ISMex31

  • Family IS110
  • Group IS1111
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Methylobacterium extorquens
Methylobacterium extorquens AM1
Methylobacterium dichloromethanicum DM4
DNA section
IS Length : 1091 bp

Ends


IR Length : 11/12

IRL : tagcaaaGAGTTCGGTCGCCGTGCTGGGTATCGATCTCGGCAAAAACAGC
IRR : ggtGAGTTCCGTCGCGTCTTCTTTTTCGATCATTGCGACTCGCGGCTTGG

Insertion site


Left flankDirect repeatRight flankDR Length
GGATCGGGAAGTAAATTACA0

DNA sequence

TAGCAAAGAGTTCGGTCGCCGTGCTGGGTATCGATCTCGGCAAAAACAGCTGTAGCCTGGTTGGCTTCGACCCAGCCGGTACGGTGGTTCTGCGTCGTCG
CGCACGGCGTGACACGATCGTCGGCCTGACGGCCAAGCTGCCCGCTTGTGTCGTCGCGATGGAGGCCTGCTGCGGCGCCCATCACCTCGGGCGGCTGCTG
GCCGCGCAGGGACATACCATCCGACTGATGTCGCCCGAGTATGCCAAGGCGAAGAAGAACGACGACCGCGATGCCGAGGCGATCGCCGAGGCCGCCACAC
GTCCGACGATGCGCTTCGTGCCCCTCAAGGCGCCCGATCAACTCGACATGCAGAGCCTGCACCGGGTCCGGTCTCGGCTGGTCAGCATGCGTACCATGCT
CATGAACCAGCTCCGCGCGATCCTGCTGGAGCGCGGTCTCGTTTTCCCGCAAGGCCGCCGCAAGTTCGAGACGGCGGTCGGCATTCTCGTGACGGATCCC
CAGGCGCAGATTGGCGCGCGTATCCAAGCTCTTGTCGCCGAGATCCGTGAGGAGTGGGCAAGCCTCGACGGCCGTATCGAAGCTCTCGACCGAGAGTTCG
TGGCGCATGCCCGCGCCGACGAGGCGGCACGTCGCCTGGTGTCTATCTCAGGCGTCGGGCCGATGACGGCCACGGCCTTGCGCGCGGCCGTCGACGACGG
AAGCGCCTTCGCGTCCGCGCGCGACCTGCCGGCTTGGCTTGGCCTCGTGCCCCGACAGCATACGACCGGCGGCAAGCCGAAGCTGCTCGGCATCAGCAAG
AGGGGCAACGCCTATCTGCGTGGGCTCTTCATCCATGGGGCGCGCGCAGCGCTGGCCTCGCTGTCCAAGGTCGAGGATGCGACCGGCCGATGGCTGCGCA
GTCTGCTGGAATGTACACCTGTGGGCCCTAAAATAGCTGTTTAAGATCAACGGCGCGTCAATCTGCCACATATGATCTTCTGGCTTTTTCCACAAGGCGA
GCGCGCTTATCGCTTGGAACGGTGGTTCAACCGTTCCTGAACCAAGCCGCGAGTCGCAATGATCGAAAAAGAAGACGCGACGGAACTCACC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
924 bp307 aa21944+No
ORF function : Transposase
Description :

ORF sequence :

VLGIDLGKNSCSLVGFDPAGTVVLRRRARRDTIVGLTAKLPACVVAMEACCGAHHLGRLLAAQGHTIRLMSPEYAKAKKNDDRDAEAIAEAATRPTMRFV
PLKAPDQLDMQSLHRVRSRLVSMRTMLMNQLRAILLERGLVFPQGRRKFETAVGILVTDPQAQIGARIQALVAEIREEWASLDGRIEALDREFVAHARAD
EAARRLVSISGVGPMTATALRAAVDDGSAFASARDLPAWLGLVPRQHTTGGKPKLLGISKRGNAYLRGLFIHGARAALASLSKVEDATGRWLRSLLECTP
VGPKIAV

 

Blast result :
Comments
ISMex31 is 75% aa similar to ISMmg1.
References
1] Stephane Vuilleumier et.al. Methylobacterium genome sequences: a reference blueprint to investigate microbial metabolism of C1 compounds from natural and industrial sources. (2009) PLoS ONE Submitted.