ISMex26

  • Family ISL3
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Methylobacterium extorquens
Methylobacterium extorquens AM1
DNA section
IS Length : 1676 bp

Ends


IR Length : 31/42

IRL : GGGGTCAAAGTTGGGCTCTGACTCACTTTCGGTGCAGGCGGGTTGATGGA
IRR : GGCGTGCAACTTTGGGTCTGGCGCACTCTTGATGCAGGCGGCGTCACCCA

Insertion site


Left flankDirect repeatRight flankDR Length
ATTGGACGCCGATCCCCCGCCTCAAGAAACACACCCATGGGTG0

DNA sequence

GGGGTCAAAGTTGGGCTCTGACTCACTTTCGGTGCAGGCGGGTTGATGGATCTCGGCTTCAGCCGTCGGAGATCCGGCCATGCCCCGCAGCCTTCATCTC
GGTTCTGTCGTTCCGCCCGGCCTTGTCGTCGATCACATCGAGGTGGGGGCGGGTCTGACCATCACCGCTCGGCCGACCGCCGCGTCGGCCCGGTGTCCGA
GGTGTGACGGGATCTCGTCCCGTGTGCACAGCCGGTACATCCGCACCCTATCGGATCTGCCGGTCGCTGGCCGACGCGTCGTAATCACGATCAGCGTCCG
CCGCTTCCGGTGCGTCGGAACGGAATGCCGGACGAAGGTCTTCGCCGAGCGGCTCGAACCGGACCTCGCCGCCGCCTACGCCCGACGAACAGGACGGTTG
GAGACCATCGTCCATCATCTCGGCCTCGCGCTCGGTGGCAGGCCGGCGGAGAGCTTCGCCCGCCGACTGATGGTGCCGGCGAGCCGGGACACGATGCTGC
GAACCGTGCGCCGACGCGCCCAGAGGCCGGCCGAGACCCTGACCGTGATCGGCATCGACGATTGGGCCTTCCGCCGTGGGCAACGCTACGGCACGCTGAT
CTGCGACCTGGAGCGGCGGCGCGTCGTCGCCCTCCTGCCGGATCGCGAGAGCGGCACCATCGAGGCATGGCTCACCGCCCATCCCGAGATCGCCGTCCTC
GCACGGGACCGCGGCGGCGGCTACGGCGAGGCCGCGGCGCGGGCGTTGCCCACGACGATCCAGGTCGCCGACCGCTGGCATCTGATGGAGAACGCCAGCG
CCGCCTTCCTCAATGCCGTGCGCAAGTCGATGACCGCCATCCGAGTCGCGGTGGGCGCCGCCACGATCGACCCCAATCGGCTGACCTGCGCCGAGCGCCT
GCAATACGAGGGCTACCGTCGGCGCACGGCGACTGCCAAGGCGATACGGACGCTGTCGCGACAGGGCATGCCGATCCGGCAGATCGTCTGCACGACCGGC
CACAGCCGCAGGCTCGTGCGCCACGTGTTGCGCGGCCTGACCGATGACGTGTTCCGGGCGCGCCAGAGCAGCCTGGAGTCCTACCTGCCCCGGCTCGACG
ACGAGTGGGCGGCCGGCTGCTGCAACGGTGCCGAACTCTGGCGACGCCTGCGCGCCGGCGGGTTCACTGGCAGCCTCCGCGTCGTTGGAGAGTGGGCGAC
CCGCCGTCGGCGCCATGAGCAGTCCCCCGCGGGTGCTCCCGGCAAGGTACCCTCTGCGCGCCTCCTCGCGCGACTGATGACGACCGGGCGGGATGGCCTG
AGCAAGGCCGAGGCCGTGACGGTGACGACGATCGAGGCAGCGGTACCAGCGCTCGACGAGGCGCGCTCTCTCCTGGCCGGCTTCCAGGCCATGATCCGCG
AGCGGAGAACACACGACCTCGACACCTGGATCGACACGGCGGCTCGCAGCCTCCTCGCGTCCTTCGCGAACGGCCTGTCGCGAGACAGAAAGGCTGTCGC
CGCGGCGCTGGCCGAGCCCTGGTCGAATGGCCAGACCGAGGGGCAGATCACTCGCCTCAAGCTCGTGAAGCGACAGATGTTCGGTCGGGCCAAGCTCGAT
CTGCTCGAAGCGCGGCTGATCGGCGTTGGGTGACGCCGCCTGCATCAAGAGTGCGCCAGACCCAAAGTTGCACGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1554 bp517 aa801633+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MPRSLHLGSVVPPGLVVDHIEVGAGLTITARPTAASARCPRCDGISSRVHSRYIRTLSDLPVAGRRVVITISVRRFRCVGTECRTKVFAERLEPDLAAAY
ARRTGRLETIVHHLGLALGGRPAESFARRLMVPASRDTMLRTVRRRAQRPAETLTVIGIDDWAFRRGQRYGTLICDLERRRVVALLPDRESGTIEAWLTA
HPEIAVLARDRGGGYGEAAARALPTTIQVADRWHLMENASAAFLNAVRKSMTAIRVAVGAATIDPNRLTCAERLQYEGYRRRTATAKAIRTLSRQGMPIR
QIVCTTGHSRRLVRHVLRGLTDDVFRARQSSLESYLPRLDDEWAAGCCNGAELWRRLRAGGFTGSLRVVGEWATRRRRHEQSPAGAPGKVPSARLLARLM
TTGRDGLSKAEAVTVTTIEAAVPALDEARSLLAGFQAMIRERRTHDLDTWIDTAARSLLASFANGLSRDRKAVAAALAEPWSNGQTEGQITRLKLVKRQM
FGRAKLDLLEARLIGVG

 

Blast result :
Comments
ISMex26 is 72% aa similar to ISMex24.
References
1] Stephane Vuilleumier et.al. Methylobacterium genome sequences: a reference blueprint to investigate microbial metabolism of C1 compounds from natural and industrial sources. (2009) PLoS ONE Submitted.