ISCc5

  • Family IS1182
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_002696 ND Caulobacter crescentus
Caulobacter crescentus CB15
DNA section
IS Length : 1577 bp

Ends


IR Length : 14/15

IRL : GAGGCTGTGTGAAAACACCCCCAAATCAGCTAGAATCCTGACGTCAGAGT
IRR : GAGGCTGTGTAAAAACCCGCTGACGGTCGCGGCCTGGCCAGACGGCGCGA

Insertion site


Left flankDirect repeatRight flankDR Length
GTCCGCTATGGGTGGTTTCCGGAC4

DNA sequence

GAGGCTGTGTGAAAACACCCCCAAATCAGCTAGAATCCTGACGTCAGAGTAGTAGCCAGGAGGTGGATTTGAGCCGCTTCGTTGAGGGTTGCGACCGACG
GCAGCCGACGCTGCTCCCCGAATGTCTGGACGACTATGTAGCCGAGGAGAACCCGGTGCGGGTGGTCGATGTCTTCGTCGACGACCTGGATCTTGGGACG
CTGGGCTTCGAGGGCCTCACACCGGCGGTGACGGGGCGCCCGGCCTATCATCCGGCCATGCTGCTGAAGCTCTACGTCTATGGCTACCTGAACAAGGTGC
AGTCCAGCCGCCGGTTGGAGCGCGAGGCGCGGCGCAATGTCGAGCTGATGTGGCTGACGGGCCGGCTGGCGCCCGACCACAAGACCATCGCCGACTTCCG
CAAGGACAATGGCCCGGCGATCCAGGCGGCCTGTGCCCAGTTCGTGGTGCTATGCCGGCAGATCGGCCTGTTCGGCGCGGCCCTGGTCGCCATCGACGGT
AGCAAGTTCAAGGCGGTCAACACCCGCGATAAGAACTTCACGGCCAACAAGCTCAAGAAGCGGCTGGAGCAGGTGGCCGAGCACATCGCCGGCTACCTGC
GCGACCTGGACACCGCTGACCGCCAGGAAGGCGAGGCCGCCGAGACGCGATCGGAACGCCTGAAGGAGAAGGTCGAGCGGCTGCGCGAGCAGATGCGATG
GCTCCAGACCATGGAAGCCAAGGTCGCGGCCTCGCCGGATGGCCAGGTCTCGCTGACCGATCCCGATGCCCGTTCGATGGCCACCACGGGGCGCGGCAGC
GGCATGGTCGGCTACAATGTCCAGTCCGCCGTCGAGACCGAGCATCACCTGATCGTCGCCCACGATGTCGTCATGACCGGCAGCGATCGCCAGCAGCTCT
CGTCCATGGCCGCCAGGACCAAAGACGCCCTGGGCGTCGAGACGCTCGATGTGCTGGCCGATCGGGGCTACTTCTCAGGCGAGGAGATCCTGGCCTGCGA
GGCCCTGGGCGTGACGCCCTACGTGCCCAGGCCCCTGACCTCCGGCGCCAAGGCCAACGGCCGGTTCGGCAAGCAGGACTTCGTCTATCTGCCCGAGCAA
GACGTCTACCGCTGCCCCTCGGGCGCGCTGCTGCCGCGCCACATGACCAATGTCGAGAACGGCATGACGCTGCACCGGTACTGGGATCACTTCAGTTGCC
AGAGCTGCGCGCTCAAGCCCCAGTGCACGCCGAGCATCGCGCGCCGGGTGACCCGTTGGGAGCACGAGGCGGTCATCGACGCCATGCAGCGACGGATGGA
CCTGACGCCCGGCGCCATGCGCCAGCGAAGGCGAACCGTCGAACACCCCTTCGGCACGATCAAGGCCTGGATGGGATCGACACACTTCCTGATGAAGCGC
CTTCCCAATGTGAAGACCGAGATCGGCCTCCACATCCTGGCCTACAACCTCAAGCGAGTGATCGCCATCCTGGGCGTGGGGCCGTTGATGAAGGCGATCC
AGGCCTGACGCCGACCTTGCCGCGCCCTCGCGCCGTCTGGCCAGGCCGCGACCGTCAGCGGGTTTTTACACAGCCTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1446 bp481 aa631508+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MDLSRFVEGCDRRQPTLLPECLDDYVAEENPVRVVDVFVDDLDLGTLGFEGLTPAVTGRPAYHPAMLLKLYVYGYLNKVQSSRRLEREARRNVELMWLTG
RLAPDHKTIADFRKDNGPAIQAACAQFVVLCRQIGLFGAALVAIDGSKFKAVNTRDKNFTANKLKKRLEQVAEHIAGYLRDLDTADRQEGEAAETRSERL
KEKVERLREQMRWLQTMEAKVAASPDGQVSLTDPDARSMATTGRGSGMVGYNVQSAVETEHHLIVAHDVVMTGSDRQQLSSMAARTKDALGVETLDVLAD
RGYFSGEEILACEALGVTPYVPRPLTSGAKANGRFGKQDFVYLPEQDVYRCPSGALLPRHMTNVENGMTLHRYWDHFSCQSCALKPQCTPSIARRVTRWE
HEAVIDAMQRRMDLTPGAMRQRRRTVEHPFGTIKAWMGSTHFLMKRLPNVKTEIGLHILAYNLKRVIAILGVGPLMKAIQA

 

Blast result :
Comments
ISCc5 is 58% aa similar to ISPsy6. There are two copies in Caulobacter crescentus CB15 genome at coordinates : cplt (1984723-1986299) and cplt (288013-289589).
References
1] Isfinder annotation (2005)
2] Nierman,W.C., Feldblyum,T.V., Paulsen,I.T., Nelson,K.E., Eisen,J., Heidelberg,J.F., Alley,M., Ohta,N., Maddock,J.R., Potocka,I., Nelson,W.C., Newton,A., Stephens,C., Phadke,Nd., Ely,B., Laub,M.T., DeBoy,R.T., Dodson,R.J., Durkin,A.S., Gwinn,M.L., Haft,D.H., Kolonay,J.F., Smit,J., Craven,M., Khouri,H., Shetty,J., Berry,K., Utterback,T., Tran,K., Wolf,A., Vamathevan,J., Ermolaeva,M., White,O., Salzberg,S.L., Shapiro,L., Venter,J.C. and Fraser,C.M. (2001) Proc. Natl. Acad. Sci. U.S.A. 98 (7), 4136-4141