ISMdi17
- Family IS5
- Group IS1031
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| ND | Methylobacterium dichloromethanicum | Methylobacterium dichloromethanicum DM4 |
DNA section
IS Length : 888 bp
Ends
IR Length : 15/18
IRL : GACCCCGTTTCATAACGGGCTTTCGGACGGTTGTTTGGAGCGAGCGGGGA
IRR : GAACCCGTTTCATAAGGTTTGAGCGAGGCGTCTGACGAGGATCATTGCAG
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| TCAACGTC | TCA | CGCCTGAG | 3 |
DNA sequence
GACCCCGTTTCATAACGGGCTTTCGGACGGTTGTTTGGAGCGAGCGGGGAGCATCGTCAGCGTTGGGAAAGTGTCTGACGCTCACCCTGGAAGCCGATGT
GGACACCCGCCGCCCGTGCCGAGCTTGCGCGCGAGAGCCTGCCTTATGCAAGCAGCCTGACCGATGCCGAGTGGGCGCTCATCGCCCCGCATTTGCCTCG
CCCGTCCCACACCGGCCGTCCGTGGCGCTGGCCGCTGCGGGCGATCCTGGACGGTATCCAGTACGTCCTGCGCACCGGCTGCGCTTGGCGGCATCTGCCG
CTGGACTTCCCGCCCTGGTCCACCGTTCACCGCTGGTTCCTGCGCCTGTCGAACGCGGGCGTGTTCGAGCGCCTCGCTCATGCCCACCCCCTGGCCGATC
GCGAGCGGGTCGGACGTGAGGCCAGCCCGGCTGGCGTCGGCGTTGCGGGCGAGCGCGGCTACGATCCGGCCCGGCGCGTGGTCGGGCGCAAGCGCCACGC
GCTCACCGATACCGACGGCCGCCTGCTCCTGGCCACCGTCTCGACAGCGGAGCGGCACGACAGCCATGGTGGGGTTGCGCTCCTGCGGGCGTCCCGTCGG
CTCTGGCCGTTCCTGGCCCACTGCTTCGCCGATCAGGCTTATCAGGGCGAGCGCGTCGGCTCCGCCACCGCCATCACCGTCGAGATCCTCAGGCCGGACA
AGGGCCAAAAGGGCTTCGCCGTGCAGCCTCGACGCTGGGTCATCGAGCGCACCTTCGGTTGGATCGCGCGCTGCCGAAGGCGAGCCCGAGACTACGAGGC
AACACCGTCCTCCACGATCGCCTTCTTCGTCCTCGCCGCTGCAATGATCCTCGTCAGACGCCTCGCTCAAACCTTATGAAACGGGTTC
GGACACCCGCCGCCCGTGCCGAGCTTGCGCGCGAGAGCCTGCCTTATGCAAGCAGCCTGACCGATGCCGAGTGGGCGCTCATCGCCCCGCATTTGCCTCG
CCCGTCCCACACCGGCCGTCCGTGGCGCTGGCCGCTGCGGGCGATCCTGGACGGTATCCAGTACGTCCTGCGCACCGGCTGCGCTTGGCGGCATCTGCCG
CTGGACTTCCCGCCCTGGTCCACCGTTCACCGCTGGTTCCTGCGCCTGTCGAACGCGGGCGTGTTCGAGCGCCTCGCTCATGCCCACCCCCTGGCCGATC
GCGAGCGGGTCGGACGTGAGGCCAGCCCGGCTGGCGTCGGCGTTGCGGGCGAGCGCGGCTACGATCCGGCCCGGCGCGTGGTCGGGCGCAAGCGCCACGC
GCTCACCGATACCGACGGCCGCCTGCTCCTGGCCACCGTCTCGACAGCGGAGCGGCACGACAGCCATGGTGGGGTTGCGCTCCTGCGGGCGTCCCGTCGG
CTCTGGCCGTTCCTGGCCCACTGCTTCGCCGATCAGGCTTATCAGGGCGAGCGCGTCGGCTCCGCCACCGCCATCACCGTCGAGATCCTCAGGCCGGACA
AGGGCCAAAAGGGCTTCGCCGTGCAGCCTCGACGCTGGGTCATCGAGCGCACCTTCGGTTGGATCGCGCGCTGCCGAAGGCGAGCCCGAGACTACGAGGC
AACACCGTCCTCCACGATCGCCTTCTTCGTCCTCGCCGCTGCAATGATCCTCGTCAGACGCCTCGCTCAAACCTTATGAAACGGGTTC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 783 bp | 260 aa | 97 | 879 | + | No |
Chemistry : DDE
ORF sequence :
MWTPAARAELARESLPYASSLTDAEWALIAPHLPRPSHTGRPWRWPLRAILDGIQYVLRTGCAWRHLPLDFPPWSTVHRWFLRLSNAGVFERLAHAHPLA
DRERVGREASPAGVGVAGERGYDPARRVVGRKRHALTDTDGRLLLATVSTAERHDSHGGVALLRASRRLWPFLAHCFADQAYQGERVGSATAITVEILRP
DKGQKGFAVQPRRWVIERTFGWIARCRRRARDYEATPSSTIAFFVLAAAMILVRRLAQTL
DRERVGREASPAGVGVAGERGYDPARRVVGRKRHALTDTDGRLLLATVSTAERHDSHGGVALLRASRRLWPFLAHCFADQAYQGERVGSATAITVEILRP
DKGQKGFAVQPRRWVIERTFGWIARCRRRARDYEATPSSTIAFFVLAAAMILVRRLAQTL
Blast result :
Comments
ISMdi17 is 64% aa similar to ISMex40.
References
1] Stephane Vuilleumier et.al. Methylobacterium genome sequences: a reference blueprint to investigate microbial metabolism of C1 compounds from natural and industrial sources. (2009) PLoS ONE Submitted.