ISMex20
- Family IS200/IS605
- Group IS200
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| ND | Methylobacterium extorquens | Methylobacterium extorquens AM1 |
DNA section
IS Length : 407 bp
Ends
Left end : ACCTCATCTGCTTCGCGCGCGGAAGACGTGCTCTCCGCTCTGGCGATCCGCGACCTGACAGCGATCTTCGCCAAGGTGTGTCGGGATTTTGGGGCCGAAC II struct. : Yes
Right end : CCGTTGTAGCCGAGTACGTCCGTTCACAGCGCGCAGACGCGCGCTCTCCCCGGCCTGAAGGCCGAGGTTTCGAGGATTTCCGATGACCCGTTTGCTTCTC II struct. : Yes
Insertion site
| Left flank | LE cleavage site | Right flank | RE cleavage site |
|---|---|---|---|
| CGCGCTCGCTTT | TTAT | GCGGCGCTGG | tctc |
DNA sequence
ACCTCATCTGCTTCGCGCGCGGAAGACGTGCTCTCCGCTCTGGCGATCCGCGACCTGACAGCGATCTTCGCCAAGGTGTGTCGGGATTTTGGGGCCGAAC
TGATCGAGTGTTCTGGGGAGGACGATCACGTCCACCTGCTGGTCACCTACCCACCCACGGTCGTGATCCCGAAGCTCGTCAATAGCCTCAAGGGCGTGTC
GAGCCGAAAGCTCCGGGACATGCGCCCGGAGATTACCGGCCGCTACCACCAGGGCGTGCTCTGGACGCCTTCGTACTTCGTCGCCTCGTGCGGCGGTGCC
CCCTTGTCCGTTGTAGCCGAGTACGTCCGTTCACAGCGCGCAGACGCGCGCTCTCCCCGGCCTGAAGGCCGAGGTTTCGAGGATTTCCGATGACCCGTTT
GCTTCTC
TGATCGAGTGTTCTGGGGAGGACGATCACGTCCACCTGCTGGTCACCTACCCACCCACGGTCGTGATCCCGAAGCTCGTCAATAGCCTCAAGGGCGTGTC
GAGCCGAAAGCTCCGGGACATGCGCCCGGAGATTACCGGCCGCTACCACCAGGGCGTGCTCTGGACGCCTTCGTACTTCGTCGCCTCGTGCGGCGGTGCC
CCCTTGTCCGTTGTAGCCGAGTACGTCCGTTCACAGCGCGCAGACGCGCGCTCTCCCCGGCCTGAAGGCCGAGGTTTCGAGGATTTCCGATGACCCGTTT
GCTTCTC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 366 bp | 121 aa | 28 | 393 | + | No |
Chemistry : Y1
ORF sequence :
VLSALAIRDLTAIFAKVCRDFGAELIECSGEDDHVHLLVTYPPTVVIPKLVNSLKGVSSRKLRDMRPEITGRYHQGVLWTPSYFVASCGGAPLSVVAEYV
RSQRADARSPRPEGRGFEDFR
RSQRADARSPRPEGRGFEDFR
Blast result :
Comments
ISMex20 is 71% aa similar to IS609.
References
1] Stephane Vuilleumier et.al. Methylobacterium genome sequences: a reference blueprint to investigate microbial metabolism of C1 compounds from natural and industrial sources. (2009) PLoS ONE Submitted.