ISArch1

  • Family IS1182
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AY714861 ND Uncultured archaeon
Uncultured archaeon GZfos34H10 clone GZfos34H10
DNA section
IS Length : 1736 bp

Ends


IR Length : 16/17

IRL : GAGGCTGTCCCATAATTCCATAATCAAACAGCTTTCCGATACTTTTATAT
IRR : GAGGCTGTCCCACAATTGACTTTAATTAGTACTATACTTGGTATATACTT

Insertion site


Left flankDirect repeatRight flankDR Length
CATGGGCACTCGTACTTAAATGCCGGGACCTG4

DNA sequence

GAGGCTGTCCCATAATTCCATAATCAAACAGCTTTCCGATACTTTTATATGCTTTCAACTACATATAAACATTATGGCATTCATAAGAAGACTCCGCAAC
CAAAATTGGCTATTTCCCCCAACTATAGCTGACTTAATTGAAGAAGACCACATTTGTAGACTTGTAGATGATGTAGTAGAAAGTATAGACTTTAAAAGTA
TCGAAGGGCGATATGATGGCCCTGGCAGTCCTGCATATCATCCAAAGGTCATGATGAAACTCCTCCTTCAGGGCACCATCGATGGTATTCGCTCTTCCAG
AAAGATTTCTAAGGCGACAAGGGAAAATGTTGTGTATATGTACCTTTCAGACCACTTGAACCCGGATTTCCGTACGATCTGCAGGTTCAGGAAGGATAAT
TTAGAAACTATCAAACTTGTTATTGCCGAGATTGCGAAATTAGCTCGGGAGATGGGCATGGTAAAACTCGGGCATTTAAGTATCGATGGCACAAAGATCA
AGGCGTCCGCCTCAAATTTCAGCGTAGTCTCTAAAGAAGAGCTTGATGAGATAAAAGAGGCTATTGACATGGAACTTCAAAAAGGCATCGAAATTGATGA
GATGGAGGACCATATTTATGGCGATACCGATCCAGACAAGCTTCCAAAATCTTTCAAAGACCTCAAAGAGAAGATAAGAAAAGATAAAGCAGCAAAGATC
ATCGACCAGTATAAAAACGGCGACCAGAAAGAGAAGAAGCGAATCGAAAAACAACTTGGCAAGGTTCAAAATGAACTTGAAGTATCAGGGAAAGATTTTG
TGAGTTTTACCGATCCGGAAAGCAGGTTCATGAAAAACAAAAAGCATTTCTCCGAATTCTCATATAACCCTCAGGTAACGGTAGATGCGGAACATGGAAT
TGTCGTTGCAGAGGATGTAGTCCAAAAGGTCCGGGATGTAGAGCAATTGAAGCCACAAATCGAACAGATCGAGGAAGTTTTTGGTAAATTGCCAAAAAAT
ACAATTATATCCGCCGATAATGACTATCACTCTGCAGAAAACATTGATTTTTTGAAAGAACACGAATTGGACGGATATATTCCTCATGAGAAGCTTGCCT
CCAAGATGCAAGGCAAAACTAAAGAATCGGGAAGGTTTGATAAAGATAATTTCAAATACAATGTCGAAAAGGATGATTTTACCTGCCCAAATGGAGAAAC
AGTAATATTCGGCTTTGAATACTTTGATAAACAGAAGGGAAAACAGGTGAGGGTTTATCGTGGTACTGGCTGTGCTCAATGTCCGGATAAAAAGCTCTGC
ACAAAAAGCAAGCGTGGACCAAGGCGGATCAAATGCTACGGCAATGAGGCTAATCTACGAGAGATGGCGGAGAAGATGGAATCGCCAGAAGGGCAGGAGG
TCTATCGTGTGAGAGCAAAAACGGTAGAACGGCTGTTCGGGCACGTTAAGCAAAATATTGGGTTAAGAGAGTTTTTGACCAGAGGTTTGCAAGGCGTGAG
GGCTGAATTCAGTCTAGCATGCATAGCACATAATTTGAAGAGAATATGGACGATAAAAAGTCAAACTAAAGCGATTGGAGTAAATTCTAGCAAAAATGGA
CGTATTGATCAATCATCACTCAAAAATATGCGTAGAAGCATTAAAGGGGTATGGTCCCAAATTTTATCTTCTTTTAGCAATGGTTTAAGTATATACCAAG
TATAGTACTAATTAAAGTCAATTGTGGGACAGCCTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1632 bp543 aa741705+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MAFIRRLRNQNWLFPPTIADLIEEDHICRLVDDVVESIDFKSIEGRYDGPGSPAYHPKVMMKLLLQGTIDGIRSSRKISKATRENVVYMYLSDHLNPDFR
TICRFRKDNLETIKLVIAEIAKLAREMGMVKLGHLSIDGTKIKASASNFSVVSKEELDEIKEAIDMELQKGIEIDEMEDHIYGDTDPDKLPKSFKDLKEK
IRKDKAAKIIDQYKNGDQKEKKRIEKQLGKVQNELEVSGKDFVSFTDPESRFMKNKKHFSEFSYNPQVTVDAEHGIVVAEDVVQKVRDVEQLKPQIEQIE
EVFGKLPKNTIISADNDYHSAENIDFLKEHELDGYIPHEKLASKMQGKTKESGRFDKDNFKYNVEKDDFTCPNGETVIFGFEYFDKQKGKQVRVYRGTGC
AQCPDKKLCTKSKRGPRRIKCYGNEANLREMAEKMESPEGQEVYRVRAKTVERLFGHVKQNIGLREFLTRGLQGVRAEFSLACIAHNLKRIWTIKSQTKA
IGVNSSKNGRIDQSSLKNMRRSIKGVWSQILSSFSNGLSIYQV

 

Blast result :
Comments
ISArch1 is 49% aa similar to IS660.
References
1] ISfinder annotation (2005)
2] Hallam,S.J., Putnam,N., Preston,C.M., Detter,J.C., Rokhsar,D., Richardson,P.M. and DeLong,E.F.(2004) Science 305 (5689), 1457-1462 (2004)