ISFnu7

  • Family IS1182
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Fusobacterium nucleatum
Fusobacterium nucleatum subsp. vincentii ATCC 49256
DNA section
IS Length : 1756 bp

Ends


IR Length : 15

IRL : GGGCTGTTGCAAATTAAATAATTAAGTCCCAAAAGAAAAAGTGACACTAG
IRR : GGGGCTGTTGCAAATTGATGGTTTTTATCATCAGCTTGTAACAGCTTTTT

Insertion site


Left flankDirect repeatRight flankDR Length
TTTCTCAATGAAAAAATTATTTTTCACTAAAAAA0

DNA sequence

GGGCTGTTGCAAATTAAATAATTAAGTCCCAAAAGAAAAAGTGACACTAGAAAACAATTTTTGTGATTTAGTGCCATTTTTAATTTAAAAAGTATATTAC
ATAAATTTTTTAGAAATTTTCCTCAAAATTTAATATAATATACTTATGATAAAAGTAATTAATAATAACAGATATTTTAAATTTTTTCAACCTAAACTTT
TTTACATTAATCAAGATATTGATAATGATGACCCTGTTAGGTTTCTTAGCGCCATTCTGGAGGAAATGGATTTTTCTAATTTATTGCAAGTTTTTCCTAA
CAAAACTAAGGTGCATCCTGTCAATATGTTTGCTGTAATCATTTATGCTTACTCACAAGGCAAATATTCTACAAGGGATATTGAATTTCTTTGTAAAGAT
AGTCAAAGAACCAAATTCTTATTGAATTCGGCTAATACTCCTAATTATTCAACTATTTCGCGCTTTCTTTCAAAAGCTAATAATATCATCTACGAATTGT
TTTGTCAATTTGTGGAAAAACTATTAAAATTAAGTGAAATCACCACTGAAACTATTTACATTGATGGAACTAAAATTGAAGCTTATGCTAATAAATATAG
CTTTGTTTGGAAAAAATCTACTCTAAAATATAAAGAAAGACTTGAAGAAAATATCTTACAACTAATTGATGAATTTAATAAATATTTTAATAAAGAATTA
GACAGTATTTTTGATATTCTTTCATTTTTAGAAGAACTTAAAATTCATAAAGTTTATGGTAGAGGTAAAAGAAAAAGTAAGGAACAACTATTTCTTGAAA
AAGCACAATCCTATGCTGAAAGACTAAATAAATATACTAACTATTTAGAAATTTTAGGAGAAAGAAATAGCTTTTCAAAAACTGATAAAGAAGCAACTTT
TATGAGAATGAAAGAAGATTACATGCGCAATGGTCAATTAAAACCAGAATATAATCTTCAAATTGGTGTAATTAGTGAATATATCGCTTCCTATGAAATT
TTCCATAATCCAGCAGATACAAAAACTTTAATTCCATTTCTTGAAAAAATAAAATCTCAAAATATTGAAGTTAAAAATGTTGTAGCAGATGCTGGCTATG
AAAGTCTTTCTAATTATGAATATTTAAAAATTAATAATTATGTATCTTACATAAAACCAATATATTATGAAAAATCAAAAACTAGAAAATATAAGAAAGA
TTTAAATAAAGTGGAAAATTTAGAATATAATGAAGAAGAAAATAGACTATTTAGGAAAGATGGATTAGAACTAGAATTTTTGTATTATGGGAAAGATAAA
AAAACAATATATTTTAGAAACCCAGAAACAGAAAAGAAAGTCAGATATAACTATGAATTCAGAAAATTATCAAAAGATAATATAGAAAGTGAATTTGGAA
AGCAATTAAGAATGAATAGAAGTATTCAAGTAGAAGGAGCTTTTGCAGTAATAAAAGAAGATATGAAACTGCGCAAATTAAAAGTTAGAGGTAAAAATAG
TGTTAAAAGAGAAATAGCACTATTTTGTATAGCATATAATTCTAATAGATATATTTTTAAATTAAGCAAAAATAAAATAGGAACAGTATTGCACCCACTA
AAATCTGCTTAGTAAAAAAATAAAAAAGTAGACTTGTATTAAATTCGTCCAAAAATAAGAATAGAAATCAGAATAAAAAAAGATTTCTATTTTTTTTGTA
AAAATAAAAAAGCTGTTACAAGCTGATGATAAAAACCATCAATTTGCAACAGCCCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
2158 bp488 aa1462303+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MIKVINNNRYFKFFQPKLFYINQDIDNDDPVRFLSAILEEMDFSNLLQVFPNKTKVHPVNMFAVIIYAYSQGKYSTRDIEFLCKDSQRTKFLLNSANTPN
YSTISRFLSKANNIIYELFCQFVEKLLKLSEITTETIYIDGTKIEAYANKYSFVWKKSTLKYKERLEENILQLIDEFNKYFNKELDSIFDILSFLEELKI
HKVYGRGKRKSKEQLFLEKAQSYAERLNKYTNYLEILGERNSFSKTDKEATFMRMKEDYMRNGQLKPEYNLQIGVISEYIASYEIFHNPADTKTLIPFLE
KIKSQNIEVKNVVADAGYESLSNYEYLKINNYVSYIKPIYYEKSKTRKYKKDLNKVENLEYNEEENRLFRKDGLELEFLYYGKDKKTIYFRNPETEKKVR
YNYEFRKLSKDNIESEFGKQLRMNRSIQVEGAFAVIKEDMKLRKLKVRGKNSVKREIALFCIAYNSNRYIFKLSKNKIGTVLHPLKSA

 

Blast result :
Comments
ISFnu7 is 93% aa simialr to ISFnu1.
References
1] ISfinder annotation (2004)
2] Kapatral,V., Ivanova,N., Anderson,I., Reznik,G., Bhattacharyya,A., Gardner,W.L., Mikhailova,N., Lapidus,A., Larsen,N., D'Souza,M., Walunas,T., Haselkorn,R., Overbeek,R. and Kyrpides,N. (2003) Genome Res. 13 (6), 1180-1189