ISPa7

  • Family IS1182
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AJ581665 ND Pseudomonas aeruginosa
Pseudomonas aeruginosa
DNA section
IS Length : 1669 bp

Ends


IR Length : 17

IRL : CAGACCGTGTAAAAACGTTGGCATCGTCCTTGCTGTGATTTGATGGATTC
IRR : CAGACCGTGTAAAAACGCAGCAAACGATGACCATCAACTTCCGGGGATTT

Insertion site


Left flankDirect repeatRight flankDR Length
GGCTGCTGCCGGCCATCAGCGGAC4

DNA sequence

CAGACCGTGTAAAAACGTTGGCATCGTCCTTGCTGTGATTTGATGGATTCAAAATCAGCGGGGGACGCCAATGAAGCGCTTTATCCAGGGAGAGCACCGA
GGGCAAAGCACACTGCTTCCCGAGAGCTTGGATGACTACGTGGCGGACACCAACCCGGTGCGGGTGGTCGATGTTTTCGTCGATGAACTCGACCTTGGCC
TACTGGGTTTCGAGGGTGTCGTCCCGGCGGAAACCGGCAGACCCGCCTACCATCCTGCTGACCTGCTGAAGATCTACATCTACGGTTACCTCAACCGTAT
CCAGTCCAGTCGACGTCTCGAACGCGAGAGTCAGCGCAACGTTGAGTTGATGTGGCTGACCGGACGTTTGATGCCGGACTTCAAGACCATCGCCAACTTC
CGCAAGGATAACGGCAAGGCAATCCGCGGCGTCTGTCGGCAGTTCGTGGTGCTGTGCCAGCAACTTGGCCTGTTCTCTGAAGCGCTGGTAGCCATTGATG
GCAGCAAGTTCAAGGCGGTCAACAACCGTGACCGCAATTTCACCAGCGCCAAGCTTCAGCGGCGAATGGAGGAGATCGAGTCCAGCATCAACCGTTACCT
GACCGCACTGGATACCGCTGATCGCCAGGAACCGGCCGTGGCGCAGGTCAAAGCCGAACGCCTCCACGACAAGATTGCGACCTTGAAAACTAAGCTGCGG
GAGCTCAAGGAAGTCGAGGTACAGCTCAACGAAACACCGGATAAACAGATCTCCCTGACCGATCCCGATGCCCGCTCAATGAAGACCCGGGGCAGCGGAA
TAGTCGGCTACAACGTGCAGGCGGCGGTCGACGCGAAGCACCACCTGATCGTGACCCACGAGGTCACGAACGACGGGGTCGATCGAGACCAACTGAGCTC
CATGGCCAAGCAAGCGCGAGAGGCCATGGGTGTCGAGGAACTCTCGGCGGTCGCAGACAGAGGGTATTTCAAAGGCGAAGAAATCCTGGCGTGCCATGAG
GCTGGAATCACCGTTTTCGTGCCCAAGACGCTGACCTCGGGAGCGACAGCGGCTGGTCGCTTCGGCAAAGGTGATTTCATCTATGACGCAGCCAAGAACG
AGTATCGATGCCCGGCTGGGCAAAGCCTGATCTGGCGGTTCTCAAGCGTCGAAAAAGGGCTGAAACTGCACCGCTACTGGAGTTCGCATTGCCAGGGTTG
TGCGTTGAAAGAGCACTGTACGCCTAGCTCAGAGCGCCGAGTGAGCCGATGGGAGCATGAGGCAGTGCTCGAAGCGATGCAGAGTCGCCTGGATCAAGCG
CCTGAAATGATGCGAATCCGCCGTCAGACGGTCGAGCACCCGTTCGGCACGCTGAAGAGCTGGATGGGCGCCACCCACTTCCTCACCAAGACTCTCGACC
GAGTGAGTACCGAGATGAGCCTGCATGTGCTCGCCTACAATCTCAAACGCGTGTTGAACGTGCTGGGCAGCGGTGCCCTGATGGCAGCGATGAAGGCCTG
AGGCCTGTTCTACGACTCGTACCGCCCTCCAGCAGGCGTACTGAAGCCGAAAGTGCCATAGCAACCAGAATTATCGATTGCGCCTGATTGGGCCTCCGAC
GGCCTCCTAGACGCTGAGAAAATCCCCGGAAGTTGATGGTCATCGTTTGCTGCGTTTTTACACGGTCTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1431 bp476 aa711501+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKRFIQGEHRGQSTLLPESLDDYVADTNPVRVVDVFVDELDLGLLGFEGVVPAETGRPAYHPADLLKIYIYGYLNRIQSSRRLERESQRNVELMWLTGRL
MPDFKTIANFRKDNGKAIRGVCRQFVVLCQQLGLFSEALVAIDGSKFKAVNNRDRNFTSAKLQRRMEEIESSINRYLTALDTADRQEPAVAQVKAERLHD
KIATLKTKLRELKEVEVQLNETPDKQISLTDPDARSMKTRGSGIVGYNVQAAVDAKHHLIVTHEVTNDGVDRDQLSSMAKQAREAMGVEELSAVADRGYF
KGEEILACHEAGITVFVPKTLTSGATAAGRFGKGDFIYDAAKNEYRCPAGQSLIWRFSSVEKGLKLHRYWSSHCQGCALKEHCTPSSERRVSRWEHEAVL
EAMQSRLDQAPEMMRIRRQTVEHPFGTLKSWMGATHFLTKTLDRVSTEMSLHVLAYNLKRVLNVLGSGALMAAMKA

 

Blast result :
Comments
ISPa7 is 60% aa similar to ISPsy6.
References
1] ISfinder annotation (2004)
2] Riccio,M.L., Pallecchi,L., Docquier,J.D., Cresti,S., Catania,M.R., Pagani,L., Lagatolla,C., Cornaglia,G., Fontana,R. and Rossolini,G.M. (2005) Antimicrob. Agents Chemother. 49 (1), 104-110