ISSysp2
- Family IS4
- Group IS10
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_010478 | ND | Synechococcus sp. | Synechococcus sp. PCC 7002 |
DNA section
IS Length : 1179 bp
Ends
IR Length : 19/21
IRL : CTCAGTACAGGACAAAAAGTTTGAAAAGGATAGAGGGAGAGGGTTTGATG
IRR : CTAAGTACAGGACAAAAGTTGTATGGGGTGAAACTCTGACCCAAGTAGAG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AGAGTTTTAT | AGGTTCGTT | TCGTAAAAC | 9 |
AATCGATTGT | GTAAACGACA | 0 |
DNA sequence
CTCAGTACAGGACAAAAAGTTTGAAAAGGATAGAGGGAGAGGGTTTGATGGAAATAAGCACAAATCAATCAAGCCCTCATGAATCAGATTAGCGAAATTC
GCCGCCAATTGCGACCTCATCTCGGATGGCATGGAGCCAGACTGTCATTTATCGCCCTCTTCCTGGTGGCACTGTTCCGAGCAAAAACCGTCAATCTCGC
CAAACTCGCCACCGTCTGGGGAGGCAATGCAGCAGAAGAGTCTAATTACAAACGCATGCAGCGATTCTTTCAGTCCTTTGACGTCAACATGGACAAAATC
GCCAGGATGGTAATGAATATCGCGGCTATCCCGCAACCTTGGGTCTTAAGCATCGACCGCACCAACTGGTCATTGGGGACAACTGACTTCAACATCCTAA
TGCTGTGCGTCGTCCATGAGGGTATCGGCTATCCATTGATGTGGACGATGCTCAAAAAGAAGAGGGGCAACAGCAATAGTACAGAGCGCATGGATTTGCT
CGAACGCTTTGAAACCTTATTTCCCAATATCGAGATTGCCTATCTCACGGGAGACCGAGAGTTTATCGGCAAGCCCTGGTTATCGTATCTGATGCTCGAT
AAGCCTATTCCCTTTCGTCTGCGCCTACGTCAGACCGACAAAATAAGTAAAGGCAAAGGTCAACCCGCCATCGCGGGGTCACATCTGTTTCGCTCCTTAG
CCATTGGCGAAACAAGAATACTGTCAGGAAAACGGTGGGTCTGGGGTCGTCAGGTCTACGTCATGGGCACTCGTCTCGACCCGAAACGAAGAGCTCACAA
AAATGAGGATGAGTTTCTGATTATCATCACCACCCATGACCCTCAAAATGCTCTAGCAGATTACCGTCGTCGCTGGGGAATTGAAACCCTGTTTGGGGCT
CTTAAGACCCGTGGCTTTTGCTTGGAATCGACCCATTTTACCGATAAGGTGCGTTTGTCGAAGCTGCTGGCTCTGTTGGCCATTGGCTTTGTCTGGGCGA
TGCAAGCGGGTTTATGGCGACATACTCAAAAACCGATTCGTATCATCAAGGCCCATGGCCGTCGAGCTCGGAGTTTGTTTCGCTATGACTTTGACTTATT
GCGTCGCTTTTTTACCGCTTCTCCCCAATCTCTACTTGGGTCAGAGTTTCACCCCATACAACTTTTGTCCTGTACTTAG
GCCGCCAATTGCGACCTCATCTCGGATGGCATGGAGCCAGACTGTCATTTATCGCCCTCTTCCTGGTGGCACTGTTCCGAGCAAAAACCGTCAATCTCGC
CAAACTCGCCACCGTCTGGGGAGGCAATGCAGCAGAAGAGTCTAATTACAAACGCATGCAGCGATTCTTTCAGTCCTTTGACGTCAACATGGACAAAATC
GCCAGGATGGTAATGAATATCGCGGCTATCCCGCAACCTTGGGTCTTAAGCATCGACCGCACCAACTGGTCATTGGGGACAACTGACTTCAACATCCTAA
TGCTGTGCGTCGTCCATGAGGGTATCGGCTATCCATTGATGTGGACGATGCTCAAAAAGAAGAGGGGCAACAGCAATAGTACAGAGCGCATGGATTTGCT
CGAACGCTTTGAAACCTTATTTCCCAATATCGAGATTGCCTATCTCACGGGAGACCGAGAGTTTATCGGCAAGCCCTGGTTATCGTATCTGATGCTCGAT
AAGCCTATTCCCTTTCGTCTGCGCCTACGTCAGACCGACAAAATAAGTAAAGGCAAAGGTCAACCCGCCATCGCGGGGTCACATCTGTTTCGCTCCTTAG
CCATTGGCGAAACAAGAATACTGTCAGGAAAACGGTGGGTCTGGGGTCGTCAGGTCTACGTCATGGGCACTCGTCTCGACCCGAAACGAAGAGCTCACAA
AAATGAGGATGAGTTTCTGATTATCATCACCACCCATGACCCTCAAAATGCTCTAGCAGATTACCGTCGTCGCTGGGGAATTGAAACCCTGTTTGGGGCT
CTTAAGACCCGTGGCTTTTGCTTGGAATCGACCCATTTTACCGATAAGGTGCGTTTGTCGAAGCTGCTGGCTCTGTTGGCCATTGGCTTTGTCTGGGCGA
TGCAAGCGGGTTTATGGCGACATACTCAAAAACCGATTCGTATCATCAAGGCCCATGGCCGTCGAGCTCGGAGTTTGTTTCGCTATGACTTTGACTTATT
GCGTCGCTTTTTTACCGCTTCTCCCCAATCTCTACTTGGGTCAGAGTTTCACCCCATACAACTTTTGTCCTGTACTTAG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1101 bp | 366 aa | 79 | 1179 | + | No |
Chemistry : DDE
ORF sequence :
MNQISEIRRQLRPHLGWHGARLSFIALFLVALFRAKTVNLAKLATVWGGNAAEESNYKRMQRFFQSFDVNMDKIARMVMNIAAIPQPWVLSIDRTNWSLG
TTDFNILMLCVVHEGIGYPLMWTMLKKKRGNSNSTERMDLLERFETLFPNIEIAYLTGDREFIGKPWLSYLMLDKPIPFRLRLRQTDKISKGKGQPAIAG
SHLFRSLAIGETRILSGKRWVWGRQVYVMGTRLDPKRRAHKNEDEFLIIITTHDPQNALADYRRRWGIETLFGALKTRGFCLESTHFTDKVRLSKLLALL
AIGFVWAMQAGLWRHTQKPIRIIKAHGRRARSLFRYDFDLLRRFFTASPQSLLGSEFHPIQLLSCT
TTDFNILMLCVVHEGIGYPLMWTMLKKKRGNSNSTERMDLLERFETLFPNIEIAYLTGDREFIGKPWLSYLMLDKPIPFRLRLRQTDKISKGKGQPAIAG
SHLFRSLAIGETRILSGKRWVWGRQVYVMGTRLDPKRRAHKNEDEFLIIITTHDPQNALADYRRRWGIETLFGALKTRGFCLESTHFTDKVRLSKLLALL
AIGFVWAMQAGLWRHTQKPIRIIKAHGRRARSLFRYDFDLLRRFFTASPQSLLGSEFHPIQLLSCT
Blast result :
Comments
ISSs2 is 49% aa similar to ISDge9.
References
1] Li,T., Zhao,J., Zhao,C., Liu,Z., Zhao,F., Marquardt,J., Nomura,C.T., Persson,S., Detter,J.Chris., Richardson,P.M., Lanz,C., Schuster,S.C., Wang,J., Li,S., Huang,X., Cai,T., Yu,Z., Luo,J., Zhao,J. and Bryant,D.A. (2008) Direct submission GenBank.
2] ISfinder annotation (2009).
2] ISfinder annotation (2009).