ISSpi6

  • Family IS110
  • Group IS1111
MGE type ISRelated element(s) :
Isoform Synonym(s) ISSwp6
Accession numberTranspositionOriginHost
NC_011566 ND Shewanella piezotolerans
Shewanella piezotolerans WP3
DNA section
IS Length : 1309 bp

Ends


IR Length : 12

IRL : TAATTAGATGGTCCGCCTCACCCCTAAGCTAACCTTAGGGTTAGGCAATC
IRR : ----TGTATGGTCCGCCTCGTTATTGCAAATGATATTTTCGATAACGAGG

Insertion site


Left flankDirect repeatRight flankDR Length
GTTGAAGGCTTTTTTATGCACATAT0
GCGTTGGCCCTTTTTTATTGGGTTT0

DNA sequence

TAATTAGATGGTCCGCCTCACCCCTAAGCTAACCTTAGGGTTAGGCAATCAAAGAGGCGAACCATCATGTCTACTATTAAAGTAATTGGAATCGATTTAG
GCAAATCTTCTTTTCATCTTGTTGCTCATGACTATAGCGGTCGAGAGCTATTTCGAAAGCACCTTTCTCGTGCAAAGCTTATTGAGTTTCTATCTCAAAC
GCCTGCAACCGTCATCGCTATGGAGTCATGCGGTGGCTCACATTGGCTAGCTAGAAAGTGTCAATCTCTTGGGCACGAAGTTAAACTGATCCCCCCTCAG
TACGTTAAGCCTTACGTCAAAACCAATAAAAATGATTACATAGATGCCGATGCGATAGCTGAAGCGTCAACGCGCCCGTCGATGCGTTTTGTGGGTGTTA
AAACAGAATCATCCCAAGTTATCTCAGTGATTCAAAGGATCCGTTCAAGCTACGTTAAAGAGCGTACAGCGTGCATGTCGCGTATTGGCGCTATCTTGCT
TGAGTTTGGTATGAGCTTTCCTAAAGGGCATGCCAAAATGAAGGTGTTGTTTCAATGGCTTGCAGATAAAAAAGAGCCTATTCCTCCCATGTTAATGCAG
GAGCTAATTGAACATCACGAGTACTATTCACAGCTTAATAAGCGTATAGCAGGGCAAGATAAAAAACTGAAACAGCTTGTCGAGCAAAGCGAAGAGGCTC
AACAGCTTAAGTCAATCCCAGGTATAGGAGATCTAACGGCGAGTCAGTGCTTAGCTGATATTTCTGATGCAAATAACTTTAAGAACGGGCGACAGTTAGC
CGCATGGATAGGATTAGTCCCTCATCAATACTCAACAGGTGGTAAAACCACGTTATTGGGGATAAGTAAGCGAGGTAATAAAGCGTTAAGAACGCTGTTT
ATCCATGGCGCACGCTCCATATTATCGCGGCCAGAAGTTGCGGTTGCGGTGTTTGGTGAATGGATTTTAGAGCTCAGAGCAAGGAAGCCATTTAACGTAG
CCGTTGTTGCTTTGGCGAATAAGTTAGTGCGGATAGCATGGTCGGTATTATCGACCAAGCAAGCATTTGAAGTAAGAGTTTAAACCGAGTTTGCAGATGA
TAGAGAAGATGACAGAACGGTCAGACCACTAGATTGAAGACCTGACATAAAAAACAGCAACGCAGTATGCTTTGGGCTTTTTGAGGACAATCTAGCGCGG
AACTCATCGTGGAGCAGGTGGTAAGCACCTAATGAAGACTCCGAATACATTAGCGCAAACCAACCTCGTTATCGAAAATATCATTTGCAATAACGAGGCG
GACCATACA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1017 bp338 aa671083+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MSTIKVIGIDLGKSSFHLVAHDYSGRELFRKHLSRAKLIEFLSQTPATVIAMESCGGSHWLARKCQSLGHEVKLIPPQYVKPYVKTNKNDYIDADAIAEA
STRPSMRFVGVKTESSQVISVIQRIRSSYVKERTACMSRIGAILLEFGMSFPKGHAKMKVLFQWLADKKEPIPPMLMQELIEHHEYYSQLNKRIAGQDKK
LKQLVEQSEEAQQLKSIPGIGDLTASQCLADISDANNFKNGRQLAAWIGLVPHQYSTGGKTTLLGISKRGNKALRTLFIHGARSILSRPEVAVAVFGEWI
LELRARKPFNVAVVALANKLVRIAWSVLSTKQAFEVRV

 

Blast result :
Comments
There are 2 copies of ISSpi6 encoded in Shewanella piezotolerans. The transposase encoded by ISSpi6 has 63% identity to that encoded by ISVpa1.
References
1] Romine, M. (2009) Direct submission.
2] Wang,F., Wang,J., Jian,H., Zhang,B., Li,S., Wang,F., Zeng,X., Gao,L., Bartlett,D.H., Yu,J., Hu,S. and Xiao,X. (2008) PLoS ONE 3 (4), E1937