ISSau3

  • Family IS1182
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_002952 ND Staphylococcus aureus
Staphylococcus aureus subsp. aureus MRSA252
Staphylococcus aureus subsp. aureus Mu50
Staphylococcus aureus subsp. aureus MW2
Staphylococcus aureus subsp. aureus MSSA476
Staphylococcus aureus subsp. aureus N315
DNA section
IS Length : 1946 bp

Ends


IR Length : 13/16

IRL : GAGTCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATATTTTCTAAT
IRR : GAGCTTGGGACATTAAGTTCTTAGGCAATGTAAAAAAGCTGATTTCTATT

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

GAGTCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAA
TGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTTGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTT
ACTTTGAAATACTTTAAAAAAATAAGACACTTTCGTATAATTTAATAAATACCACTAAACTAAATTCACGAGGTGCCTTATGTATAAAAATTATAACATG
ACCCAACTTACACTACCAATAGAAACTTCTGTTAGAATTCCTCAAAATGATATTTCACGATATGTTAATGAAATTGTTGAAACGATACCTGATAGCGAAT
TCGATGAATTCAGACATCATCGTGGCGCAACATCCTATCATCCAAAAATGATGTTAAAAATTATCTTATATGCATACACTCAATCTGTATTTTCTGGTCG
TAGAATAGAGAAATTACTTCATGACAGTATTCGAATGATGTGGTTAGCTCAAAATCAAACACCTTCTTATAAAACTATTAATCGTTTTAGAGTAAATCCT
AATACTGATGCATTAATTGAATCTTTATTTATTCAGTTTCATAGTCAATGTTTAAAGCAAAATCTTATTGATGATAATTCAATTTTTATTGATGGTACAA
AAGTAGAAGCTAATGCCAATAGGTATACATTTGTGTGGAAGAAAAGTATTCAAAATCACGAATCGAAATTGAACGAAAATTCAAAAGCATTATATCGTGA
CTTAGTTGAAGAAAAAATAATACCAGAGATAAAAGAAGATGGAGATAGCGATTTAACAATAGAAGAAATAGATTTAATTGGTAGTCATTTAGATAAAGAA
ATCGAAGATTTAAATCATTCTATTCAGAACGAAGATTGTACTCAAATTAGAAAACAGACCCGTAAAAAAAGAACTGAGATTAAGAAGTTCAAAAAGAAAT
TTGATGATTATTCCGAAAGAAAAAGTAAATATGAAGAACAAAAATCGATTCTTAAAGATAGAAATAGCTTTTCTAAAACTGATCATGATGCAACTTTTAT
GAGAATGAAGGAAGACCATATGAAAAATGGCCAACTTAAGCCAGGATACAATTTACAAATAGCGACAAATTCTCAATTTGTTTTATCCTATGACCTATTT
CAAAACCCGACAGATACTAGAACTTTAATTCCATTTTTAACAATGATTCAAAATACCTTCGGTTATTTACCGGAGTATATTGTAGCTGATGCAGGTTATG
GTAGTGAGCAAAACTATATGGCTATTATAGATGATTTTAATAAAACGCCACTTATTACGTATGGTATGTTTATTAAAGATAAAACGAGAAAGTTTAAAAG
TGACATTTTTAACACTCAAAACTGGAAATATGACGAACTTAATGATGAATTTATATGTCCTAATAACAAAAGAATAGGTTTTAAAAGATATGCATACCGT
AATGATAGATATGGTTTTAAACGTGACTTCAAACTATATGAATGCGATGACTGTTCAGCATGTTCTTTGAGGCAACAATGCATGAAGCCAAATTCGAAAT
CCAATAAGAAAATCATGAAGAATTATAATTGGGAATACTTTAAAGCCCAAATTAATCAAAAGCTTTCTGAACCAGAAACGAAAAAAATCTATAGTCAAAG
AAAAATTGATGTAGAGCCTGTTTTTGGATTTATGAAGGCTATTTTGGGTTTCACTCGAATGTCAGTTCGAGGAATAAATAAAGTTAAACGAGAGCTAGGT
TTTGTATTAATGGCACTTAATATAAGGAAAATAGTAGCTCGACGAGCTGTATATTATCAAATACATTTAAAAAAAGCTGATTTCTATCAAATAATTAATA
GAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAAGCTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1647 bp548 aa2801926+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MYKNYNMTQLTLPIETSVRIPQNDISRYVNEIVETIPDSEFDEFRHHRGATSYHPKMMLKIILYAYTQSVFSGRRIEKLLHDSIRMMWLAQNQTPSYKTI
NRFRVNPNTDALIESLFIQFHSQCLKQNLIDDNSIFIDGTKVEANANRYTFVWKKSIQNHESKLNENSKALYRDLVEEKIIPEIKEDGDSDLTIEEIDLI
GSHLDKEIEDLNHSIQNEDCTQIRKQTRKKRTEIKKFKKKFDDYSERKSKYEEQKSILKDRNSFSKTDHDATFMRMKEDHMKNGQLKPGYNLQIATNSQF
VLSYDLFQNPTDTRTLIPFLTMIQNTFGYLPEYIVADAGYGSEQNYMAIIDDFNKTPLITYGMFIKDKTRKFKSDIFNTQNWKYDELNDEFICPNNKRIG
FKRYAYRNDRYGFKRDFKLYECDDCSACSLRQQCMKPNSKSNKKIMKNYNWEYFKAQINQKLSEPETKKIYSQRKIDVEPVFGFMKAILGFTRMSVRGIN
KVKRELGFVLMALNIRKIVARRAVYYQIHLKKADFYQIINRNQLFYIA

 

Blast result :
Comments
ISSau3 is 71% aa similar to IS663. There are 8 full and 11 truncated copies in Staphylococcus aureus subsp. aureus MRSA252 genome ; 6 partial copies in Staphylococcus aureus subsp. aureus MSSA476 ; 7 partial copies in Staphylococcus aureus subsp. aureus MW2 ; 5 partial copies in Staphylococcus aureus subsp. aureus Mu50 and 5 partial copies in Staphylococcus aureus subsp. aureus N315.
References
1] ISfinder annotation (2004)
2] Holden,M.T.G., Feil,E.J., Lindsay,J.A., Peacock,S.J., Day,N.P.J., Enright,M.C., Foster,T.J., Moore,C.E., Hurst,L., Atkin,R., Barron,A., Bason,N., Bentley,S.D., Chillingworth,C., Chillingworth,T., Churcher,C., Clark,L., Corton,C., Cronin,A., Doggett,J., Dowd,L., Feltwell,T., Hance,Z., Harris,B., Hauser,H., Holroyd,S., Jagels,K., James,K.D., Lennard,N., Line,A., Mayes,R., Moule,S., Mungall,K., Ormond,D., Quail,M.A., Rabbinowitsch,E., Rutherford,K., Sanders,M., Sharp,S., Simmonds,M., Stevens,K., Whitehead,S., Barrell,B.G., Spratt,B.G. and Parkhill,J.(2004)Proc. Natl. Acad. Sci. U.S.A. 101 (26), 9786-9791