ISSysp3

  • Family IS4
  • Group IS50
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_010474 ND Synechococcus sp.
Synechococcus sp. PCC 7002
Synechococcus sp. PCC 7002 plasmid pAQ7
DNA section
IS Length : 1485 bp

Ends


IR Length : 19

IRL : CTACTGTGTACACACAAGTAGGGTGAACTAAAATGGAGGAGTCGAGAGGC
IRR : CTACTGTGTACACACAAGTGTGGATTGAGCGAGCTTCCATCCATGGAAGA

Insertion site


Left flankDirect repeatRight flankDR Length
GACATAATCTCCCTCTAAATAGATGTGAAC10
CTCTAACTCCCCTTAAAGGGGAGAATGTTTT11
GTGCCATTCTCCCCTTAAGGGGAGTTAGAG10
AGGGTGTTCTCCCCTGGAGGGGAGCTAGAG10

DNA sequence

CTACTGTGTACACACAAGTAGGGTGAACTAAAATGGAGGAGTCGAGAGGCAGGAAATTCCAATGGATAATCCAATCCTGATTCACGCTACACAAATGAGC
GGCAGCTCCTTTGGCGACCCTCGCCTAGAAAAAAGGGGGCGGCATTGTATGAAGCGATGCAAGACCATCAATCAGTAAATATCCGCGCCCTGAGCCGAAA
TCGAGCAGAACAAGTGGGGTACTATCGTTTCCTTGACAACGACAATGTCAGCCTATGTGAGTTGATACAGAGCGTGTCTGACGCCTGCCAACAACAAGTG
GGAGGACTCCACGTCCTGGCCATTAGTGATAGCAGTGAGGTTAACCTACAAGCCCATGTAGGACGAATCAACCCAGAAGGATTAGGAGTGGTAGGCAATA
ACCAAGATGTCGGCTTTTTTATTCACCCGACTTTAATCGTGAACGCCGAAACAGGGTTTCCCCTAGGTCTCAGTAATATCCAAATATGGAGCCGAAAAGC
AGTTCGTCCCAATAAGCATCAACGACGTTACCTAAAGCTACCGATTGAAGAGAAAGAATCCTACAAATGGCTACTGTCTGCCGAAGCATCTGAGCCCTGT
CTGAAAAACGGGGGAGTGAAACAAGTAACCCATGTGGGCGACCGCGAAAATGACATATATCAAGAATGGGTGCGAGTTCCCAATGACCAAACCCATGTTT
TAGTGAGAGCTTGTCGGGACCGTCGCCTCTGGGATGAGCAGCAATCCCTGTATGAATACTTAAGCGCACAGCACTGCGAAGGGACTTATTCGGTGCAGGT
AGTGGCAGATTCTCGATTGGGACGTACTGCCCGCGAAGCTTGGTTAGCGGTACGGATGACTCCAGTTCAGATTCAACGGCCAGATACAGTGGAAGCTCAG
GATTATCCCGAGAAGGTACAGCTGTATGCCGTAGAAGCAAAGGAAGTCAATCCTCCCGTAGGACAAGACCCCATTCATTGGCGATTGCTTACAACTCATC
GGGTCGTCAGTCTAGAGCAAGCTTTACAAGTGATTGAATGGTATCGTTGGCGCTGGCGAATTGAGCAACTTTTTGGCACTTTGAAGCGGTCTGGATTGGA
TTTAGAATCCACGCAGTTAGAGTCGGTTAGTGCCATTGAACGACTGACAGTTTTAGCTTTGTCCGTGGCCCTAAGGGTGTTGCAGCTTCTAGAGGGTCGA
GATGATTCCAGCCTTGTTGCTCAGGTGGTATTTAGTCCTGAAGAGCAGGAATGTCTCAGGCAACTAGCTCCGACATTGCAGGGGAAAACTCAAAAGCAGC
AAAATCCTCATGCTTCAGCTTCGTTGTCTTGGGCAACTTGGCTAATTGGCCGTTTAGGAGGATGGTCTGGGTATCGCTCCCAGTCTCCTCCTGGCATCCG
AACTTTGTGGAGGGGGCTATACCAGTTTGAATCTATCTTCCATGGATGGAAGCTCGCTCAATCCACACTTGTGTGTACACAGTAG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1329 bp442 aa1571485+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MQDHQSVNIRALSRNRAEQVGYYRFLDNDNVSLCELIQSVSDACQQQVGGLHVLAISDSSEVNLQAHVGRINPEGLGVVGNNQDVGFFIHPTLIVNAETG
FPLGLSNIQIWSRKAVRPNKHQRRYLKLPIEEKESYKWLLSAEASEPCLKNGGVKQVTHVGDRENDIYQEWVRVPNDQTHVLVRACRDRRLWDEQQSLYE
YLSAQHCEGTYSVQVVADSRLGRTAREAWLAVRMTPVQIQRPDTVEAQDYPEKVQLYAVEAKEVNPPVGQDPIHWRLLTTHRVVSLEQALQVIEWYRWRW
RIEQLFGTLKRSGLDLESTQLESVSAIERLTVLALSVALRVLQLLEGRDDSSLVAQVVFSPEEQECLRQLAPTLQGKTQKQQNPHASASLSWATWLIGRL
GGWSGYRSQSPPGIRTLWRGLYQFESIFHGWKLAQSTLVCTQ

 

Blast result :
Comments
ISSs3 is 58% aa similar to ISBthe3.
References
1] Li,T., Zhao,J., Zhao,C., Liu,Z., Zhao,F., Marquardt,J., Nomura,C.T., Persson,S., Detter,J.Chris., Richardson,P.M., Lanz,C., Schuster,S.C., Wang,J., Li,S., Huang,X., Cai,T., Yu,Z., Luo,J., Zhao,J. and Bryant,D.A. (2008) Direct submission GenBank.

2] ISfinder annotation (2009)