ISSpi5

  • Family IS110
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s) ISSwp5
Accession numberTranspositionOriginHost
NC_011566 ND Shewanella piezotolerans
Shewanella piezotolerans WP3
DNA section
IS Length : 1212 bp

Ends


Left end : CTTGTATGGATAATAAACCCACCTAATTACACTTAATTCCCAGTTTCGGGTAATGTGAGACCCAGGCTTTAGCTGCAACTAAAGCTTTCATTTGTCGTAG
Right end : AGAAAGATGGTTGTGATCCTAAATTCGATGCTAAGAGATGGTGTTTTGTGGGAAGCGCCAAAAGCTTAAAACTAGCTATTGACGCCATAGTCTCTTGTTA

Insertion site


Left flankDirect repeatRight flankDR Length
GCCTATTAACGATGATAT0
GCTTGAGTGGGTTGCCGA0
CCATAAATGGGTCAGTAA0
CTTTAATGTGAAATGCTG0
ACTTTATTGGGCTGCCAG0

DNA sequence

CTTGTATGGATAATAAACCCACCTAATTACACTTAATTCCCAGTTTCGGGTAATGTGAGACCCAGGCTTTAGCTGCAACTAAAGCTTTCATTTGTCGTAG
TTCGATTGAATGATGGATCCTCTATCGAGAGACCGATAACAAGAAAGAACGCGACAAACGACTCCAAGCAAAATACTCGAATAGTCTACTGGGTCTCGAA
CCCGCATTTGCAAGCAAGAGTTAGCTTATTATGAAATCAAAAACTAATCAAAACATTAACGTTGGTGTCGATACTGGTAAGTACCAACTCGACATTTATA
TTCGACCACTAGATATCTATTTCACCGTTTCTAACGATGAAAAAGGGATTAAAGAAGCAGTGCGCCTCATTAAAAAGTACCATCCTGAGCGTATTGTCAT
TGAAGCGACAGGACGTCTTGAGATGCCCTTTATCATGGCTTGTGCTAACGCCAATTTACCCTTCGTGATAGCCAATCCGGTTCACATTAAACGCTTTGCT
GGAGCAATAGGCCAACGCGCTAAAACAGATAAGCTAGACGCACAGCTGATAGCTCATTACAGTGAAGCGATTAAACCTAGGCTATCAACGCTAAAGCCTG
ATGTCATGCAGGCTATGAGCGATCTCGTAGGAAGGCGGAGCCAGCTTTTGGTCATGCAAACGATGGAAAAGAATCGGCTTCAAATTCTCCCTCAAGAGCT
TGCAATGACGATCAAGCCAATCTTAACGGTCTTCAAAAATCAGATAACGAAGATAGAAGATAAAATCGTTAAACTCATCGAATCGAACGCTGACTATCAA
GCTAAAAACCTTATCCTGCAAAGCATGAAAGGAATAGGTAAAATTGCCGCAGCATCCATTATCAGTAACCTACCAGAGCTTGGCTATATTAATAACAAAG
AAGCCAGTTCGTTGGTTGGTGTAGCACCGATGAATAAAGAAAGTGGACGCTTTAAAGGCCATAGAAAAATCCAGGGAGGGCGACATCAAGTTAGAACCGT
TTTGTACATGGCAATGATGTCAGCAATACAATCCAACCCCGTTTTTAAAGAGACTTATCAGCGACTCGTTGCCGCAGGAAAACCTAAGAAAGTCGCGATT
ATTGCATGCGTAAGAAAGATGGTTGTGATCCTAAATTCGATGCTAAGAGATGGTGTTTTGTGGGAAGCGCCAAAAGCTTAAAACTAGCTATTGACGCCAT
AGTCTCTTGTTA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
951 bp316 aa2311181+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MKSKTNQNINVGVDTGKYQLDIYIRPLDIYFTVSNDEKGIKEAVRLIKKYHPERIVIEATGRLEMPFIMACANANLPFVIANPVHIKRFAGAIGQRAKTD
KLDAQLIAHYSEAIKPRLSTLKPDVMQAMSDLVGRRSQLLVMQTMEKNRLQILPQELAMTIKPILTVFKNQITKIEDKIVKLIESNADYQAKNLILQSMK
GIGKIAAASIISNLPELGYINNKEASSLVGVAPMNKESGRFKGHRKIQGGRHQVRTVLYMAMMSAIQSNPVFKETYQRLVAAGKPKKVAIIACVRKMVVI
LNSMLRDGVLWEAPKA

 

Blast result :
Comments
There are 5 copies of ISSpi5 encoded in Shewanella piezotolerans. The transposase encoded by ISSpi5 has 86% identity to that encoded by IS492.
References
1]Romine, M. (2009) Direct submission.
2] Wang,F., Wang,J., Jian,H., Zhang,B., Li,S., Wang,F., Zeng,X., Gao,L., Bartlett,D.H., Yu,J., Hu,S. and Xiao,X. (2008) PLoS ONE 3 (4), E19371