ISArch1
- Family IS1182
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AY714861 | ND | Uncultured archaeon | Uncultured archaeon GZfos34H10 clone GZfos34H10 |
DNA section
IS Length : 1736 bp
Ends
IR Length : 16/17
IRL : GAGGCTGTCCCATAATTCCATAATCAAACAGCTTTCCGATACTTTTATAT
IRR : GAGGCTGTCCCACAATTGACTTTAATTAGTACTATACTTGGTATATACTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CATGGGCACTCGTAC | TTAA | ATGCCGGGACCTG | 4 |
DNA sequence
GAGGCTGTCCCATAATTCCATAATCAAACAGCTTTCCGATACTTTTATATGCTTTCAACTACATATAAACATTATGGCATTCATAAGAAGACTCCGCAAC
CAAAATTGGCTATTTCCCCCAACTATAGCTGACTTAATTGAAGAAGACCACATTTGTAGACTTGTAGATGATGTAGTAGAAAGTATAGACTTTAAAAGTA
TCGAAGGGCGATATGATGGCCCTGGCAGTCCTGCATATCATCCAAAGGTCATGATGAAACTCCTCCTTCAGGGCACCATCGATGGTATTCGCTCTTCCAG
AAAGATTTCTAAGGCGACAAGGGAAAATGTTGTGTATATGTACCTTTCAGACCACTTGAACCCGGATTTCCGTACGATCTGCAGGTTCAGGAAGGATAAT
TTAGAAACTATCAAACTTGTTATTGCCGAGATTGCGAAATTAGCTCGGGAGATGGGCATGGTAAAACTCGGGCATTTAAGTATCGATGGCACAAAGATCA
AGGCGTCCGCCTCAAATTTCAGCGTAGTCTCTAAAGAAGAGCTTGATGAGATAAAAGAGGCTATTGACATGGAACTTCAAAAAGGCATCGAAATTGATGA
GATGGAGGACCATATTTATGGCGATACCGATCCAGACAAGCTTCCAAAATCTTTCAAAGACCTCAAAGAGAAGATAAGAAAAGATAAAGCAGCAAAGATC
ATCGACCAGTATAAAAACGGCGACCAGAAAGAGAAGAAGCGAATCGAAAAACAACTTGGCAAGGTTCAAAATGAACTTGAAGTATCAGGGAAAGATTTTG
TGAGTTTTACCGATCCGGAAAGCAGGTTCATGAAAAACAAAAAGCATTTCTCCGAATTCTCATATAACCCTCAGGTAACGGTAGATGCGGAACATGGAAT
TGTCGTTGCAGAGGATGTAGTCCAAAAGGTCCGGGATGTAGAGCAATTGAAGCCACAAATCGAACAGATCGAGGAAGTTTTTGGTAAATTGCCAAAAAAT
ACAATTATATCCGCCGATAATGACTATCACTCTGCAGAAAACATTGATTTTTTGAAAGAACACGAATTGGACGGATATATTCCTCATGAGAAGCTTGCCT
CCAAGATGCAAGGCAAAACTAAAGAATCGGGAAGGTTTGATAAAGATAATTTCAAATACAATGTCGAAAAGGATGATTTTACCTGCCCAAATGGAGAAAC
AGTAATATTCGGCTTTGAATACTTTGATAAACAGAAGGGAAAACAGGTGAGGGTTTATCGTGGTACTGGCTGTGCTCAATGTCCGGATAAAAAGCTCTGC
ACAAAAAGCAAGCGTGGACCAAGGCGGATCAAATGCTACGGCAATGAGGCTAATCTACGAGAGATGGCGGAGAAGATGGAATCGCCAGAAGGGCAGGAGG
TCTATCGTGTGAGAGCAAAAACGGTAGAACGGCTGTTCGGGCACGTTAAGCAAAATATTGGGTTAAGAGAGTTTTTGACCAGAGGTTTGCAAGGCGTGAG
GGCTGAATTCAGTCTAGCATGCATAGCACATAATTTGAAGAGAATATGGACGATAAAAAGTCAAACTAAAGCGATTGGAGTAAATTCTAGCAAAAATGGA
CGTATTGATCAATCATCACTCAAAAATATGCGTAGAAGCATTAAAGGGGTATGGTCCCAAATTTTATCTTCTTTTAGCAATGGTTTAAGTATATACCAAG
TATAGTACTAATTAAAGTCAATTGTGGGACAGCCTC
CAAAATTGGCTATTTCCCCCAACTATAGCTGACTTAATTGAAGAAGACCACATTTGTAGACTTGTAGATGATGTAGTAGAAAGTATAGACTTTAAAAGTA
TCGAAGGGCGATATGATGGCCCTGGCAGTCCTGCATATCATCCAAAGGTCATGATGAAACTCCTCCTTCAGGGCACCATCGATGGTATTCGCTCTTCCAG
AAAGATTTCTAAGGCGACAAGGGAAAATGTTGTGTATATGTACCTTTCAGACCACTTGAACCCGGATTTCCGTACGATCTGCAGGTTCAGGAAGGATAAT
TTAGAAACTATCAAACTTGTTATTGCCGAGATTGCGAAATTAGCTCGGGAGATGGGCATGGTAAAACTCGGGCATTTAAGTATCGATGGCACAAAGATCA
AGGCGTCCGCCTCAAATTTCAGCGTAGTCTCTAAAGAAGAGCTTGATGAGATAAAAGAGGCTATTGACATGGAACTTCAAAAAGGCATCGAAATTGATGA
GATGGAGGACCATATTTATGGCGATACCGATCCAGACAAGCTTCCAAAATCTTTCAAAGACCTCAAAGAGAAGATAAGAAAAGATAAAGCAGCAAAGATC
ATCGACCAGTATAAAAACGGCGACCAGAAAGAGAAGAAGCGAATCGAAAAACAACTTGGCAAGGTTCAAAATGAACTTGAAGTATCAGGGAAAGATTTTG
TGAGTTTTACCGATCCGGAAAGCAGGTTCATGAAAAACAAAAAGCATTTCTCCGAATTCTCATATAACCCTCAGGTAACGGTAGATGCGGAACATGGAAT
TGTCGTTGCAGAGGATGTAGTCCAAAAGGTCCGGGATGTAGAGCAATTGAAGCCACAAATCGAACAGATCGAGGAAGTTTTTGGTAAATTGCCAAAAAAT
ACAATTATATCCGCCGATAATGACTATCACTCTGCAGAAAACATTGATTTTTTGAAAGAACACGAATTGGACGGATATATTCCTCATGAGAAGCTTGCCT
CCAAGATGCAAGGCAAAACTAAAGAATCGGGAAGGTTTGATAAAGATAATTTCAAATACAATGTCGAAAAGGATGATTTTACCTGCCCAAATGGAGAAAC
AGTAATATTCGGCTTTGAATACTTTGATAAACAGAAGGGAAAACAGGTGAGGGTTTATCGTGGTACTGGCTGTGCTCAATGTCCGGATAAAAAGCTCTGC
ACAAAAAGCAAGCGTGGACCAAGGCGGATCAAATGCTACGGCAATGAGGCTAATCTACGAGAGATGGCGGAGAAGATGGAATCGCCAGAAGGGCAGGAGG
TCTATCGTGTGAGAGCAAAAACGGTAGAACGGCTGTTCGGGCACGTTAAGCAAAATATTGGGTTAAGAGAGTTTTTGACCAGAGGTTTGCAAGGCGTGAG
GGCTGAATTCAGTCTAGCATGCATAGCACATAATTTGAAGAGAATATGGACGATAAAAAGTCAAACTAAAGCGATTGGAGTAAATTCTAGCAAAAATGGA
CGTATTGATCAATCATCACTCAAAAATATGCGTAGAAGCATTAAAGGGGTATGGTCCCAAATTTTATCTTCTTTTAGCAATGGTTTAAGTATATACCAAG
TATAGTACTAATTAAAGTCAATTGTGGGACAGCCTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1632 bp | 543 aa | 74 | 1705 | + | No |
Chemistry : DDE
ORF sequence :
MAFIRRLRNQNWLFPPTIADLIEEDHICRLVDDVVESIDFKSIEGRYDGPGSPAYHPKVMMKLLLQGTIDGIRSSRKISKATRENVVYMYLSDHLNPDFR
TICRFRKDNLETIKLVIAEIAKLAREMGMVKLGHLSIDGTKIKASASNFSVVSKEELDEIKEAIDMELQKGIEIDEMEDHIYGDTDPDKLPKSFKDLKEK
IRKDKAAKIIDQYKNGDQKEKKRIEKQLGKVQNELEVSGKDFVSFTDPESRFMKNKKHFSEFSYNPQVTVDAEHGIVVAEDVVQKVRDVEQLKPQIEQIE
EVFGKLPKNTIISADNDYHSAENIDFLKEHELDGYIPHEKLASKMQGKTKESGRFDKDNFKYNVEKDDFTCPNGETVIFGFEYFDKQKGKQVRVYRGTGC
AQCPDKKLCTKSKRGPRRIKCYGNEANLREMAEKMESPEGQEVYRVRAKTVERLFGHVKQNIGLREFLTRGLQGVRAEFSLACIAHNLKRIWTIKSQTKA
IGVNSSKNGRIDQSSLKNMRRSIKGVWSQILSSFSNGLSIYQV
TICRFRKDNLETIKLVIAEIAKLAREMGMVKLGHLSIDGTKIKASASNFSVVSKEELDEIKEAIDMELQKGIEIDEMEDHIYGDTDPDKLPKSFKDLKEK
IRKDKAAKIIDQYKNGDQKEKKRIEKQLGKVQNELEVSGKDFVSFTDPESRFMKNKKHFSEFSYNPQVTVDAEHGIVVAEDVVQKVRDVEQLKPQIEQIE
EVFGKLPKNTIISADNDYHSAENIDFLKEHELDGYIPHEKLASKMQGKTKESGRFDKDNFKYNVEKDDFTCPNGETVIFGFEYFDKQKGKQVRVYRGTGC
AQCPDKKLCTKSKRGPRRIKCYGNEANLREMAEKMESPEGQEVYRVRAKTVERLFGHVKQNIGLREFLTRGLQGVRAEFSLACIAHNLKRIWTIKSQTKA
IGVNSSKNGRIDQSSLKNMRRSIKGVWSQILSSFSNGLSIYQV
Blast result :
Comments
ISArch1 is 49% aa similar to IS660.
References
1] ISfinder annotation (2005)
2] Hallam,S.J., Putnam,N., Preston,C.M., Detter,J.C., Rokhsar,D., Richardson,P.M. and DeLong,E.F.(2004) Science 305 (5689), 1457-1462 (2004)
2] Hallam,S.J., Putnam,N., Preston,C.M., Detter,J.C., Rokhsar,D., Richardson,P.M. and DeLong,E.F.(2004) Science 305 (5689), 1457-1462 (2004)