ISSpi5
- Family IS110
- Group
Isoform Synonym(s) ISSwp5
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_011566 | ND | Shewanella piezotolerans | Shewanella piezotolerans WP3 |
DNA section
IS Length : 1212 bp
Ends
Left end : CTTGTATGGATAATAAACCCACCTAATTACACTTAATTCCCAGTTTCGGGTAATGTGAGACCCAGGCTTTAGCTGCAACTAAAGCTTTCATTTGTCGTAG
Right end : AGAAAGATGGTTGTGATCCTAAATTCGATGCTAAGAGATGGTGTTTTGTGGGAAGCGCCAAAAGCTTAAAACTAGCTATTGACGCCATAGTCTCTTGTTA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GCCTATTAAC | GATGATAT | 0 | |
GCTTGAGTGG | GTTGCCGA | 0 | |
CCATAAATGG | GTCAGTAA | 0 | |
CTTTAATGTG | AAATGCTG | 0 | |
ACTTTATTGG | GCTGCCAG | 0 |
DNA sequence
CTTGTATGGATAATAAACCCACCTAATTACACTTAATTCCCAGTTTCGGGTAATGTGAGACCCAGGCTTTAGCTGCAACTAAAGCTTTCATTTGTCGTAG
TTCGATTGAATGATGGATCCTCTATCGAGAGACCGATAACAAGAAAGAACGCGACAAACGACTCCAAGCAAAATACTCGAATAGTCTACTGGGTCTCGAA
CCCGCATTTGCAAGCAAGAGTTAGCTTATTATGAAATCAAAAACTAATCAAAACATTAACGTTGGTGTCGATACTGGTAAGTACCAACTCGACATTTATA
TTCGACCACTAGATATCTATTTCACCGTTTCTAACGATGAAAAAGGGATTAAAGAAGCAGTGCGCCTCATTAAAAAGTACCATCCTGAGCGTATTGTCAT
TGAAGCGACAGGACGTCTTGAGATGCCCTTTATCATGGCTTGTGCTAACGCCAATTTACCCTTCGTGATAGCCAATCCGGTTCACATTAAACGCTTTGCT
GGAGCAATAGGCCAACGCGCTAAAACAGATAAGCTAGACGCACAGCTGATAGCTCATTACAGTGAAGCGATTAAACCTAGGCTATCAACGCTAAAGCCTG
ATGTCATGCAGGCTATGAGCGATCTCGTAGGAAGGCGGAGCCAGCTTTTGGTCATGCAAACGATGGAAAAGAATCGGCTTCAAATTCTCCCTCAAGAGCT
TGCAATGACGATCAAGCCAATCTTAACGGTCTTCAAAAATCAGATAACGAAGATAGAAGATAAAATCGTTAAACTCATCGAATCGAACGCTGACTATCAA
GCTAAAAACCTTATCCTGCAAAGCATGAAAGGAATAGGTAAAATTGCCGCAGCATCCATTATCAGTAACCTACCAGAGCTTGGCTATATTAATAACAAAG
AAGCCAGTTCGTTGGTTGGTGTAGCACCGATGAATAAAGAAAGTGGACGCTTTAAAGGCCATAGAAAAATCCAGGGAGGGCGACATCAAGTTAGAACCGT
TTTGTACATGGCAATGATGTCAGCAATACAATCCAACCCCGTTTTTAAAGAGACTTATCAGCGACTCGTTGCCGCAGGAAAACCTAAGAAAGTCGCGATT
ATTGCATGCGTAAGAAAGATGGTTGTGATCCTAAATTCGATGCTAAGAGATGGTGTTTTGTGGGAAGCGCCAAAAGCTTAAAACTAGCTATTGACGCCAT
AGTCTCTTGTTA
TTCGATTGAATGATGGATCCTCTATCGAGAGACCGATAACAAGAAAGAACGCGACAAACGACTCCAAGCAAAATACTCGAATAGTCTACTGGGTCTCGAA
CCCGCATTTGCAAGCAAGAGTTAGCTTATTATGAAATCAAAAACTAATCAAAACATTAACGTTGGTGTCGATACTGGTAAGTACCAACTCGACATTTATA
TTCGACCACTAGATATCTATTTCACCGTTTCTAACGATGAAAAAGGGATTAAAGAAGCAGTGCGCCTCATTAAAAAGTACCATCCTGAGCGTATTGTCAT
TGAAGCGACAGGACGTCTTGAGATGCCCTTTATCATGGCTTGTGCTAACGCCAATTTACCCTTCGTGATAGCCAATCCGGTTCACATTAAACGCTTTGCT
GGAGCAATAGGCCAACGCGCTAAAACAGATAAGCTAGACGCACAGCTGATAGCTCATTACAGTGAAGCGATTAAACCTAGGCTATCAACGCTAAAGCCTG
ATGTCATGCAGGCTATGAGCGATCTCGTAGGAAGGCGGAGCCAGCTTTTGGTCATGCAAACGATGGAAAAGAATCGGCTTCAAATTCTCCCTCAAGAGCT
TGCAATGACGATCAAGCCAATCTTAACGGTCTTCAAAAATCAGATAACGAAGATAGAAGATAAAATCGTTAAACTCATCGAATCGAACGCTGACTATCAA
GCTAAAAACCTTATCCTGCAAAGCATGAAAGGAATAGGTAAAATTGCCGCAGCATCCATTATCAGTAACCTACCAGAGCTTGGCTATATTAATAACAAAG
AAGCCAGTTCGTTGGTTGGTGTAGCACCGATGAATAAAGAAAGTGGACGCTTTAAAGGCCATAGAAAAATCCAGGGAGGGCGACATCAAGTTAGAACCGT
TTTGTACATGGCAATGATGTCAGCAATACAATCCAACCCCGTTTTTAAAGAGACTTATCAGCGACTCGTTGCCGCAGGAAAACCTAAGAAAGTCGCGATT
ATTGCATGCGTAAGAAAGATGGTTGTGATCCTAAATTCGATGCTAAGAGATGGTGTTTTGTGGGAAGCGCCAAAAGCTTAAAACTAGCTATTGACGCCAT
AGTCTCTTGTTA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
951 bp | 316 aa | 231 | 1181 | + | No |
Chemistry : DEDD
ORF sequence :
MKSKTNQNINVGVDTGKYQLDIYIRPLDIYFTVSNDEKGIKEAVRLIKKYHPERIVIEATGRLEMPFIMACANANLPFVIANPVHIKRFAGAIGQRAKTD
KLDAQLIAHYSEAIKPRLSTLKPDVMQAMSDLVGRRSQLLVMQTMEKNRLQILPQELAMTIKPILTVFKNQITKIEDKIVKLIESNADYQAKNLILQSMK
GIGKIAAASIISNLPELGYINNKEASSLVGVAPMNKESGRFKGHRKIQGGRHQVRTVLYMAMMSAIQSNPVFKETYQRLVAAGKPKKVAIIACVRKMVVI
LNSMLRDGVLWEAPKA
KLDAQLIAHYSEAIKPRLSTLKPDVMQAMSDLVGRRSQLLVMQTMEKNRLQILPQELAMTIKPILTVFKNQITKIEDKIVKLIESNADYQAKNLILQSMK
GIGKIAAASIISNLPELGYINNKEASSLVGVAPMNKESGRFKGHRKIQGGRHQVRTVLYMAMMSAIQSNPVFKETYQRLVAAGKPKKVAIIACVRKMVVI
LNSMLRDGVLWEAPKA
Blast result :
Comments
There are 5 copies of ISSpi5 encoded in Shewanella piezotolerans. The transposase encoded by ISSpi5 has 86% identity to that encoded by IS492.
References
1]Romine, M. (2009) Direct submission.
2] Wang,F., Wang,J., Jian,H., Zhang,B., Li,S., Wang,F., Zeng,X., Gao,L., Bartlett,D.H., Yu,J., Hu,S. and Xiao,X. (2008) PLoS ONE 3 (4), E19371
2] Wang,F., Wang,J., Jian,H., Zhang,B., Li,S., Wang,F., Zeng,X., Gao,L., Bartlett,D.H., Yu,J., Hu,S. and Xiao,X. (2008) PLoS ONE 3 (4), E19371