ISSysp2

  • Family IS4
  • Group IS10
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_010478 ND Synechococcus sp.
Synechococcus sp. PCC 7002
DNA section
IS Length : 1179 bp

Ends


IR Length : 19/21

IRL : CTCAGTACAGGACAAAAAGTTTGAAAAGGATAGAGGGAGAGGGTTTGATG
IRR : CTAAGTACAGGACAAAAGTTGTATGGGGTGAAACTCTGACCCAAGTAGAG

Insertion site


Left flankDirect repeatRight flankDR Length
AGAGTTTTATAGGTTCGTTTCGTAAAAC9
AATCGATTGTGTAAACGACA0

DNA sequence

CTCAGTACAGGACAAAAAGTTTGAAAAGGATAGAGGGAGAGGGTTTGATGGAAATAAGCACAAATCAATCAAGCCCTCATGAATCAGATTAGCGAAATTC
GCCGCCAATTGCGACCTCATCTCGGATGGCATGGAGCCAGACTGTCATTTATCGCCCTCTTCCTGGTGGCACTGTTCCGAGCAAAAACCGTCAATCTCGC
CAAACTCGCCACCGTCTGGGGAGGCAATGCAGCAGAAGAGTCTAATTACAAACGCATGCAGCGATTCTTTCAGTCCTTTGACGTCAACATGGACAAAATC
GCCAGGATGGTAATGAATATCGCGGCTATCCCGCAACCTTGGGTCTTAAGCATCGACCGCACCAACTGGTCATTGGGGACAACTGACTTCAACATCCTAA
TGCTGTGCGTCGTCCATGAGGGTATCGGCTATCCATTGATGTGGACGATGCTCAAAAAGAAGAGGGGCAACAGCAATAGTACAGAGCGCATGGATTTGCT
CGAACGCTTTGAAACCTTATTTCCCAATATCGAGATTGCCTATCTCACGGGAGACCGAGAGTTTATCGGCAAGCCCTGGTTATCGTATCTGATGCTCGAT
AAGCCTATTCCCTTTCGTCTGCGCCTACGTCAGACCGACAAAATAAGTAAAGGCAAAGGTCAACCCGCCATCGCGGGGTCACATCTGTTTCGCTCCTTAG
CCATTGGCGAAACAAGAATACTGTCAGGAAAACGGTGGGTCTGGGGTCGTCAGGTCTACGTCATGGGCACTCGTCTCGACCCGAAACGAAGAGCTCACAA
AAATGAGGATGAGTTTCTGATTATCATCACCACCCATGACCCTCAAAATGCTCTAGCAGATTACCGTCGTCGCTGGGGAATTGAAACCCTGTTTGGGGCT
CTTAAGACCCGTGGCTTTTGCTTGGAATCGACCCATTTTACCGATAAGGTGCGTTTGTCGAAGCTGCTGGCTCTGTTGGCCATTGGCTTTGTCTGGGCGA
TGCAAGCGGGTTTATGGCGACATACTCAAAAACCGATTCGTATCATCAAGGCCCATGGCCGTCGAGCTCGGAGTTTGTTTCGCTATGACTTTGACTTATT
GCGTCGCTTTTTTACCGCTTCTCCCCAATCTCTACTTGGGTCAGAGTTTCACCCCATACAACTTTTGTCCTGTACTTAG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1101 bp366 aa791179+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MNQISEIRRQLRPHLGWHGARLSFIALFLVALFRAKTVNLAKLATVWGGNAAEESNYKRMQRFFQSFDVNMDKIARMVMNIAAIPQPWVLSIDRTNWSLG
TTDFNILMLCVVHEGIGYPLMWTMLKKKRGNSNSTERMDLLERFETLFPNIEIAYLTGDREFIGKPWLSYLMLDKPIPFRLRLRQTDKISKGKGQPAIAG
SHLFRSLAIGETRILSGKRWVWGRQVYVMGTRLDPKRRAHKNEDEFLIIITTHDPQNALADYRRRWGIETLFGALKTRGFCLESTHFTDKVRLSKLLALL
AIGFVWAMQAGLWRHTQKPIRIIKAHGRRARSLFRYDFDLLRRFFTASPQSLLGSEFHPIQLLSCT

 

Blast result :
Comments
ISSs2 is 49% aa similar to ISDge9.
References
1] Li,T., Zhao,J., Zhao,C., Liu,Z., Zhao,F., Marquardt,J., Nomura,C.T., Persson,S., Detter,J.Chris., Richardson,P.M., Lanz,C., Schuster,S.C., Wang,J., Li,S., Huang,X., Cai,T., Yu,Z., Luo,J., Zhao,J. and Bryant,D.A. (2008) Direct submission GenBank.

2] ISfinder annotation (2009).