACGCCACCAACTACCTGATCGACGTCGACAATGCGGTGATCGTTGATGTCGAGGCGAGCACGGCGGTG
CGCCAGGCCGAGGTGACCGCCGCCAAACGGATGATCGAGCGGGCAGCCGATTGCCATGGTCTATGGCCCCGCAAGCTGATCGGCGACACCGGCTATGGCT
CTGCGGGCATGCTCGCCTGGCTCGTCCACGAGCGTGGCATCGAGCCGCATGTGCCCGTCTTCGACAAGTCCGCCAGGAGCGATGGCGCTTTCGAGCGCAG
CGACTTCACCTTCGATCACAAGGATGACAGCTATATCTGCCCGGCCGGCAAGCGTCTGCGACCGCGTAACCGCAATTTCACCTCGCCGCGACCGGAGGCC
GACCAGGACGGCTTCATCCGCTACCGAGCGCGGCAGCAGGACTGCAGCAACTGCGCGCTCAAGCCACAATGCACACCCATCCTGCCGGCTCGCAAGGTGA
CCCGCTCCATCCACGAGGGCGCTCGCGATCTCGCTCGGGCCCTGTCGCAGGAAGATGAATGGATCGCCTCACGCCGCGAGCGCAAGAAGGTCGAGATGCT
GTTTGCCCACCTGAAGCGCATCATGCGGCTCGACCGGCTGCGATTACGCGGACCCAATGGTGCCCAGGATGAGTTCCACCTCGCCGCTGCCGCCCAGAAC
CTGCGCAAGCTCGCCAAGATCAGCATCGCCAGGCAGATGGCGATGACATGAGGTCAGGCGACTCTGCTCAGCCGTTTCGATCCGTACCCTCCGCTTCGCC
GAGAAGGCGACTTTTTCAACGGTATC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1374 bp457 aa781451+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MMGERRVAQEALFYEFSLDRHVPADHLLRAIDRFVDLSGMREHLRGFYSAIGRPSIDPELMLRMLIVGYCFGIRSERRLCEEVHLNLAYRWFCRLGLDGD
VPDHSTFSKNRHGRFRESDLFRQLFEATVRRCIEEGLVGGDGFAVDASLIRAEANRQTYVEGTQGLGAVRAGRAVEEYLAVLDDAVFGGATPVDPKRVSP
VDPAARYTQAHGNRADFCYATNYLIDVDNAVIVDVEASTAVRQAEVTAAKRMIERAADCHGLWPRKLIGDTGYGSAGMLAWLVHERGIEPHVPVFDKSAR
SDGAFERSDFTFDHKDDSYICPAGKRLRPRNRNFTSPRPEADQDGFIRYRARQQDCSNCALKPQCTPILPARKVTRSIHEGARDLARALSQEDEWIASRR
ERKKVEMLFAHLKRIMRLDRLRLRGPNGAQDEFHLAAAAQNLRKLAKISIARQMAMT

 

Blast result :
Comments
ISShsp2 is 49% aa similar to ISBma2.
This sequence was renamed because it used a name (ISShsp1) already attributed to another sequence.
References
1] ISfinder annotation (2005)
2] Inoue,K., Widada,J., Nakai,S., Endoh,T., Urata,M., Ashikawa,Y., Shintani,M., Saiki,Y., Yoshida,T., Habe,H., Omori,T. and Nojiri,H.(2004) Biosci. Biotechnol. Biochem. 68 (7), 1467-1480