ISBps2
- Family IS3
- Group IS3
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_006351 | ND | Burkholderia pseudomallei | Burkholderia pseudomallei K96243 |
DNA section
IS Length : 1233 bp
Ends
IR Length : 18/25
IRL : TGTAGTGGTTCAATGCCCTTGGACGGTTCGAAAAGAAGGTAACGTGTCGT
IRR : TGAAGTGGTCAAGCAACTTTGGACACTGCTCCGGGATAGGCTGCGAGCGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CCGCCCGGCG | GCTGAGGTGG | 0 |
DNA sequence
TGTAGTGGTTCAATGCCCTTGGACGGTTCGAAAAGAAGGTAACGTGTCGTCTGGAGGGCCAAACCATGGTCAGGCGTGCGTTTTCCGAGGAATTCAAGGA
AGAAGCGATACGACTCGTCGTAGAGCAGGGTTACCCCTTTTCCAAGGCGTGTGGGGCGGTTGGAATTGGGGAGACAGCCCTGCGTCGCTGGGTCGCGCAG
TGGCGGGCGGCGCATAGCTTGGATGTGCCCAGTCCTGCACAACTCAGTGCAGACGCGCGCCGGATCAAGGAGCTAGAGGCCCGCGTAGCCGAACTCGAAC
GGGAGCGTGAAGTTTTAAAAAAATCCACGGCCTTCTTCGTCAAGGAGCTCGAACGCTCCTGGAAGTGATCCAGGCGATGGAGAAGGCATACCCGGTAGCG
CTGATGTGTCGACTGGCTGGTGTAGCACGCAGCAGCTATTACGCATGGAGGTCGCGCCAAGGCAGATCCAATCGCGACGCGACGGTGCTGGAAGCGGTGC
GCCGTATTCATGAGGAGACTCGTCGAAGCTACGGCAGCAGGAGGATGTCGCAAGCGTTGCGCTTGCTCGGACACAACGTAGGACGTTATCGGGCACGATC
GTTGATGCGTCAGGCCCGGCTGGTGCGGTCTAAGCGCGTACATCGTTATCGAGCGGCTCAGGCCGAGAGTCTGATTGCGCCGAATCTGCTTGCACGACGA
TTCGATCCGGCGCAGCGCGATCAGGTATGGGTGGGCGACATCACCTTTGTACAGACTAGGCAGGGATGGCTCTACGTGGCCGTGGTCATGGATCTGTACG
CGCGCCGCGTGGTGGGCTGGGCGTTTAGTCAGCACGCGGACACCGACTTGGCACTAAAGGCATTAAGACGGGCCTACGATCATCGTCGTCCGCCACCAGG
CCTGATGTTCCATTCGGATCAGGGCTGCCAATACACGAGCACGCGCTTTCTCGCCGAGCTGCGCGCCCGTGGCACGATCCAGAGCATGAGTCGGCGCGGC
AACTGTTGGGACAACGCGGTGGTCGAGCGCTTCTTCCGAAGCCTCAAAAATGAATGGATCGGCGACCAGTTGTACGTCGATCACCGCCATGCAGAGCAAG
ACATCACTGATTATCTGGTCGATTTTTACAACCATCGTCGCCTTCACTCGGCTGCGAAGGGACTGCCGCCAGCGCGTTTCGAAGCGCTCGCAGCCTATCC
CGGAGCAGTGTCCAAAGTTGCTTGACCACTTCA
AGAAGCGATACGACTCGTCGTAGAGCAGGGTTACCCCTTTTCCAAGGCGTGTGGGGCGGTTGGAATTGGGGAGACAGCCCTGCGTCGCTGGGTCGCGCAG
TGGCGGGCGGCGCATAGCTTGGATGTGCCCAGTCCTGCACAACTCAGTGCAGACGCGCGCCGGATCAAGGAGCTAGAGGCCCGCGTAGCCGAACTCGAAC
GGGAGCGTGAAGTTTTAAAAAAATCCACGGCCTTCTTCGTCAAGGAGCTCGAACGCTCCTGGAAGTGATCCAGGCGATGGAGAAGGCATACCCGGTAGCG
CTGATGTGTCGACTGGCTGGTGTAGCACGCAGCAGCTATTACGCATGGAGGTCGCGCCAAGGCAGATCCAATCGCGACGCGACGGTGCTGGAAGCGGTGC
GCCGTATTCATGAGGAGACTCGTCGAAGCTACGGCAGCAGGAGGATGTCGCAAGCGTTGCGCTTGCTCGGACACAACGTAGGACGTTATCGGGCACGATC
GTTGATGCGTCAGGCCCGGCTGGTGCGGTCTAAGCGCGTACATCGTTATCGAGCGGCTCAGGCCGAGAGTCTGATTGCGCCGAATCTGCTTGCACGACGA
TTCGATCCGGCGCAGCGCGATCAGGTATGGGTGGGCGACATCACCTTTGTACAGACTAGGCAGGGATGGCTCTACGTGGCCGTGGTCATGGATCTGTACG
CGCGCCGCGTGGTGGGCTGGGCGTTTAGTCAGCACGCGGACACCGACTTGGCACTAAAGGCATTAAGACGGGCCTACGATCATCGTCGTCCGCCACCAGG
CCTGATGTTCCATTCGGATCAGGGCTGCCAATACACGAGCACGCGCTTTCTCGCCGAGCTGCGCGCCCGTGGCACGATCCAGAGCATGAGTCGGCGCGGC
AACTGTTGGGACAACGCGGTGGTCGAGCGCTTCTTCCGAAGCCTCAAAAATGAATGGATCGGCGACCAGTTGTACGTCGATCACCGCCATGCAGAGCAAG
ACATCACTGATTATCTGGTCGATTTTTACAACCATCGTCGCCTTCACTCGGCTGCGAAGGGACTGCCGCCAGCGCGTTTCGAAGCGCTCGCAGCCTATCC
CGGAGCAGTGTCCAAAGTTGCTTGACCACTTCA
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
303 bp | 100 aa | 66 | 368 | + | No |
Description : First part of the transposase
ORF sequence :
MVRRAFSEEFKEEAIRLVVEQGYPFSKACGAVGIGETALRRWVAQWRAAHSLDVPSPAQLSADARRIKELEARVAELEREREVLKKSTAFFVKELERSWK
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
915 bp | 304 aa | 311 | 1225 | + | No |
Description : Second part of the transposase
ORF sequence :
SFKKIHGLLRQGARTLLEVIQAMEKAYPVALMCRLAGVARSSYYAWRSRQGRSNRDATVLEAVRRIHEETRRSYGSRRMSQALRLLGHNVGRYRARSLMR
QARLVRSKRVHRYRAAQAESLIAPNLLARRFDPAQRDQVWVGDITFVQTRQGWLYVAVVMDLYARRVVGWAFSQHADTDLALKALRRAYDHRRPPPGLMF
HSDQGCQYTSTRFLAELRARGTIQSMSRRGNCWDNAVVERFFRSLKNEWIGDQLYVDHRHAEQDITDYLVDFYNHRRLHSAAKGLPPARFEALAAYPGAV
SKVA
QARLVRSKRVHRYRAAQAESLIAPNLLARRFDPAQRDQVWVGDITFVQTRQGWLYVAVVMDLYARRVVGWAFSQHADTDLALKALRRAYDHRRPPPGLMF
HSDQGCQYTSTRFLAELRARGTIQSMSRRGNCWDNAVVERFFRSLKNEWIGDQLYVDHRHAEQDITDYLVDFYNHRRLHSAAKGLPPARFEALAAYPGAV
SKVA
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1160 bp | 386 aa | 66 | 1225 | + | Yes |
Chemistry : DDE
ORF sequence :
MVRRAFSEEFKEEAIRLVVEQGYPFSKACGAVGIGETALRRWVAQWRAAHSLDVPSPAQLSADARRIKELEARVAELEREREVLKKIHGLLRQGARTLLE
VIQAMEKAYPVALMCRLAGVARSSYYAWRSRQGRSNRDATVLEAVRRIHEETRRSYGSRRMSQALRLLGHNVGRYRARSLMRQARLVRSKRVHRYRAAQA
ESLIAPNLLARRFDPAQRDQVWVGDITFVQTRQGWLYVAVVMDLYARRVVGWAFSQHADTDLALKALRRAYDHRRPPPGLMFHSDQGCQYTSTRFLAELR
ARGTIQSMSRRGNCWDNAVVERFFRSLKNEWIGDQLYVDHRHAEQDITDYLVDFYNHRRLHSAAKGLPPARFEALAAYPGAVSKVA
VIQAMEKAYPVALMCRLAGVARSSYYAWRSRQGRSNRDATVLEAVRRIHEETRRSYGSRRMSQALRLLGHNVGRYRARSLMRQARLVRSKRVHRYRAAQA
ESLIAPNLLARRFDPAQRDQVWVGDITFVQTRQGWLYVAVVMDLYARRVVGWAFSQHADTDLALKALRRAYDHRRPPPGLMFHSDQGCQYTSTRFLAELR
ARGTIQSMSRRGNCWDNAVVERFFRSLKNEWIGDQLYVDHRHAEQDITDYLVDFYNHRRLHSAAKGLPPARFEALAAYPGAVSKVA
Blast result :
Comments
ISBsp2 is 60% aa similar to ISDac1.
The third ORF is a putative ORFAB transposase reconstructed in silico by possible -1 frameshift.
The third ORF is a putative ORFAB transposase reconstructed in silico by possible -1 frameshift.
References
1] Holden,M.T., Titball,R.W., Peacock,S.J., Cerdeno-Tarraga,A.M., Atkins,T., Crossman,L.C., Pitt,T., Churcher,C., Mungall,K., Bentley,S.D., Sebaihia,M., Thomson,N.R., Bason,N., Beacham,I.R., Brooks,K., Brown,K.A., Brown,N.F., Challis,G.L., Cherevach,I., Chillingworth,T., Cronin,A., Crossett,B., Davis,P., DeShazer,D., Feltwell,T., Fraser,A., Hance,Z., Hauser,H., Holroyd,S., Jagels,K., Keith,K.E., Maddison,M., Moule,S., Price,C., Quail,M.A., Rabbinowitsch,E., Rutherford,K., Sanders,M., Simmonds,M., Songsivilai,S., Stevens,K., Tumapa,S., Vesaratchavest,M., Whitehead,S., Yeats,C., Barrell,B.G., Oyston,P.C. and Parkhill,J. (2004) Proc. Natl. Acad. Sci. U.S.A. 101 (39), 14240-14245
2] ISfinder annotation (2009).
2] ISfinder annotation (2009).