ISSpi6
- Family IS110
- Group IS1111
Isoform Synonym(s) ISSwp6
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_011566 | ND | Shewanella piezotolerans | Shewanella piezotolerans WP3 |
DNA section
IS Length : 1309 bp
Ends
IR Length : 12
IRL : TAATTAGATGGTCCGCCTCACCCCTAAGCTAACCTTAGGGTTAGGCAATC
IRR : ----TGTATGGTCCGCCTCGTTATTGCAAATGATATTTTCGATAACGAGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GTTGAAGGCT | TTTTTATGCACATAT | 0 | |
GCGTTGGCCC | TTTTTTATTGGGTTT | 0 |
DNA sequence
TAATTAGATGGTCCGCCTCACCCCTAAGCTAACCTTAGGGTTAGGCAATCAAAGAGGCGAACCATCATGTCTACTATTAAAGTAATTGGAATCGATTTAG
GCAAATCTTCTTTTCATCTTGTTGCTCATGACTATAGCGGTCGAGAGCTATTTCGAAAGCACCTTTCTCGTGCAAAGCTTATTGAGTTTCTATCTCAAAC
GCCTGCAACCGTCATCGCTATGGAGTCATGCGGTGGCTCACATTGGCTAGCTAGAAAGTGTCAATCTCTTGGGCACGAAGTTAAACTGATCCCCCCTCAG
TACGTTAAGCCTTACGTCAAAACCAATAAAAATGATTACATAGATGCCGATGCGATAGCTGAAGCGTCAACGCGCCCGTCGATGCGTTTTGTGGGTGTTA
AAACAGAATCATCCCAAGTTATCTCAGTGATTCAAAGGATCCGTTCAAGCTACGTTAAAGAGCGTACAGCGTGCATGTCGCGTATTGGCGCTATCTTGCT
TGAGTTTGGTATGAGCTTTCCTAAAGGGCATGCCAAAATGAAGGTGTTGTTTCAATGGCTTGCAGATAAAAAAGAGCCTATTCCTCCCATGTTAATGCAG
GAGCTAATTGAACATCACGAGTACTATTCACAGCTTAATAAGCGTATAGCAGGGCAAGATAAAAAACTGAAACAGCTTGTCGAGCAAAGCGAAGAGGCTC
AACAGCTTAAGTCAATCCCAGGTATAGGAGATCTAACGGCGAGTCAGTGCTTAGCTGATATTTCTGATGCAAATAACTTTAAGAACGGGCGACAGTTAGC
CGCATGGATAGGATTAGTCCCTCATCAATACTCAACAGGTGGTAAAACCACGTTATTGGGGATAAGTAAGCGAGGTAATAAAGCGTTAAGAACGCTGTTT
ATCCATGGCGCACGCTCCATATTATCGCGGCCAGAAGTTGCGGTTGCGGTGTTTGGTGAATGGATTTTAGAGCTCAGAGCAAGGAAGCCATTTAACGTAG
CCGTTGTTGCTTTGGCGAATAAGTTAGTGCGGATAGCATGGTCGGTATTATCGACCAAGCAAGCATTTGAAGTAAGAGTTTAAACCGAGTTTGCAGATGA
TAGAGAAGATGACAGAACGGTCAGACCACTAGATTGAAGACCTGACATAAAAAACAGCAACGCAGTATGCTTTGGGCTTTTTGAGGACAATCTAGCGCGG
AACTCATCGTGGAGCAGGTGGTAAGCACCTAATGAAGACTCCGAATACATTAGCGCAAACCAACCTCGTTATCGAAAATATCATTTGCAATAACGAGGCG
GACCATACA
GCAAATCTTCTTTTCATCTTGTTGCTCATGACTATAGCGGTCGAGAGCTATTTCGAAAGCACCTTTCTCGTGCAAAGCTTATTGAGTTTCTATCTCAAAC
GCCTGCAACCGTCATCGCTATGGAGTCATGCGGTGGCTCACATTGGCTAGCTAGAAAGTGTCAATCTCTTGGGCACGAAGTTAAACTGATCCCCCCTCAG
TACGTTAAGCCTTACGTCAAAACCAATAAAAATGATTACATAGATGCCGATGCGATAGCTGAAGCGTCAACGCGCCCGTCGATGCGTTTTGTGGGTGTTA
AAACAGAATCATCCCAAGTTATCTCAGTGATTCAAAGGATCCGTTCAAGCTACGTTAAAGAGCGTACAGCGTGCATGTCGCGTATTGGCGCTATCTTGCT
TGAGTTTGGTATGAGCTTTCCTAAAGGGCATGCCAAAATGAAGGTGTTGTTTCAATGGCTTGCAGATAAAAAAGAGCCTATTCCTCCCATGTTAATGCAG
GAGCTAATTGAACATCACGAGTACTATTCACAGCTTAATAAGCGTATAGCAGGGCAAGATAAAAAACTGAAACAGCTTGTCGAGCAAAGCGAAGAGGCTC
AACAGCTTAAGTCAATCCCAGGTATAGGAGATCTAACGGCGAGTCAGTGCTTAGCTGATATTTCTGATGCAAATAACTTTAAGAACGGGCGACAGTTAGC
CGCATGGATAGGATTAGTCCCTCATCAATACTCAACAGGTGGTAAAACCACGTTATTGGGGATAAGTAAGCGAGGTAATAAAGCGTTAAGAACGCTGTTT
ATCCATGGCGCACGCTCCATATTATCGCGGCCAGAAGTTGCGGTTGCGGTGTTTGGTGAATGGATTTTAGAGCTCAGAGCAAGGAAGCCATTTAACGTAG
CCGTTGTTGCTTTGGCGAATAAGTTAGTGCGGATAGCATGGTCGGTATTATCGACCAAGCAAGCATTTGAAGTAAGAGTTTAAACCGAGTTTGCAGATGA
TAGAGAAGATGACAGAACGGTCAGACCACTAGATTGAAGACCTGACATAAAAAACAGCAACGCAGTATGCTTTGGGCTTTTTGAGGACAATCTAGCGCGG
AACTCATCGTGGAGCAGGTGGTAAGCACCTAATGAAGACTCCGAATACATTAGCGCAAACCAACCTCGTTATCGAAAATATCATTTGCAATAACGAGGCG
GACCATACA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1017 bp | 338 aa | 67 | 1083 | + | No |
Chemistry : DEDD
ORF sequence :
MSTIKVIGIDLGKSSFHLVAHDYSGRELFRKHLSRAKLIEFLSQTPATVIAMESCGGSHWLARKCQSLGHEVKLIPPQYVKPYVKTNKNDYIDADAIAEA
STRPSMRFVGVKTESSQVISVIQRIRSSYVKERTACMSRIGAILLEFGMSFPKGHAKMKVLFQWLADKKEPIPPMLMQELIEHHEYYSQLNKRIAGQDKK
LKQLVEQSEEAQQLKSIPGIGDLTASQCLADISDANNFKNGRQLAAWIGLVPHQYSTGGKTTLLGISKRGNKALRTLFIHGARSILSRPEVAVAVFGEWI
LELRARKPFNVAVVALANKLVRIAWSVLSTKQAFEVRV
STRPSMRFVGVKTESSQVISVIQRIRSSYVKERTACMSRIGAILLEFGMSFPKGHAKMKVLFQWLADKKEPIPPMLMQELIEHHEYYSQLNKRIAGQDKK
LKQLVEQSEEAQQLKSIPGIGDLTASQCLADISDANNFKNGRQLAAWIGLVPHQYSTGGKTTLLGISKRGNKALRTLFIHGARSILSRPEVAVAVFGEWI
LELRARKPFNVAVVALANKLVRIAWSVLSTKQAFEVRV
Blast result :
Comments
There are 2 copies of ISSpi6 encoded in Shewanella piezotolerans. The transposase encoded by ISSpi6 has 63% identity to that encoded by ISVpa1.
References
1] Romine, M. (2009) Direct submission.
2] Wang,F., Wang,J., Jian,H., Zhang,B., Li,S., Wang,F., Zeng,X., Gao,L., Bartlett,D.H., Yu,J., Hu,S. and Xiao,X. (2008) PLoS ONE 3 (4), E1937
2] Wang,F., Wang,J., Jian,H., Zhang,B., Li,S., Wang,F., Zeng,X., Gao,L., Bartlett,D.H., Yu,J., Hu,S. and Xiao,X. (2008) PLoS ONE 3 (4), E1937