ISMex43

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Methylobacterium extorquens
Methylobacterium extorquens AM1
DNA section
IS Length : 1250 bp

Ends


Left end : TGGTTAGATGATCGCACGCGGCTTCCGCTTCAAGCTGGAACCGCTGCCCGAGCAGGAAGCCCTGTTCCGGCAGTTCGCGGGCGTGTGTCGCCTCGTCTAC II struct. : No
Right end : TCGCATCAGCGGCCCGTTGAAGCGTCAACTGGACGAGACCTCACAGTCTCCGAAAATCCCCTTCCTTCAGGGCGGGGAAGATGTTAAGTCGGTGTCTCGT II struct. : No

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
GCAAGCGAAGTTTGTTCTGGAGGTG

DNA sequence

TGGTTAGATGATCGCACGCGGCTTCCGCTTCAAGCTGGAACCGCTGCCCGAGCAGGAAGCCCTGTTCCGGCAGTTCGCGGGCGTGTGTCGCCTCGTCTAC
AATCTCGGCCTGGAACAGAAGGCGACGTGGGGACGGAAACACCGGCTCGGGTACGTCGCCCAGGCTGCTGACCTGACCCGCCTTCGCTCCGAGTTCGAAT
GGGTGCGTGCCGTCTACGTCTCGTGCCAGCAGCAGGCGTTGCGTGATCTCGACCGCGCCTTTCAGAACTTCTTCGCGGGCCGAGCAAGCTTCCCACGGCC
CCGCAAGCGCGGCGTCGATGACAGCTTCCGCTTCCCTGGTCGCGAGGCCGCGGTGAAGCCGATGAATGCCAAGTGGTCGGCCGTGCGCCTGCCCAAGATC
GGCTGGGTCAAGTTCCGCGATACGCGGCCGATGCGAGGCGTTCTGAAGAACGTGACGGTCAGCAACGATGCCTTGGGTTGGCACATCGCATTCACCTGCG
AGATCGATCACGAAGCAACCGCGCCGAACCCCGAGGCCGTCGGGATCGACCGAGGCGTAGCCACGACGCTCGCCCTGTCCACGGGCGAGATGCTGACGCT
GCCCGCGAGCCTGGAGCGCATCGAGGCTCAGAAGCGTCAGGCGCAGCGCGTCGTCGCCCGGCGCAAGCGTGGGTCGAACCGCAGGCGCAGGGCTCAGGCC
CGTGTCGCCCGTCTCCAAGCCCGGCAAGCCCGCATCCGGCGCGACTTCCACCACCGGGCTGCGCTCGACATCGCCAAGCGGTTCGGCGTCGCCGTACTCG
AAGACCTCAAAACGCGTGGCATGACCGCCAGCGCGAAAGGCACCGTAGCCGAACCCGGCCGGAACGTCCGTCAGAAGGCGGGTCTGAACCGGGTGATCTT
GAACGCGGGCTGGCACCAGTTCGCGACGATCCTGACGTACAAGGTGGAGGAGCGCGGCGGGCAGGTGGTCAGTGTGCCTGCCCGGTTCACGTCGCAGACT
TGCGCGGCGTGCGGTGTGGTTGATGCGAGGAGCCGCGAAAGCCAAGCGGTCTTCACCTGCATCAGTTGCGGCCACTCAGACCACGCCGACACCAACGCGG
CCATCAATATTAAACGGCGGTGGAACACACCGTTGCTGGACGTGGAGGGTTCGCATCAGCGGCCCGTTGAAGCGTCAACTGGACGAGACCTCACAGTCTC
CGAAAATCCCCTTCCTTCAGGGCGGGGAAGATGTTAAGTCGGTGTCTCGT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1230 bp409 aa81237+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MIARGFRFKLEPLPEQEALFRQFAGVCRLVYNLGLEQKATWGRKHRLGYVAQAADLTRLRSEFEWVRAVYVSCQQQALRDLDRAFQNFFAGRASFPRPRK
RGVDDSFRFPGREAAVKPMNAKWSAVRLPKIGWVKFRDTRPMRGVLKNVTVSNDALGWHIAFTCEIDHEATAPNPEAVGIDRGVATTLALSTGEMLTLPA
SLERIEAQKRQAQRVVARRKRGSNRRRRAQARVARLQARQARIRRDFHHRAALDIAKRFGVAVLEDLKTRGMTASAKGTVAEPGRNVRQKAGLNRVILNA
GWHQFATILTYKVEERGGQVVSVPARFTSQTCAACGVVDARSRESQAVFTCISCGHSDHADTNAAINIKRRWNTPLLDVEGSHQRPVEASTGRDLTVSEN
PLPSGRGRC

 

Blast result :
Comments
ISMex43 is 56% (TnpB) aa similar to ISTfu1.
References
1] Stephane Vuilleumier et.al. Methylobacterium genome sequences: a reference blueprint to investigate microbial metabolism of C1 compounds from natural and industrial sources. (2009) PLoS ONE Submitted.