ISMhu2

  • Family IS1182
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_007796 ND Methanospirillum hungatei
Methanospirillum hungatei JF-1
DNA section
IS Length : 1760 bp

Ends


IR Length : 14/16

IRL : GAGGCTGTTGCACAAACACAAAAAAAGCTTAATATAAATTATTAAAGCTT
IRR : GAGGGTGTTGCACCAATGATCAATATCATGCAGGATCACAAATGATCGAT

Insertion site


Left flankDirect repeatRight flankDR Length
TCCTAATTTTTTTAATTGTTATCCTTATCAATTCTT5

DNA sequence

GAGGCTGTTGCACAAACACAAAAAAAGCTTAATATAAATTATTAAAGCTTAATTATATATATTATTAAGATCAATATATTATATGTCTCATCGCTATAAC
ATGATTAGAGGATATGGTAATGAACAACAATTTTTACTCCCTGTCAATGCGATGGACTGGCTATCTGAAAATGATATTACTTATGGCATATTAGAAATTC
TTTCGATTCTCGATATTAGTCCATTTATTAATAAATATCGTGACGATGGTCGCGGTTCTGCCTTTTTTGATCCTCGTTCAATGCTTGGAATAATAATTTA
TTCAATGATTCGTGGAGAAAAATCTAGCAGAAAAATTGAGATGTGCTGCCATTATGATATTGGATATCGGATCGTCGCCAATAATCTTACACCTGACCAT
ACAACGATCTATCGTTTCAAGAAGAATAATTCAAAAGAAATCAAATCCCTTTTTAAACAATTATCTCAAATTATCGTAGAATCCGGGATAGCAAGAATCG
GTGTCCTAGCCCTCGATGGATCAAAATTTGGCTGTAATGCCTCTTTATCAGCCAATAAAAAATTAAAATACCTTGAAGCAGAGCTAGGTCGGCTTTTTGA
TGAATCACAGGAAATTGATGAGTTAGAAAACGATGATATAAATATTCAGGATATGGAGATTAACCGACTACCTGAGCATCTTTCAACAAAAGAAAAACGA
AAGGAAGTTCTTAATCGGGCTAAAGAGAAATTAATTGAACGACATGATATCGAATCTAAAAAACAAGAAGAAAAGATTCTGGACCGCGAAAAAGAAGAAT
TAGAATCGGGTAAAAAGAAACGAGGTAGAAAGCCTTTAGAGCCTAAAAAAGAGCCATCTTCAGATTCAAAAGTAAATCTCACTGATCCTGAAAGTCAGAT
AATGTCAACCACCAATGGCTGGATTCAAGGGTATAATGGGCAGATTATCGTTTCTGAAAATCAATTTATCCTCGCTGCAATGATATCAGATGAGCAAAAC
GATAAAAAATTATTAATACCTATGCTAAATGAACTCGAAGACCTTTTTACGGGTATTCATCCATCAATTTCGCCTAATATACTACTATCTGATGCAGGTT
ATTTCTCATACCCGAATTCTTTAGCAGAATTGGATTATGGCATTCAACTCATCATCCCTCCTTCTAAAGAAAGAAAAATTCCAGAATATTCAGATAATGA
TGGGTATATCTCACGAATGGAAATGATATGTCGGGCGATTTGTATGGGAGAAATAATCACATTTCCGGAATTGCAAAGTATCGGGACGTTTGTTTGGCAA
TCTTTTATGAACAGAGAGAAACAAGCAACAACTCAGGAAATTTGTAAACGAGTTATGGAAGTACGTGTGAAATCCCCCACTGGTAGAGAGTTATATCGAA
AACGAAAATACATGGTCGAACCAGTTTTTGGTAATATGAAACATAATATGAGGTTTAGGAGTTTCTCTCAAAAAGGGAAAGAGAATTGCGAGGGAGAATT
CTTTTTAGCTGCATTAGTGCATAATATAAAAAAACTTATCAGATTTGAGGGTATAGTTAAAATTAAAGAATTTGCTACGAATATTATAAAACCGTCAAGA
GGTTCAGGTTTTTCCTATATTTTTGCAAACACAGTATGTAAAGTGGGAATTGATACATGCAGGTTCATACATCAATTAGTCTATTTTGGTTGATAGCTTA
AGGGGTAGAGATCGATCATTTGTGATCCTGCATGATATTGATCATTGGTGCAACACCCTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1611 bp536 aa831693+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSHRYNMIRGYGNEQQFLLPVNAMDWLSENDITYGILEILSILDISPFINKYRDDGRGSAFFDPRSMLGIIIYSMIRGEKSSRKIEMCCHYDIGYRIVAN
NLTPDHTTIYRFKKNNSKEIKSLFKQLSQIIVESGIARIGVLALDGSKFGCNASLSANKKLKYLEAELGRLFDESQEIDELENDDINIQDMEINRLPEHL
STKEKRKEVLNRAKEKLIERHDIESKKQEEKILDREKEELESGKKKRGRKPLEPKKEPSSDSKVNLTDPESQIMSTTNGWIQGYNGQIIVSENQFILAAM
ISDEQNDKKLLIPMLNELEDLFTGIHPSISPNILLSDAGYFSYPNSLAELDYGIQLIIPPSKERKIPEYSDNDGYISRMEMICRAICMGEIITFPELQSI
GTFVWQSFMNREKQATTQEICKRVMEVRVKSPTGRELYRKRKYMVEPVFGNMKHNMRFRSFSQKGKENCEGEFFLAALVHNIKKLIRFEGIVKIKEFATN
IIKPSRGSGFSYIFANTVCKVGIDTCRFIHQLVYFG

 

Blast result :
Comments
There are 18 complete copies in Methanospirillum hungatei JF-1 genome.
References
1] ISfinder annotation (2006)
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina,T., Hammon,N., Israni,S., Pitluck,S., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Kiss,H., Schmutz,J., Larimer,F., Land,M., Kyrpides,N., Ivanova,N., McInerney,M.J., Brockman,F., Culley,D., Ferry,J.G., Gunsalus,R.P., Morrison,M., Plugge,C., Scholten,J., Stams,A.J.M., Boone,D.R. and Richardson,P. (2006) Direct submission GenBank.