ISSau3
- Family IS1182
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_002952 | ND | Staphylococcus aureus | Staphylococcus aureus subsp. aureus MRSA252 Staphylococcus aureus subsp. aureus Mu50 Staphylococcus aureus subsp. aureus MW2 Staphylococcus aureus subsp. aureus MSSA476 Staphylococcus aureus subsp. aureus N315 |
DNA section
IS Length : 1946 bp
Ends
IR Length : 13/16
IRL : GAGTCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATATTTTCTAAT
IRR : GAGCTTGGGACATTAAGTTCTTAGGCAATGTAAAAAAGCTGATTTCTATT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
GAGTCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAA
TGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTTGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTT
ACTTTGAAATACTTTAAAAAAATAAGACACTTTCGTATAATTTAATAAATACCACTAAACTAAATTCACGAGGTGCCTTATGTATAAAAATTATAACATG
ACCCAACTTACACTACCAATAGAAACTTCTGTTAGAATTCCTCAAAATGATATTTCACGATATGTTAATGAAATTGTTGAAACGATACCTGATAGCGAAT
TCGATGAATTCAGACATCATCGTGGCGCAACATCCTATCATCCAAAAATGATGTTAAAAATTATCTTATATGCATACACTCAATCTGTATTTTCTGGTCG
TAGAATAGAGAAATTACTTCATGACAGTATTCGAATGATGTGGTTAGCTCAAAATCAAACACCTTCTTATAAAACTATTAATCGTTTTAGAGTAAATCCT
AATACTGATGCATTAATTGAATCTTTATTTATTCAGTTTCATAGTCAATGTTTAAAGCAAAATCTTATTGATGATAATTCAATTTTTATTGATGGTACAA
AAGTAGAAGCTAATGCCAATAGGTATACATTTGTGTGGAAGAAAAGTATTCAAAATCACGAATCGAAATTGAACGAAAATTCAAAAGCATTATATCGTGA
CTTAGTTGAAGAAAAAATAATACCAGAGATAAAAGAAGATGGAGATAGCGATTTAACAATAGAAGAAATAGATTTAATTGGTAGTCATTTAGATAAAGAA
ATCGAAGATTTAAATCATTCTATTCAGAACGAAGATTGTACTCAAATTAGAAAACAGACCCGTAAAAAAAGAACTGAGATTAAGAAGTTCAAAAAGAAAT
TTGATGATTATTCCGAAAGAAAAAGTAAATATGAAGAACAAAAATCGATTCTTAAAGATAGAAATAGCTTTTCTAAAACTGATCATGATGCAACTTTTAT
GAGAATGAAGGAAGACCATATGAAAAATGGCCAACTTAAGCCAGGATACAATTTACAAATAGCGACAAATTCTCAATTTGTTTTATCCTATGACCTATTT
CAAAACCCGACAGATACTAGAACTTTAATTCCATTTTTAACAATGATTCAAAATACCTTCGGTTATTTACCGGAGTATATTGTAGCTGATGCAGGTTATG
GTAGTGAGCAAAACTATATGGCTATTATAGATGATTTTAATAAAACGCCACTTATTACGTATGGTATGTTTATTAAAGATAAAACGAGAAAGTTTAAAAG
TGACATTTTTAACACTCAAAACTGGAAATATGACGAACTTAATGATGAATTTATATGTCCTAATAACAAAAGAATAGGTTTTAAAAGATATGCATACCGT
AATGATAGATATGGTTTTAAACGTGACTTCAAACTATATGAATGCGATGACTGTTCAGCATGTTCTTTGAGGCAACAATGCATGAAGCCAAATTCGAAAT
CCAATAAGAAAATCATGAAGAATTATAATTGGGAATACTTTAAAGCCCAAATTAATCAAAAGCTTTCTGAACCAGAAACGAAAAAAATCTATAGTCAAAG
AAAAATTGATGTAGAGCCTGTTTTTGGATTTATGAAGGCTATTTTGGGTTTCACTCGAATGTCAGTTCGAGGAATAAATAAAGTTAAACGAGAGCTAGGT
TTTGTATTAATGGCACTTAATATAAGGAAAATAGTAGCTCGACGAGCTGTATATTATCAAATACATTTAAAAAAAGCTGATTTCTATCAAATAATTAATA
GAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAAGCTC
TGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTTGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTT
ACTTTGAAATACTTTAAAAAAATAAGACACTTTCGTATAATTTAATAAATACCACTAAACTAAATTCACGAGGTGCCTTATGTATAAAAATTATAACATG
ACCCAACTTACACTACCAATAGAAACTTCTGTTAGAATTCCTCAAAATGATATTTCACGATATGTTAATGAAATTGTTGAAACGATACCTGATAGCGAAT
TCGATGAATTCAGACATCATCGTGGCGCAACATCCTATCATCCAAAAATGATGTTAAAAATTATCTTATATGCATACACTCAATCTGTATTTTCTGGTCG
TAGAATAGAGAAATTACTTCATGACAGTATTCGAATGATGTGGTTAGCTCAAAATCAAACACCTTCTTATAAAACTATTAATCGTTTTAGAGTAAATCCT
AATACTGATGCATTAATTGAATCTTTATTTATTCAGTTTCATAGTCAATGTTTAAAGCAAAATCTTATTGATGATAATTCAATTTTTATTGATGGTACAA
AAGTAGAAGCTAATGCCAATAGGTATACATTTGTGTGGAAGAAAAGTATTCAAAATCACGAATCGAAATTGAACGAAAATTCAAAAGCATTATATCGTGA
CTTAGTTGAAGAAAAAATAATACCAGAGATAAAAGAAGATGGAGATAGCGATTTAACAATAGAAGAAATAGATTTAATTGGTAGTCATTTAGATAAAGAA
ATCGAAGATTTAAATCATTCTATTCAGAACGAAGATTGTACTCAAATTAGAAAACAGACCCGTAAAAAAAGAACTGAGATTAAGAAGTTCAAAAAGAAAT
TTGATGATTATTCCGAAAGAAAAAGTAAATATGAAGAACAAAAATCGATTCTTAAAGATAGAAATAGCTTTTCTAAAACTGATCATGATGCAACTTTTAT
GAGAATGAAGGAAGACCATATGAAAAATGGCCAACTTAAGCCAGGATACAATTTACAAATAGCGACAAATTCTCAATTTGTTTTATCCTATGACCTATTT
CAAAACCCGACAGATACTAGAACTTTAATTCCATTTTTAACAATGATTCAAAATACCTTCGGTTATTTACCGGAGTATATTGTAGCTGATGCAGGTTATG
GTAGTGAGCAAAACTATATGGCTATTATAGATGATTTTAATAAAACGCCACTTATTACGTATGGTATGTTTATTAAAGATAAAACGAGAAAGTTTAAAAG
TGACATTTTTAACACTCAAAACTGGAAATATGACGAACTTAATGATGAATTTATATGTCCTAATAACAAAAGAATAGGTTTTAAAAGATATGCATACCGT
AATGATAGATATGGTTTTAAACGTGACTTCAAACTATATGAATGCGATGACTGTTCAGCATGTTCTTTGAGGCAACAATGCATGAAGCCAAATTCGAAAT
CCAATAAGAAAATCATGAAGAATTATAATTGGGAATACTTTAAAGCCCAAATTAATCAAAAGCTTTCTGAACCAGAAACGAAAAAAATCTATAGTCAAAG
AAAAATTGATGTAGAGCCTGTTTTTGGATTTATGAAGGCTATTTTGGGTTTCACTCGAATGTCAGTTCGAGGAATAAATAAAGTTAAACGAGAGCTAGGT
TTTGTATTAATGGCACTTAATATAAGGAAAATAGTAGCTCGACGAGCTGTATATTATCAAATACATTTAAAAAAAGCTGATTTCTATCAAATAATTAATA
GAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAAGCTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1647 bp | 548 aa | 280 | 1926 | + | No |
Chemistry : DDE
ORF sequence :
MYKNYNMTQLTLPIETSVRIPQNDISRYVNEIVETIPDSEFDEFRHHRGATSYHPKMMLKIILYAYTQSVFSGRRIEKLLHDSIRMMWLAQNQTPSYKTI
NRFRVNPNTDALIESLFIQFHSQCLKQNLIDDNSIFIDGTKVEANANRYTFVWKKSIQNHESKLNENSKALYRDLVEEKIIPEIKEDGDSDLTIEEIDLI
GSHLDKEIEDLNHSIQNEDCTQIRKQTRKKRTEIKKFKKKFDDYSERKSKYEEQKSILKDRNSFSKTDHDATFMRMKEDHMKNGQLKPGYNLQIATNSQF
VLSYDLFQNPTDTRTLIPFLTMIQNTFGYLPEYIVADAGYGSEQNYMAIIDDFNKTPLITYGMFIKDKTRKFKSDIFNTQNWKYDELNDEFICPNNKRIG
FKRYAYRNDRYGFKRDFKLYECDDCSACSLRQQCMKPNSKSNKKIMKNYNWEYFKAQINQKLSEPETKKIYSQRKIDVEPVFGFMKAILGFTRMSVRGIN
KVKRELGFVLMALNIRKIVARRAVYYQIHLKKADFYQIINRNQLFYIA
NRFRVNPNTDALIESLFIQFHSQCLKQNLIDDNSIFIDGTKVEANANRYTFVWKKSIQNHESKLNENSKALYRDLVEEKIIPEIKEDGDSDLTIEEIDLI
GSHLDKEIEDLNHSIQNEDCTQIRKQTRKKRTEIKKFKKKFDDYSERKSKYEEQKSILKDRNSFSKTDHDATFMRMKEDHMKNGQLKPGYNLQIATNSQF
VLSYDLFQNPTDTRTLIPFLTMIQNTFGYLPEYIVADAGYGSEQNYMAIIDDFNKTPLITYGMFIKDKTRKFKSDIFNTQNWKYDELNDEFICPNNKRIG
FKRYAYRNDRYGFKRDFKLYECDDCSACSLRQQCMKPNSKSNKKIMKNYNWEYFKAQINQKLSEPETKKIYSQRKIDVEPVFGFMKAILGFTRMSVRGIN
KVKRELGFVLMALNIRKIVARRAVYYQIHLKKADFYQIINRNQLFYIA
Blast result :
Comments
ISSau3 is 71% aa similar to IS663. There are 8 full and 11 truncated copies in Staphylococcus aureus subsp. aureus MRSA252 genome ; 6 partial copies in Staphylococcus aureus subsp. aureus MSSA476 ; 7 partial copies in Staphylococcus aureus subsp. aureus MW2 ; 5 partial copies in Staphylococcus aureus subsp. aureus Mu50 and 5 partial copies in Staphylococcus aureus subsp. aureus N315.
References
1] ISfinder annotation (2004)
2] Holden,M.T.G., Feil,E.J., Lindsay,J.A., Peacock,S.J., Day,N.P.J., Enright,M.C., Foster,T.J., Moore,C.E., Hurst,L., Atkin,R., Barron,A., Bason,N., Bentley,S.D., Chillingworth,C., Chillingworth,T., Churcher,C., Clark,L., Corton,C., Cronin,A., Doggett,J., Dowd,L., Feltwell,T., Hance,Z., Harris,B., Hauser,H., Holroyd,S., Jagels,K., James,K.D., Lennard,N., Line,A., Mayes,R., Moule,S., Mungall,K., Ormond,D., Quail,M.A., Rabbinowitsch,E., Rutherford,K., Sanders,M., Sharp,S., Simmonds,M., Stevens,K., Whitehead,S., Barrell,B.G., Spratt,B.G. and Parkhill,J.(2004)Proc. Natl. Acad. Sci. U.S.A. 101 (26), 9786-9791
2] Holden,M.T.G., Feil,E.J., Lindsay,J.A., Peacock,S.J., Day,N.P.J., Enright,M.C., Foster,T.J., Moore,C.E., Hurst,L., Atkin,R., Barron,A., Bason,N., Bentley,S.D., Chillingworth,C., Chillingworth,T., Churcher,C., Clark,L., Corton,C., Cronin,A., Doggett,J., Dowd,L., Feltwell,T., Hance,Z., Harris,B., Hauser,H., Holroyd,S., Jagels,K., James,K.D., Lennard,N., Line,A., Mayes,R., Moule,S., Mungall,K., Ormond,D., Quail,M.A., Rabbinowitsch,E., Rutherford,K., Sanders,M., Sharp,S., Simmonds,M., Stevens,K., Whitehead,S., Barrell,B.G., Spratt,B.G. and Parkhill,J.(2004)Proc. Natl. Acad. Sci. U.S.A. 101 (26), 9786-9791