ISSysp3
- Family IS4
- Group IS50
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_010474 | ND | Synechococcus sp. | Synechococcus sp. PCC 7002 Synechococcus sp. PCC 7002 plasmid pAQ7 |
DNA section
IS Length : 1485 bp
Ends
IR Length : 19
IRL : CTACTGTGTACACACAAGTAGGGTGAACTAAAATGGAGGAGTCGAGAGGC
IRR : CTACTGTGTACACACAAGTGTGGATTGAGCGAGCTTCCATCCATGGAAGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GACATAATCT | CCCTCTAAAT | AGATGTGAAC | 10 |
CTCTAACTCC | CCTTAAAGGGG | AGAATGTTTT | 11 |
GTGCCATTCT | CCCCTTAAGG | GGAGTTAGAG | 10 |
AGGGTGTTCT | CCCCTGGAGG | GGAGCTAGAG | 10 |
DNA sequence
CTACTGTGTACACACAAGTAGGGTGAACTAAAATGGAGGAGTCGAGAGGCAGGAAATTCCAATGGATAATCCAATCCTGATTCACGCTACACAAATGAGC
GGCAGCTCCTTTGGCGACCCTCGCCTAGAAAAAAGGGGGCGGCATTGTATGAAGCGATGCAAGACCATCAATCAGTAAATATCCGCGCCCTGAGCCGAAA
TCGAGCAGAACAAGTGGGGTACTATCGTTTCCTTGACAACGACAATGTCAGCCTATGTGAGTTGATACAGAGCGTGTCTGACGCCTGCCAACAACAAGTG
GGAGGACTCCACGTCCTGGCCATTAGTGATAGCAGTGAGGTTAACCTACAAGCCCATGTAGGACGAATCAACCCAGAAGGATTAGGAGTGGTAGGCAATA
ACCAAGATGTCGGCTTTTTTATTCACCCGACTTTAATCGTGAACGCCGAAACAGGGTTTCCCCTAGGTCTCAGTAATATCCAAATATGGAGCCGAAAAGC
AGTTCGTCCCAATAAGCATCAACGACGTTACCTAAAGCTACCGATTGAAGAGAAAGAATCCTACAAATGGCTACTGTCTGCCGAAGCATCTGAGCCCTGT
CTGAAAAACGGGGGAGTGAAACAAGTAACCCATGTGGGCGACCGCGAAAATGACATATATCAAGAATGGGTGCGAGTTCCCAATGACCAAACCCATGTTT
TAGTGAGAGCTTGTCGGGACCGTCGCCTCTGGGATGAGCAGCAATCCCTGTATGAATACTTAAGCGCACAGCACTGCGAAGGGACTTATTCGGTGCAGGT
AGTGGCAGATTCTCGATTGGGACGTACTGCCCGCGAAGCTTGGTTAGCGGTACGGATGACTCCAGTTCAGATTCAACGGCCAGATACAGTGGAAGCTCAG
GATTATCCCGAGAAGGTACAGCTGTATGCCGTAGAAGCAAAGGAAGTCAATCCTCCCGTAGGACAAGACCCCATTCATTGGCGATTGCTTACAACTCATC
GGGTCGTCAGTCTAGAGCAAGCTTTACAAGTGATTGAATGGTATCGTTGGCGCTGGCGAATTGAGCAACTTTTTGGCACTTTGAAGCGGTCTGGATTGGA
TTTAGAATCCACGCAGTTAGAGTCGGTTAGTGCCATTGAACGACTGACAGTTTTAGCTTTGTCCGTGGCCCTAAGGGTGTTGCAGCTTCTAGAGGGTCGA
GATGATTCCAGCCTTGTTGCTCAGGTGGTATTTAGTCCTGAAGAGCAGGAATGTCTCAGGCAACTAGCTCCGACATTGCAGGGGAAAACTCAAAAGCAGC
AAAATCCTCATGCTTCAGCTTCGTTGTCTTGGGCAACTTGGCTAATTGGCCGTTTAGGAGGATGGTCTGGGTATCGCTCCCAGTCTCCTCCTGGCATCCG
AACTTTGTGGAGGGGGCTATACCAGTTTGAATCTATCTTCCATGGATGGAAGCTCGCTCAATCCACACTTGTGTGTACACAGTAG
GGCAGCTCCTTTGGCGACCCTCGCCTAGAAAAAAGGGGGCGGCATTGTATGAAGCGATGCAAGACCATCAATCAGTAAATATCCGCGCCCTGAGCCGAAA
TCGAGCAGAACAAGTGGGGTACTATCGTTTCCTTGACAACGACAATGTCAGCCTATGTGAGTTGATACAGAGCGTGTCTGACGCCTGCCAACAACAAGTG
GGAGGACTCCACGTCCTGGCCATTAGTGATAGCAGTGAGGTTAACCTACAAGCCCATGTAGGACGAATCAACCCAGAAGGATTAGGAGTGGTAGGCAATA
ACCAAGATGTCGGCTTTTTTATTCACCCGACTTTAATCGTGAACGCCGAAACAGGGTTTCCCCTAGGTCTCAGTAATATCCAAATATGGAGCCGAAAAGC
AGTTCGTCCCAATAAGCATCAACGACGTTACCTAAAGCTACCGATTGAAGAGAAAGAATCCTACAAATGGCTACTGTCTGCCGAAGCATCTGAGCCCTGT
CTGAAAAACGGGGGAGTGAAACAAGTAACCCATGTGGGCGACCGCGAAAATGACATATATCAAGAATGGGTGCGAGTTCCCAATGACCAAACCCATGTTT
TAGTGAGAGCTTGTCGGGACCGTCGCCTCTGGGATGAGCAGCAATCCCTGTATGAATACTTAAGCGCACAGCACTGCGAAGGGACTTATTCGGTGCAGGT
AGTGGCAGATTCTCGATTGGGACGTACTGCCCGCGAAGCTTGGTTAGCGGTACGGATGACTCCAGTTCAGATTCAACGGCCAGATACAGTGGAAGCTCAG
GATTATCCCGAGAAGGTACAGCTGTATGCCGTAGAAGCAAAGGAAGTCAATCCTCCCGTAGGACAAGACCCCATTCATTGGCGATTGCTTACAACTCATC
GGGTCGTCAGTCTAGAGCAAGCTTTACAAGTGATTGAATGGTATCGTTGGCGCTGGCGAATTGAGCAACTTTTTGGCACTTTGAAGCGGTCTGGATTGGA
TTTAGAATCCACGCAGTTAGAGTCGGTTAGTGCCATTGAACGACTGACAGTTTTAGCTTTGTCCGTGGCCCTAAGGGTGTTGCAGCTTCTAGAGGGTCGA
GATGATTCCAGCCTTGTTGCTCAGGTGGTATTTAGTCCTGAAGAGCAGGAATGTCTCAGGCAACTAGCTCCGACATTGCAGGGGAAAACTCAAAAGCAGC
AAAATCCTCATGCTTCAGCTTCGTTGTCTTGGGCAACTTGGCTAATTGGCCGTTTAGGAGGATGGTCTGGGTATCGCTCCCAGTCTCCTCCTGGCATCCG
AACTTTGTGGAGGGGGCTATACCAGTTTGAATCTATCTTCCATGGATGGAAGCTCGCTCAATCCACACTTGTGTGTACACAGTAG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1329 bp | 442 aa | 157 | 1485 | + | No |
Chemistry : DDE
ORF sequence :
MQDHQSVNIRALSRNRAEQVGYYRFLDNDNVSLCELIQSVSDACQQQVGGLHVLAISDSSEVNLQAHVGRINPEGLGVVGNNQDVGFFIHPTLIVNAETG
FPLGLSNIQIWSRKAVRPNKHQRRYLKLPIEEKESYKWLLSAEASEPCLKNGGVKQVTHVGDRENDIYQEWVRVPNDQTHVLVRACRDRRLWDEQQSLYE
YLSAQHCEGTYSVQVVADSRLGRTAREAWLAVRMTPVQIQRPDTVEAQDYPEKVQLYAVEAKEVNPPVGQDPIHWRLLTTHRVVSLEQALQVIEWYRWRW
RIEQLFGTLKRSGLDLESTQLESVSAIERLTVLALSVALRVLQLLEGRDDSSLVAQVVFSPEEQECLRQLAPTLQGKTQKQQNPHASASLSWATWLIGRL
GGWSGYRSQSPPGIRTLWRGLYQFESIFHGWKLAQSTLVCTQ
FPLGLSNIQIWSRKAVRPNKHQRRYLKLPIEEKESYKWLLSAEASEPCLKNGGVKQVTHVGDRENDIYQEWVRVPNDQTHVLVRACRDRRLWDEQQSLYE
YLSAQHCEGTYSVQVVADSRLGRTAREAWLAVRMTPVQIQRPDTVEAQDYPEKVQLYAVEAKEVNPPVGQDPIHWRLLTTHRVVSLEQALQVIEWYRWRW
RIEQLFGTLKRSGLDLESTQLESVSAIERLTVLALSVALRVLQLLEGRDDSSLVAQVVFSPEEQECLRQLAPTLQGKTQKQQNPHASASLSWATWLIGRL
GGWSGYRSQSPPGIRTLWRGLYQFESIFHGWKLAQSTLVCTQ
Blast result :
Comments
ISSs3 is 58% aa similar to ISBthe3.
References
1] Li,T., Zhao,J., Zhao,C., Liu,Z., Zhao,F., Marquardt,J., Nomura,C.T., Persson,S., Detter,J.Chris., Richardson,P.M., Lanz,C., Schuster,S.C., Wang,J., Li,S., Huang,X., Cai,T., Yu,Z., Luo,J., Zhao,J. and Bryant,D.A. (2008) Direct submission GenBank.
2] ISfinder annotation (2009)
2] ISfinder annotation (2009)