ISMex25

  • Family IS6
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
Y Methylobacterium extorquens
Methylobacterium extorquens AM1
DNA section
IS Length : 887 bp

Ends


IR Length : 13/15

IRL : GGCCCTGTCGCAAACCCGTGGCGTTTACCCCGCGTTGACCATAGAGCCCG
IRR : GGGCCTGTCGCGAACTCAGTGTCAGGCCGCGGAAGGCTCTCTACCGTTCT

Insertion site


Left flankDirect repeatRight flankDR Length
GGCTTCGTGACTTCGACACG0
GCTTCGCCGACCTGCTCGCGCCACTTCT8
CGTCGGGCCGTCGGCGACAGCTTGCGGT8
AGCACGACGATTTCCTCGTCGATCAGGA8
GGCAACGGGACGTTTTCTTGCCACGGTC8
TTGACCCAGGCGTGTTCCACCAGGCCGC8
ACTTCTCCCATATGAATTTCGTGTAGTG8
GGCAACGGGACGTTTTCTTGCCACGGTC8

DNA sequence

GGCCCTGTCGCAAACCCGTGGCGTTTACCCCGCGTTGACCATAGAGCCCGCATGGCACCTCCTGTTTCGGAGGCCACCCCATGATCCTGTCCGCCATAGC
CGCGAAGCTGAAGCAGCGCTCCAAAGCCGATTTCAAGGGCCGGCACTACGAGGCGGCCCTGATCGTTCAGGCCGTCGCCTGGTACCTGCGTTACCCGCTG
AGCTATCGTGACATCGAGGAGCTGTTCCTGGAGCGCGGGGTCGAGGTGGACCACAGCACCCTGAACCGTTGGGTGCTCGCCTACGCGCCGTTGATCGAGA
AGCGGCTGCGCCAATTTCGCAAGCCGCACTGCGGGTCGATCCGGATCGATGAGACCTACATCAAGGTGCGTGGTGAGTGGCGCTACCTCTACCGAGCTGT
CGACAAGCACGGCAACCCAGTCGACTTCCTCCTCACCGCTAACCGCGATCTCGACGCGGCCAAGCGGTTCTTCCGTAAGATGCTGGCGGATCAGCCACTT
CTTGCGCCCGATCGGATCGGCACGGATGGTGCCAGCACCTATCCACCCGCGATCGTGGCTGCGAAGAGCGATAGTCTTCTGCCCCACGCGCCGCTCCACT
ACGTCACCAAACATCTGCAGCAAGGCATCGAGAGCGACCACTTCCGGGTCAAGAAGAACATGCCCCGGATCGGCGGCTTCCGCTCCTTCCATACAGCGCG
ACGCACGATCTGCGGCTTCGAGGCCATGCTCTGGCTGCGGAAGGGCTTCGGTTTCGCCGGCGCGTGGACGGTCCGCGAGCAGAACCGTCTTCTCGCACTC
TGCTTTGGGCTTCCGCAGGCGAACAAAGCGTGAAAGCAGAACGGTAGAGAGCCTTCCGCGGCCTGACACTGAGTTCGCGACAGGCCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
753 bp250 aa81833+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MILSAIAAKLKQRSKADFKGRHYEAALIVQAVAWYLRYPLSYRDIEELFLERGVEVDHSTLNRWVLAYAPLIEKRLRQFRKPHCGSIRIDETYIKVRGEW
RYLYRAVDKHGNPVDFLLTANRDLDAAKRFFRKMLADQPLLAPDRIGTDGASTYPPAIVAAKSDSLLPHAPLHYVTKHLQQGIESDHFRVKKNMPRIGGF
RSFHTARRTICGFEAMLWLRKGFGFAGAWTVREQNRLLALCFGLPQANKA

 

Blast result :
Comments
There are one intact and one partial ISMex25 on one of the three native plasmids in AM1 genome. ISMex25 was found transposing into an introduced plasmid in several independently evolved Methylobacterium populations.
ISMex25 is 90% aa similar to ISMtsp1.
References