ISMex23

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Methylobacterium extorquens
Methylobacterium extorquens AM1
DNA section
IS Length : 1390 bp

Ends


Left end : GTTCGATGATCTCTCCACCAGAAACTCTTGAAGCCTTGCCTTCAGGTTGGGGAAAGCTCGCATCGGCGCGCTGTGAATGGTTGGAGACATTTTCGTTCCC II struct. : No
Right end : TCGACGAGGCCTCACGGTCTCCGAAAATCCCCGCTCTTCAGGGGGAAGATGTTAAGGTGCCTGGGCGCGACGTCTTCGATCTCGTGGCGGCCCACTCGGT II struct. : No

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
TACCCGCCGCGCGCTCGTTCTCGCGGTCGAGGTCATCAA

DNA sequence

GTTCGATGATCTCTCCACCAGAAACTCTTGAAGCCTTGCCTTCAGGTTGGGGAAAGCTCGCATCGGCGCGCTGTGAATGGTTGGAGACATTTTCGTTCCC
TGATAAGAACAGACCGTGACCATCGTCCGAGGCTTCCGCTACAGGCTGGATCCTCTGCCGGAGCAGGAACACCTGCTCCGGCAGTTCGCGGGGGTGTGTC
GCCTCGTCTACAACCTCGGCCTGGAGCAACGCGCGACCTGGGGCCGGAGACATCGGATCGGGTTTGCCTCTCAATGCGTCGACCTGACCCGGCTTCGAGC
CGAGTTCGACTGGGTGCGCGCCGTCTATGTCTCGTGCCAGCAGCAGGCTCTGCGCGATCTCGACCGAGCCTTCCAGAACTTCTTCGCCGGACGCGCCTCG
TTTCCGCGCCCGCGCAAGCGCGGCGTCAACGACAGCTTGCGCTTCCCCGGCCGAGAGATCGAGATCAAGCGGCTGAACGCGAGATGGTCGGCCGTACGTC
TGCCGAAGATCGGCTGGGTCAAGTTCCGCGACACCCAGCCGACGCGTGGCAGCATGAAGAACGCCACCGTCTCGCTCGACGCGGACGGCTGGCAGGTCTC
CTTCGCCTGCGAGATCGAGCACGAAGCTCCCGCGCCGCTGCCCGCGATCATCGGGATCGACCGCGGCGTGGCGACGACGCTCGCCCTCTCGACGGGCGAG
ACGATGAAGATGCCCACCAGCCTGGAGCGGATCGAGGCTCGTAAGAGGAAGGCACAGCGCGTCGTCGCCCGGCGCCAGCGCGGCTCGAAGCGCCGGCGGC
GAGCGCAGCGGCGCGTGGCCCGCCTACAGGCCCGACAGGCCCACATCCGGCGCGACTTCCACCACCGGGCGGCGCTCGGCATCGCTCGCCGGTTCGGCGT
CGCCGTGCTCGAAGCTCTGAACACCAGAAACATGACCGCCTCGGCGCGCGGCACCGTCATGGAGCCCGGCCGCAACGTGCGCCAGAAGGCTGGGCTGAAC
CGGGCGATCCTCAACGCGGGTTGGCACGCCTTCGCGACGATCCTGAGCTACAAGATGGAGGAGAGAGGCGGTCAGGTCGTGACGGTCCCGGCACGGTTCA
CGAGCCAGACCTGCGCGGCCTGTGGTGTCGTCGATGCAAGGAGCCGCGAGAGCCAAGCGCGCTTCTCCTGCATCAGTTGTGGTCACACCGACCACGCCGA
CACCAATGCCGCGATTAATATACAACGGCGGTGGAACACACCGTTGCTGGACGTGGAGGGTTTGCGTCAGCGGCCCTACGAAGCGTCAACTCGACGAGGC
CTCACGGTCTCCGAAAATCCCCGCTCTTCAGGGGGAAGATGTTAAGGTGCCTGGGCGCGACGTCTTCGATCTCGTGGCGGCCCACTCGGT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1230 bp409 aa1161345+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

VTIVRGFRYRLDPLPEQEHLLRQFAGVCRLVYNLGLEQRATWGRRHRIGFASQCVDLTRLRAEFDWVRAVYVSCQQQALRDLDRAFQNFFAGRASFPRPR
KRGVNDSLRFPGREIEIKRLNARWSAVRLPKIGWVKFRDTQPTRGSMKNATVSLDADGWQVSFACEIEHEAPAPLPAIIGIDRGVATTLALSTGETMKMP
TSLERIEARKRKAQRVVARRQRGSKRRRRAQRRVARLQARQAHIRRDFHHRAALGIARRFGVAVLEALNTRNMTASARGTVMEPGRNVRQKAGLNRAILN
AGWHAFATILSYKMEERGGQVVTVPARFTSQTCAACGVVDARSRESQARFSCISCGHTDHADTNAAINIQRRWNTPLLDVEGLRQRPYEASTRRGLTVSE
NPRSSGGRC

 

Blast result :
Comments
ISMex23 is 89% aa similar to ISMex43.
References
1] Stephane Vuilleumier et.al. Methylobacterium genome sequences: a reference blueprint to investigate microbial metabolism of C1 compounds from natural and industrial sources. (2009) PLoS ONE Submitted.