ISSyth1

  • Family IS1182
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_006177 ND Symbiobacterium thermophilum
Symbiobacterium thermophilum IAM 14863
DNA section
IS Length : 1528 bp

Ends


IR Length : 14/16

IRL : GAGCCTGTCTGAGTAAGCCAGTTCTGTAGGAGCGAAAGGGTTGGGTGTCC
IRR : GAGCCTGTCCGGGTAACCGCACGTGAGATAGGGGCAGACTCCCAATGATT

Insertion site


Left flankDirect repeatRight flankDR Length
NNNNNNNNNNCTAGNNNNNNNNNN4

DNA sequence

GAGCCTGTCTGAGTAAGCCAGTTCTGTAGGAGCGAAAGGGTTGGGTGTCCAATGTCTTCATCATGAGCAAGAAGACGTATCGACCGTATCAGCCCAATCA
GCTGTTGCTGCTGCCCCCTGCCCTGCAGGACTGGCTTCCGCATGACCATTTCGCTTATTTCCTGAGTGATGTCGTGGACTCACTCGATCTAAGCCAAATC
GAACGGACATACGAGCGAGAGCTGCGAGGTTACCCACCGTACCATCCGCGGATGATGGTCAAGGTGCTGCTGTACGCCTACTGCAACGGCGTCTACTCCT
CTCGCAAGATCGAACGCCGGCTGCAGGAGGACGTAGCCTTCCGCGTCCTTGCGGCCAACAACCAGCCCGACTTCCGGACGATCAGCGATTTCCGGAAGCG
GCATCTAAAGGCCCTCTCCGACCTGTTCCTGCAAGTGGTCAAGATCTGCAAGAAGGCCGGGCTGGTTCGCCTGGGTCATGTGGCCCTGGACGGCACCAAG
ATCAAGGCCAACGCCTCCAAGCACAAGGCGATGAGCTACAGCCGGATGGTGGAGGAAGAACAACGCCTGAAGGCGGAGATCGCAGAGCTGCTCCAGAAAG
CCGAGCAAGCTGACCAGGCCGAGGATCACCGCTTCGGCCCACATCGTCGTGGGGATGAACTGCCCGAAGAACTCCGCTTCCGTGAGCGGCGGCTGGCCAA
GATTCAAGAAGCCAAGGCTGCTCTGGAAGCCGAAGCGCGCCTGAGGGCCGGCGCTGACGAACATGAGCCTCCCGAGGAGCCGGGACCCAAGGGGCCCAAG
GGCGGTCGTCGGCGGAAGCGGCCGAAGGCAGAACCCGCACCAACAGCGCAGCGCAACTTTACGGATCCCGATTCCCGGATCATGAAAGGCTCTGACAAGC
AGTTCATCCAGGGGTACAACGCCCAGGCCGTCGTCGATGCCGATACGCAGATTGTCGTCGCTGCTGCCGTAACAAACCAGGCGGCAGATGCTCCGCACTT
GATCCCCATGATGGAGCAGGTCGAAACCAATGTCGATGAGATGCCGGAGGAGGTTTCTGCCGATGCAGGGTACTTCAGTGAGCAAAACGTTCAGTGGCTC
TTGCAGCGGCGAATCAATCCCTACATTCCTCCGGAGAAGCAGCGGCACAGCGAACGTCGCCGTGCGAAATCACCACGCGGCCCGATTCCCAAGGGAGCAA
CGCTTCGGGATCGGATGCGGCGGAAACTGCAGCTAAAGCGACACGCCGAGCGCTACCGAAAGCGAGAGCAGAGCATTGAGCCGGTCTTCGGGCAGATCAA
GGAGGCTCGTGGTTTCCGGCAGTTCCATCTCCGTGGACTGGAAGCAGTCAACGGGGAATGGCTTCTTGTGTGCCTTTGCCACAATCTCTTGAAGCTCTAC
GCCTTCAGCCAGGCCGCATAGGCCCGAAATCTGCCTTCAGACAGCGCATGAAGAAGTAGGCACGATCGTTGATATCCAATCATTGGGAGTCTGCCCCTAT
CTCACGTGCGGTTACCCGGACAGGCTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1377 bp458 aa451421+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSNVFIMSKKTYRPYQPNQLLLLPPALQDWLPHDHFAYFLSDVVDSLDLSQIERTYERELRGYPPYHPRMMVKVLLYAYCNGVYSSRKIERRLQEDVAFR
VLAANNQPDFRTISDFRKRHLKALSDLFLQVVKICKKAGLVRLGHVALDGTKIKANASKHKAMSYSRMVEEEQRLKAEIAELLQKAEQADQAEDHRFGPH
RRGDELPEELRFRERRLAKIQEAKAALEAEARLRAGADEHEPPEEPGPKGPKGGRRRKRPKAEPAPTAQRNFTDPDSRIMKGSDKQFIQGYNAQAVVDAD
TQIVVAAAVTNQAADAPHLIPMMEQVETNVDEMPEEVSADAGYFSEQNVQWLLQRRINPYIPPEKQRHSERRRAKSPRGPIPKGATLRDRMRRKLQLKRH
AERYRKREQSIEPVFGQIKEARGFRQFHLRGLEAVNGEWLLVCLCHNLLKLYAFSQAA

 

Blast result :
Comments
ISSyth1 is 42% aa similar to IS660. There are 7 full copies and one partial copy in the Symbiobacterium thermophilum IAM 14863 genome.
References
1] ISfinder annotation (2005)
2] Ueda,K., Yamashita,A., Ishikawa,J., Shimada,M., Watsuji,T.O., Morimura,K., Ikeda,H., Hattori,M. and Beppu,T. (2004) Nucleic Acids Res. 32 (16), 4937-4944