ISSyth1
- Family IS1182
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_006177 | ND | Symbiobacterium thermophilum | Symbiobacterium thermophilum IAM 14863 |
DNA section
IS Length : 1528 bp
Ends
IR Length : 14/16
IRL : GAGCCTGTCTGAGTAAGCCAGTTCTGTAGGAGCGAAAGGGTTGGGTGTCC
IRR : GAGCCTGTCCGGGTAACCGCACGTGAGATAGGGGCAGACTCCCAATGATT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
NNNNNNNNNN | CTAG | NNNNNNNNNN | 4 |
DNA sequence
GAGCCTGTCTGAGTAAGCCAGTTCTGTAGGAGCGAAAGGGTTGGGTGTCCAATGTCTTCATCATGAGCAAGAAGACGTATCGACCGTATCAGCCCAATCA
GCTGTTGCTGCTGCCCCCTGCCCTGCAGGACTGGCTTCCGCATGACCATTTCGCTTATTTCCTGAGTGATGTCGTGGACTCACTCGATCTAAGCCAAATC
GAACGGACATACGAGCGAGAGCTGCGAGGTTACCCACCGTACCATCCGCGGATGATGGTCAAGGTGCTGCTGTACGCCTACTGCAACGGCGTCTACTCCT
CTCGCAAGATCGAACGCCGGCTGCAGGAGGACGTAGCCTTCCGCGTCCTTGCGGCCAACAACCAGCCCGACTTCCGGACGATCAGCGATTTCCGGAAGCG
GCATCTAAAGGCCCTCTCCGACCTGTTCCTGCAAGTGGTCAAGATCTGCAAGAAGGCCGGGCTGGTTCGCCTGGGTCATGTGGCCCTGGACGGCACCAAG
ATCAAGGCCAACGCCTCCAAGCACAAGGCGATGAGCTACAGCCGGATGGTGGAGGAAGAACAACGCCTGAAGGCGGAGATCGCAGAGCTGCTCCAGAAAG
CCGAGCAAGCTGACCAGGCCGAGGATCACCGCTTCGGCCCACATCGTCGTGGGGATGAACTGCCCGAAGAACTCCGCTTCCGTGAGCGGCGGCTGGCCAA
GATTCAAGAAGCCAAGGCTGCTCTGGAAGCCGAAGCGCGCCTGAGGGCCGGCGCTGACGAACATGAGCCTCCCGAGGAGCCGGGACCCAAGGGGCCCAAG
GGCGGTCGTCGGCGGAAGCGGCCGAAGGCAGAACCCGCACCAACAGCGCAGCGCAACTTTACGGATCCCGATTCCCGGATCATGAAAGGCTCTGACAAGC
AGTTCATCCAGGGGTACAACGCCCAGGCCGTCGTCGATGCCGATACGCAGATTGTCGTCGCTGCTGCCGTAACAAACCAGGCGGCAGATGCTCCGCACTT
GATCCCCATGATGGAGCAGGTCGAAACCAATGTCGATGAGATGCCGGAGGAGGTTTCTGCCGATGCAGGGTACTTCAGTGAGCAAAACGTTCAGTGGCTC
TTGCAGCGGCGAATCAATCCCTACATTCCTCCGGAGAAGCAGCGGCACAGCGAACGTCGCCGTGCGAAATCACCACGCGGCCCGATTCCCAAGGGAGCAA
CGCTTCGGGATCGGATGCGGCGGAAACTGCAGCTAAAGCGACACGCCGAGCGCTACCGAAAGCGAGAGCAGAGCATTGAGCCGGTCTTCGGGCAGATCAA
GGAGGCTCGTGGTTTCCGGCAGTTCCATCTCCGTGGACTGGAAGCAGTCAACGGGGAATGGCTTCTTGTGTGCCTTTGCCACAATCTCTTGAAGCTCTAC
GCCTTCAGCCAGGCCGCATAGGCCCGAAATCTGCCTTCAGACAGCGCATGAAGAAGTAGGCACGATCGTTGATATCCAATCATTGGGAGTCTGCCCCTAT
CTCACGTGCGGTTACCCGGACAGGCTC
GCTGTTGCTGCTGCCCCCTGCCCTGCAGGACTGGCTTCCGCATGACCATTTCGCTTATTTCCTGAGTGATGTCGTGGACTCACTCGATCTAAGCCAAATC
GAACGGACATACGAGCGAGAGCTGCGAGGTTACCCACCGTACCATCCGCGGATGATGGTCAAGGTGCTGCTGTACGCCTACTGCAACGGCGTCTACTCCT
CTCGCAAGATCGAACGCCGGCTGCAGGAGGACGTAGCCTTCCGCGTCCTTGCGGCCAACAACCAGCCCGACTTCCGGACGATCAGCGATTTCCGGAAGCG
GCATCTAAAGGCCCTCTCCGACCTGTTCCTGCAAGTGGTCAAGATCTGCAAGAAGGCCGGGCTGGTTCGCCTGGGTCATGTGGCCCTGGACGGCACCAAG
ATCAAGGCCAACGCCTCCAAGCACAAGGCGATGAGCTACAGCCGGATGGTGGAGGAAGAACAACGCCTGAAGGCGGAGATCGCAGAGCTGCTCCAGAAAG
CCGAGCAAGCTGACCAGGCCGAGGATCACCGCTTCGGCCCACATCGTCGTGGGGATGAACTGCCCGAAGAACTCCGCTTCCGTGAGCGGCGGCTGGCCAA
GATTCAAGAAGCCAAGGCTGCTCTGGAAGCCGAAGCGCGCCTGAGGGCCGGCGCTGACGAACATGAGCCTCCCGAGGAGCCGGGACCCAAGGGGCCCAAG
GGCGGTCGTCGGCGGAAGCGGCCGAAGGCAGAACCCGCACCAACAGCGCAGCGCAACTTTACGGATCCCGATTCCCGGATCATGAAAGGCTCTGACAAGC
AGTTCATCCAGGGGTACAACGCCCAGGCCGTCGTCGATGCCGATACGCAGATTGTCGTCGCTGCTGCCGTAACAAACCAGGCGGCAGATGCTCCGCACTT
GATCCCCATGATGGAGCAGGTCGAAACCAATGTCGATGAGATGCCGGAGGAGGTTTCTGCCGATGCAGGGTACTTCAGTGAGCAAAACGTTCAGTGGCTC
TTGCAGCGGCGAATCAATCCCTACATTCCTCCGGAGAAGCAGCGGCACAGCGAACGTCGCCGTGCGAAATCACCACGCGGCCCGATTCCCAAGGGAGCAA
CGCTTCGGGATCGGATGCGGCGGAAACTGCAGCTAAAGCGACACGCCGAGCGCTACCGAAAGCGAGAGCAGAGCATTGAGCCGGTCTTCGGGCAGATCAA
GGAGGCTCGTGGTTTCCGGCAGTTCCATCTCCGTGGACTGGAAGCAGTCAACGGGGAATGGCTTCTTGTGTGCCTTTGCCACAATCTCTTGAAGCTCTAC
GCCTTCAGCCAGGCCGCATAGGCCCGAAATCTGCCTTCAGACAGCGCATGAAGAAGTAGGCACGATCGTTGATATCCAATCATTGGGAGTCTGCCCCTAT
CTCACGTGCGGTTACCCGGACAGGCTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1377 bp | 458 aa | 45 | 1421 | + | No |
Chemistry : DDE
ORF sequence :
MSNVFIMSKKTYRPYQPNQLLLLPPALQDWLPHDHFAYFLSDVVDSLDLSQIERTYERELRGYPPYHPRMMVKVLLYAYCNGVYSSRKIERRLQEDVAFR
VLAANNQPDFRTISDFRKRHLKALSDLFLQVVKICKKAGLVRLGHVALDGTKIKANASKHKAMSYSRMVEEEQRLKAEIAELLQKAEQADQAEDHRFGPH
RRGDELPEELRFRERRLAKIQEAKAALEAEARLRAGADEHEPPEEPGPKGPKGGRRRKRPKAEPAPTAQRNFTDPDSRIMKGSDKQFIQGYNAQAVVDAD
TQIVVAAAVTNQAADAPHLIPMMEQVETNVDEMPEEVSADAGYFSEQNVQWLLQRRINPYIPPEKQRHSERRRAKSPRGPIPKGATLRDRMRRKLQLKRH
AERYRKREQSIEPVFGQIKEARGFRQFHLRGLEAVNGEWLLVCLCHNLLKLYAFSQAA
VLAANNQPDFRTISDFRKRHLKALSDLFLQVVKICKKAGLVRLGHVALDGTKIKANASKHKAMSYSRMVEEEQRLKAEIAELLQKAEQADQAEDHRFGPH
RRGDELPEELRFRERRLAKIQEAKAALEAEARLRAGADEHEPPEEPGPKGPKGGRRRKRPKAEPAPTAQRNFTDPDSRIMKGSDKQFIQGYNAQAVVDAD
TQIVVAAAVTNQAADAPHLIPMMEQVETNVDEMPEEVSADAGYFSEQNVQWLLQRRINPYIPPEKQRHSERRRAKSPRGPIPKGATLRDRMRRKLQLKRH
AERYRKREQSIEPVFGQIKEARGFRQFHLRGLEAVNGEWLLVCLCHNLLKLYAFSQAA
Blast result :
Comments
ISSyth1 is 42% aa similar to IS660. There are 7 full copies and one partial copy in the Symbiobacterium thermophilum IAM 14863 genome.
References
1] ISfinder annotation (2005)
2] Ueda,K., Yamashita,A., Ishikawa,J., Shimada,M., Watsuji,T.O., Morimura,K., Ikeda,H., Hattori,M. and Beppu,T. (2004) Nucleic Acids Res. 32 (16), 4937-4944
2] Ueda,K., Yamashita,A., Ishikawa,J., Shimada,M., Watsuji,T.O., Morimura,K., Ikeda,H., Hattori,M. and Beppu,T. (2004) Nucleic Acids Res. 32 (16), 4937-4944