ISShsp2
- Family IS1182
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AB095953 | ND | Sphingomonas sp. | Sphingomonas sp. KA1 |
DNA section
IS Length : 1526 bp
Ends
IR Length : 18/19
IRL : GATGCCGTTGAAAAAGTCGGTCTTGCAGTCGGGGTGACGGTCTGATTCAG
IRR : GATACCGTTGAAAAAGTCGCCTTCTCGGCGAAGCGGAGGGTACGGATCGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ATGAACGGCAGATTTG | TCCC | CATTTTTGCCATTCG | 4 |
DNA sequence
GATGCCGTTGAAAAAGTCGGTCTTGCAGTCGGGGTGACGGTCTGATTCAGCATCAGCATGCTGAAGGACGCCAAGCGATGATGGGCGAGCGCCGAGTGGC
GCAGGAGGCCTTGTTCTACGAATTCAGTCTGGATCGACACGTTCCGGCAGATCATCTGCTACGGGCAATCGACCGGTTCGTGGACCTGTCGGGGATGCGC
GAGCACCTGCGCGGCTTTTACAGCGCGATTGGTCGCCCTTCGATCGACCCTGAGCTGATGCTGCGGATGCTGATCGTGGGGTACTGCTTCGGCATCAGGT
CGGAGCGCCGCCTGTGCGAAGAGGTGCACCTCAACCTAGCTTACCGCTGGTTCTGCCGCCTGGGTCTCGACGGCGACGTGCCGGATCACTCGACCTTCTC
GAAGAACCGGCATGGGCGCTTCCGTGAGAGTGATCTGTTCCGCCAGTTGTTTGAAGCCACCGTGCGGCGCTGCATTGAGGAAGGACTGGTCGGCGGCGAC
GGCTTCGCTGTCGATGCCAGCCTGATCCGCGCCGAGGCCAACCGGCAGACCTATGTCGAGGGAACGCAGGGGCTTGGCGCTGTTCGGGCAGGGCGTGCCG
TCGAGGAGTATCTCGCCGTACTCGACGATGCCGTTTTCGGCGGCGCAACGCCGGTTGATCCCAAACGCGTTTCGCCTGTCGATCCTGCGGCCCGCTATAC
CCAGGCGCACGGCAACCGCGCCGACTTCTGCTACGCCACCAACTACCTGATCGACGTCGACAATGCGGTGATCGTTGATGTCGAGGCGAGCACGGCGGTG
CGCCAGGCCGAGGTGACCGCCGCCAAACGGATGATCGAGCGGGCAGCCGATTGCCATGGTCTATGGCCCCGCAAGCTGATCGGCGACACCGGCTATGGCT
CTGCGGGCATGCTCGCCTGGCTCGTCCACGAGCGTGGCATCGAGCCGCATGTGCCCGTCTTCGACAAGTCCGCCAGGAGCGATGGCGCTTTCGAGCGCAG
CGACTTCACCTTCGATCACAAGGATGACAGCTATATCTGCCCGGCCGGCAAGCGTCTGCGACCGCGTAACCGCAATTTCACCTCGCCGCGACCGGAGGCC
GACCAGGACGGCTTCATCCGCTACCGAGCGCGGCAGCAGGACTGCAGCAACTGCGCGCTCAAGCCACAATGCACACCCATCCTGCCGGCTCGCAAGGTGA
CCCGCTCCATCCACGAGGGCGCTCGCGATCTCGCTCGGGCCCTGTCGCAGGAAGATGAATGGATCGCCTCACGCCGCGAGCGCAAGAAGGTCGAGATGCT
GTTTGCCCACCTGAAGCGCATCATGCGGCTCGACCGGCTGCGATTACGCGGACCCAATGGTGCCCAGGATGAGTTCCACCTCGCCGCTGCCGCCCAGAAC
CTGCGCAAGCTCGCCAAGATCAGCATCGCCAGGCAGATGGCGATGACATGAGGTCAGGCGACTCTGCTCAGCCGTTTCGATCCGTACCCTCCGCTTCGCC
GAGAAGGCGACTTTTTCAACGGTATC
GCAGGAGGCCTTGTTCTACGAATTCAGTCTGGATCGACACGTTCCGGCAGATCATCTGCTACGGGCAATCGACCGGTTCGTGGACCTGTCGGGGATGCGC
GAGCACCTGCGCGGCTTTTACAGCGCGATTGGTCGCCCTTCGATCGACCCTGAGCTGATGCTGCGGATGCTGATCGTGGGGTACTGCTTCGGCATCAGGT
CGGAGCGCCGCCTGTGCGAAGAGGTGCACCTCAACCTAGCTTACCGCTGGTTCTGCCGCCTGGGTCTCGACGGCGACGTGCCGGATCACTCGACCTTCTC
GAAGAACCGGCATGGGCGCTTCCGTGAGAGTGATCTGTTCCGCCAGTTGTTTGAAGCCACCGTGCGGCGCTGCATTGAGGAAGGACTGGTCGGCGGCGAC
GGCTTCGCTGTCGATGCCAGCCTGATCCGCGCCGAGGCCAACCGGCAGACCTATGTCGAGGGAACGCAGGGGCTTGGCGCTGTTCGGGCAGGGCGTGCCG
TCGAGGAGTATCTCGCCGTACTCGACGATGCCGTTTTCGGCGGCGCAACGCCGGTTGATCCCAAACGCGTTTCGCCTGTCGATCCTGCGGCCCGCTATAC
CCAGGCGCACGGCAACCGCGCCGACTTCTGCTACGCCACCAACTACCTGATCGACGTCGACAATGCGGTGATCGTTGATGTCGAGGCGAGCACGGCGGTG
CGCCAGGCCGAGGTGACCGCCGCCAAACGGATGATCGAGCGGGCAGCCGATTGCCATGGTCTATGGCCCCGCAAGCTGATCGGCGACACCGGCTATGGCT
CTGCGGGCATGCTCGCCTGGCTCGTCCACGAGCGTGGCATCGAGCCGCATGTGCCCGTCTTCGACAAGTCCGCCAGGAGCGATGGCGCTTTCGAGCGCAG
CGACTTCACCTTCGATCACAAGGATGACAGCTATATCTGCCCGGCCGGCAAGCGTCTGCGACCGCGTAACCGCAATTTCACCTCGCCGCGACCGGAGGCC
GACCAGGACGGCTTCATCCGCTACCGAGCGCGGCAGCAGGACTGCAGCAACTGCGCGCTCAAGCCACAATGCACACCCATCCTGCCGGCTCGCAAGGTGA
CCCGCTCCATCCACGAGGGCGCTCGCGATCTCGCTCGGGCCCTGTCGCAGGAAGATGAATGGATCGCCTCACGCCGCGAGCGCAAGAAGGTCGAGATGCT
GTTTGCCCACCTGAAGCGCATCATGCGGCTCGACCGGCTGCGATTACGCGGACCCAATGGTGCCCAGGATGAGTTCCACCTCGCCGCTGCCGCCCAGAAC
CTGCGCAAGCTCGCCAAGATCAGCATCGCCAGGCAGATGGCGATGACATGAGGTCAGGCGACTCTGCTCAGCCGTTTCGATCCGTACCCTCCGCTTCGCC
GAGAAGGCGACTTTTTCAACGGTATC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1374 bp | 457 aa | 78 | 1451 | + | No |
Chemistry : DDE
ORF sequence :
MMGERRVAQEALFYEFSLDRHVPADHLLRAIDRFVDLSGMREHLRGFYSAIGRPSIDPELMLRMLIVGYCFGIRSERRLCEEVHLNLAYRWFCRLGLDGD
VPDHSTFSKNRHGRFRESDLFRQLFEATVRRCIEEGLVGGDGFAVDASLIRAEANRQTYVEGTQGLGAVRAGRAVEEYLAVLDDAVFGGATPVDPKRVSP
VDPAARYTQAHGNRADFCYATNYLIDVDNAVIVDVEASTAVRQAEVTAAKRMIERAADCHGLWPRKLIGDTGYGSAGMLAWLVHERGIEPHVPVFDKSAR
SDGAFERSDFTFDHKDDSYICPAGKRLRPRNRNFTSPRPEADQDGFIRYRARQQDCSNCALKPQCTPILPARKVTRSIHEGARDLARALSQEDEWIASRR
ERKKVEMLFAHLKRIMRLDRLRLRGPNGAQDEFHLAAAAQNLRKLAKISIARQMAMT
VPDHSTFSKNRHGRFRESDLFRQLFEATVRRCIEEGLVGGDGFAVDASLIRAEANRQTYVEGTQGLGAVRAGRAVEEYLAVLDDAVFGGATPVDPKRVSP
VDPAARYTQAHGNRADFCYATNYLIDVDNAVIVDVEASTAVRQAEVTAAKRMIERAADCHGLWPRKLIGDTGYGSAGMLAWLVHERGIEPHVPVFDKSAR
SDGAFERSDFTFDHKDDSYICPAGKRLRPRNRNFTSPRPEADQDGFIRYRARQQDCSNCALKPQCTPILPARKVTRSIHEGARDLARALSQEDEWIASRR
ERKKVEMLFAHLKRIMRLDRLRLRGPNGAQDEFHLAAAAQNLRKLAKISIARQMAMT
Blast result :
Comments
ISShsp2 is 49% aa similar to ISBma2.
This sequence was renamed because it used a name (ISShsp1) already attributed to another sequence.
This sequence was renamed because it used a name (ISShsp1) already attributed to another sequence.
References
1] ISfinder annotation (2005)
2] Inoue,K., Widada,J., Nakai,S., Endoh,T., Urata,M., Ashikawa,Y., Shintani,M., Saiki,Y., Yoshida,T., Habe,H., Omori,T. and Nojiri,H.(2004) Biosci. Biotechnol. Biochem. 68 (7), 1467-1480
2] Inoue,K., Widada,J., Nakai,S., Endoh,T., Urata,M., Ashikawa,Y., Shintani,M., Saiki,Y., Yoshida,T., Habe,H., Omori,T. and Nojiri,H.(2004) Biosci. Biotechnol. Biochem. 68 (7), 1467-1480