ISPa7
- Family IS1182
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AJ581665 | ND | Pseudomonas aeruginosa | Pseudomonas aeruginosa |
DNA section
IS Length : 1669 bp
Ends
IR Length : 17
IRL : CAGACCGTGTAAAAACGTTGGCATCGTCCTTGCTGTGATTTGATGGATTC
IRR : CAGACCGTGTAAAAACGCAGCAAACGATGACCATCAACTTCCGGGGATTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GGCTGCTGCC | GGCC | ATCAGCGGAC | 4 |
DNA sequence
CAGACCGTGTAAAAACGTTGGCATCGTCCTTGCTGTGATTTGATGGATTCAAAATCAGCGGGGGACGCCAATGAAGCGCTTTATCCAGGGAGAGCACCGA
GGGCAAAGCACACTGCTTCCCGAGAGCTTGGATGACTACGTGGCGGACACCAACCCGGTGCGGGTGGTCGATGTTTTCGTCGATGAACTCGACCTTGGCC
TACTGGGTTTCGAGGGTGTCGTCCCGGCGGAAACCGGCAGACCCGCCTACCATCCTGCTGACCTGCTGAAGATCTACATCTACGGTTACCTCAACCGTAT
CCAGTCCAGTCGACGTCTCGAACGCGAGAGTCAGCGCAACGTTGAGTTGATGTGGCTGACCGGACGTTTGATGCCGGACTTCAAGACCATCGCCAACTTC
CGCAAGGATAACGGCAAGGCAATCCGCGGCGTCTGTCGGCAGTTCGTGGTGCTGTGCCAGCAACTTGGCCTGTTCTCTGAAGCGCTGGTAGCCATTGATG
GCAGCAAGTTCAAGGCGGTCAACAACCGTGACCGCAATTTCACCAGCGCCAAGCTTCAGCGGCGAATGGAGGAGATCGAGTCCAGCATCAACCGTTACCT
GACCGCACTGGATACCGCTGATCGCCAGGAACCGGCCGTGGCGCAGGTCAAAGCCGAACGCCTCCACGACAAGATTGCGACCTTGAAAACTAAGCTGCGG
GAGCTCAAGGAAGTCGAGGTACAGCTCAACGAAACACCGGATAAACAGATCTCCCTGACCGATCCCGATGCCCGCTCAATGAAGACCCGGGGCAGCGGAA
TAGTCGGCTACAACGTGCAGGCGGCGGTCGACGCGAAGCACCACCTGATCGTGACCCACGAGGTCACGAACGACGGGGTCGATCGAGACCAACTGAGCTC
CATGGCCAAGCAAGCGCGAGAGGCCATGGGTGTCGAGGAACTCTCGGCGGTCGCAGACAGAGGGTATTTCAAAGGCGAAGAAATCCTGGCGTGCCATGAG
GCTGGAATCACCGTTTTCGTGCCCAAGACGCTGACCTCGGGAGCGACAGCGGCTGGTCGCTTCGGCAAAGGTGATTTCATCTATGACGCAGCCAAGAACG
AGTATCGATGCCCGGCTGGGCAAAGCCTGATCTGGCGGTTCTCAAGCGTCGAAAAAGGGCTGAAACTGCACCGCTACTGGAGTTCGCATTGCCAGGGTTG
TGCGTTGAAAGAGCACTGTACGCCTAGCTCAGAGCGCCGAGTGAGCCGATGGGAGCATGAGGCAGTGCTCGAAGCGATGCAGAGTCGCCTGGATCAAGCG
CCTGAAATGATGCGAATCCGCCGTCAGACGGTCGAGCACCCGTTCGGCACGCTGAAGAGCTGGATGGGCGCCACCCACTTCCTCACCAAGACTCTCGACC
GAGTGAGTACCGAGATGAGCCTGCATGTGCTCGCCTACAATCTCAAACGCGTGTTGAACGTGCTGGGCAGCGGTGCCCTGATGGCAGCGATGAAGGCCTG
AGGCCTGTTCTACGACTCGTACCGCCCTCCAGCAGGCGTACTGAAGCCGAAAGTGCCATAGCAACCAGAATTATCGATTGCGCCTGATTGGGCCTCCGAC
GGCCTCCTAGACGCTGAGAAAATCCCCGGAAGTTGATGGTCATCGTTTGCTGCGTTTTTACACGGTCTG
GGGCAAAGCACACTGCTTCCCGAGAGCTTGGATGACTACGTGGCGGACACCAACCCGGTGCGGGTGGTCGATGTTTTCGTCGATGAACTCGACCTTGGCC
TACTGGGTTTCGAGGGTGTCGTCCCGGCGGAAACCGGCAGACCCGCCTACCATCCTGCTGACCTGCTGAAGATCTACATCTACGGTTACCTCAACCGTAT
CCAGTCCAGTCGACGTCTCGAACGCGAGAGTCAGCGCAACGTTGAGTTGATGTGGCTGACCGGACGTTTGATGCCGGACTTCAAGACCATCGCCAACTTC
CGCAAGGATAACGGCAAGGCAATCCGCGGCGTCTGTCGGCAGTTCGTGGTGCTGTGCCAGCAACTTGGCCTGTTCTCTGAAGCGCTGGTAGCCATTGATG
GCAGCAAGTTCAAGGCGGTCAACAACCGTGACCGCAATTTCACCAGCGCCAAGCTTCAGCGGCGAATGGAGGAGATCGAGTCCAGCATCAACCGTTACCT
GACCGCACTGGATACCGCTGATCGCCAGGAACCGGCCGTGGCGCAGGTCAAAGCCGAACGCCTCCACGACAAGATTGCGACCTTGAAAACTAAGCTGCGG
GAGCTCAAGGAAGTCGAGGTACAGCTCAACGAAACACCGGATAAACAGATCTCCCTGACCGATCCCGATGCCCGCTCAATGAAGACCCGGGGCAGCGGAA
TAGTCGGCTACAACGTGCAGGCGGCGGTCGACGCGAAGCACCACCTGATCGTGACCCACGAGGTCACGAACGACGGGGTCGATCGAGACCAACTGAGCTC
CATGGCCAAGCAAGCGCGAGAGGCCATGGGTGTCGAGGAACTCTCGGCGGTCGCAGACAGAGGGTATTTCAAAGGCGAAGAAATCCTGGCGTGCCATGAG
GCTGGAATCACCGTTTTCGTGCCCAAGACGCTGACCTCGGGAGCGACAGCGGCTGGTCGCTTCGGCAAAGGTGATTTCATCTATGACGCAGCCAAGAACG
AGTATCGATGCCCGGCTGGGCAAAGCCTGATCTGGCGGTTCTCAAGCGTCGAAAAAGGGCTGAAACTGCACCGCTACTGGAGTTCGCATTGCCAGGGTTG
TGCGTTGAAAGAGCACTGTACGCCTAGCTCAGAGCGCCGAGTGAGCCGATGGGAGCATGAGGCAGTGCTCGAAGCGATGCAGAGTCGCCTGGATCAAGCG
CCTGAAATGATGCGAATCCGCCGTCAGACGGTCGAGCACCCGTTCGGCACGCTGAAGAGCTGGATGGGCGCCACCCACTTCCTCACCAAGACTCTCGACC
GAGTGAGTACCGAGATGAGCCTGCATGTGCTCGCCTACAATCTCAAACGCGTGTTGAACGTGCTGGGCAGCGGTGCCCTGATGGCAGCGATGAAGGCCTG
AGGCCTGTTCTACGACTCGTACCGCCCTCCAGCAGGCGTACTGAAGCCGAAAGTGCCATAGCAACCAGAATTATCGATTGCGCCTGATTGGGCCTCCGAC
GGCCTCCTAGACGCTGAGAAAATCCCCGGAAGTTGATGGTCATCGTTTGCTGCGTTTTTACACGGTCTG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1431 bp | 476 aa | 71 | 1501 | + | No |
Chemistry : DDE
ORF sequence :
MKRFIQGEHRGQSTLLPESLDDYVADTNPVRVVDVFVDELDLGLLGFEGVVPAETGRPAYHPADLLKIYIYGYLNRIQSSRRLERESQRNVELMWLTGRL
MPDFKTIANFRKDNGKAIRGVCRQFVVLCQQLGLFSEALVAIDGSKFKAVNNRDRNFTSAKLQRRMEEIESSINRYLTALDTADRQEPAVAQVKAERLHD
KIATLKTKLRELKEVEVQLNETPDKQISLTDPDARSMKTRGSGIVGYNVQAAVDAKHHLIVTHEVTNDGVDRDQLSSMAKQAREAMGVEELSAVADRGYF
KGEEILACHEAGITVFVPKTLTSGATAAGRFGKGDFIYDAAKNEYRCPAGQSLIWRFSSVEKGLKLHRYWSSHCQGCALKEHCTPSSERRVSRWEHEAVL
EAMQSRLDQAPEMMRIRRQTVEHPFGTLKSWMGATHFLTKTLDRVSTEMSLHVLAYNLKRVLNVLGSGALMAAMKA
MPDFKTIANFRKDNGKAIRGVCRQFVVLCQQLGLFSEALVAIDGSKFKAVNNRDRNFTSAKLQRRMEEIESSINRYLTALDTADRQEPAVAQVKAERLHD
KIATLKTKLRELKEVEVQLNETPDKQISLTDPDARSMKTRGSGIVGYNVQAAVDAKHHLIVTHEVTNDGVDRDQLSSMAKQAREAMGVEELSAVADRGYF
KGEEILACHEAGITVFVPKTLTSGATAAGRFGKGDFIYDAAKNEYRCPAGQSLIWRFSSVEKGLKLHRYWSSHCQGCALKEHCTPSSERRVSRWEHEAVL
EAMQSRLDQAPEMMRIRRQTVEHPFGTLKSWMGATHFLTKTLDRVSTEMSLHVLAYNLKRVLNVLGSGALMAAMKA
Blast result :
Comments
ISPa7 is 60% aa similar to ISPsy6.
References
1] ISfinder annotation (2004)
2] Riccio,M.L., Pallecchi,L., Docquier,J.D., Cresti,S., Catania,M.R., Pagani,L., Lagatolla,C., Cornaglia,G., Fontana,R. and Rossolini,G.M. (2005) Antimicrob. Agents Chemother. 49 (1), 104-110
2] Riccio,M.L., Pallecchi,L., Docquier,J.D., Cresti,S., Catania,M.R., Pagani,L., Lagatolla,C., Cornaglia,G., Fontana,R. and Rossolini,G.M. (2005) Antimicrob. Agents Chemother. 49 (1), 104-110