ISMdi25

  • Family IS30
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Methylobacterium dichloromethanicum
Methylobacterium dichloromethanicum DM4
DNA section
IS Length : 1601 bp

Ends


IR Length : 18/30

IRL : CGTAGCGCAGCAGGAGCATCGGCGCCGGTTCTGGGCGATGATCGCGTCAG
IRR : CGTACCGATTCCTGAGGATCGCCACGCGTGGCGCACCAAGCGCCAGCCGC

Insertion site


Left flankDirect repeatRight flankDR Length
CCCGGGCGACCGCCCGCGCTCGGA4

DNA sequence

CGTAGCGCAGCAGGAGCATCGGCGCCGGTTCTGGGCGATGATCGCGTCAGGTCTGTCGAGCGAGGACGCTGCGATGGGATGCGGGATTTCTCAACCGGTC
GGTACCCGCTGGTTTCGGGAGGCGGGCGGGATGGCGCCCTCGCATCTCAGGCCATCGTCGCCCCCGTCCTCGGAACGCTACCTCTCGTTTGCCGAGCGTG
AGGAGATCGCGCTGCTGCGGGCGCAAGGCCACGGGGTTCGAGACGTCGCGCGTCGCCTGGGGCGAGCGGCCTCGACCATCTCGTGGGAGTTGCGACGGAA
CGCGGCGACGCGCAACGGCAATCTGGACTACCGCGCCTCGACCGCGCAGTGGCATTCCGAGCGCTCGGCCCGTCGGCCGAAGCCGTCGAAGCTGGCCGCG
AACGCAACTCTGCGGACGTACGTACAGGATCGGCTCGCCGGCGCCGTTGTCGCTCCAGGCGGAGCCATCCTGCCGGGTCCCTCCGTGCCCTGGAAAGGGC
GGCGGCACGGGCGACGTCAGCACCGGCGCTGGGCTATGGCTTGGAGCCCGCAGCAGATTGCCGAGCGCCTGCGGCTCGACTTTCCAGACGACACGACAAT
GCGCGTCAGTCATGAGGCGATCTACCAAGCTCTCTACGTCCAGGGCCGAGGTGCGTTGAAGCGTGAACTGACCGCATGCCTGCGCACGGGCCGAGCTTTG
CGGGTGCCGCAGGCACGGAGTTGCCGACGGGGCAAATCGTTCGTCACCCCCGAGGTCTTGATCAGCGAGCGGCCGTCCGAGGCGCAGGATCGCGCCGTGC
CGGGACACTGGGAAGGCGACCTGATTCTCGGGCTGCGCAGTTCGGCGATCGGTACGCTGGTCGAGCGCACGACGCGGTTCACGATGCTGCTGCATCTTCC
ACCGATGGAAGGCCACGGTGTAGCGCCGCGTGAGAAGAATGGGCCGGCGCTGGCGGGTCACGGTGCCGAGGCGGTGCGCGACGCGATCGCCCGCACGATC
ACGAGCCTGCCGGACCAACTGCGGCGCTCATTGACCTGGGACCAGGGGGCTGAGATGGCCGAGCACGCTCGACTACGGATCGATACGGGATTGCAGGTCT
ACTTCTGCGATCCACGCTCGCCCTGGCAGCGGGGTACGAACGAGAACACCAACGGTCTGCTGCGCCAGTACTTCCCAAAGGGGACCGACCTCGGCGCCCA
CAGCCCAGCCGATCTCGCGGCCGTCGCTTCGGCGCTCAACGGTAGACCGCGCAAGACGCTTGGATGGAAAACGCCCGCCGAGGCTCTCGACGCGGTCCTA
CGATCTGGTCATGCTGGTGTTGCGACGACCAGTTGAACCTGGGCAGGATAACATCGCGTTATTGATGACCCAAGGCGCGCTCAGCCGGTCGCAACGCAGG
CCGGCGATGAAAGTCTGCGTGCCCCCGTGCCCGAACGGCGCCTTGGCGTGCAGCCGGCGCCCCCTGCGGCTGCGCCCGCGCAGGCGGGTCATCTTGGTGG
TGACGGAGGTCTCGTCGAGGAAGACGAGGCGATGACAGGCCTCTCGCATCAGCGGCTGGCGCTTGGTGCGCCACGCGTGGCGATCCTCAGGAATCGGTAC
G
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1206 bp401 aa1311336+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MAPSHLRPSSPPSSERYLSFAEREEIALLRAQGHGVRDVARRLGRAASTISWELRRNAATRNGNLDYRASTAQWHSERSARRPKPSKLAANATLRTYVQD
RLAGAVVAPGGAILPGPSVPWKGRRHGRRQHRRWAMAWSPQQIAERLRLDFPDDTTMRVSHEAIYQALYVQGRGALKRELTACLRTGRALRVPQARSCRR
GKSFVTPEVLISERPSEAQDRAVPGHWEGDLILGLRSSAIGTLVERTTRFTMLLHLPPMEGHGVAPREKNGPALAGHGAEAVRDAIARTITSLPDQLRRS
LTWDQGAEMAEHARLRIDTGLQVYFCDPRSPWQRGTNENTNGLLRQYFPKGTDLGAHSPADLAAVASALNGRPRKTLGWKTPAEALDAVLRSGHAGVATT
S

 

Blast result :
Comments
ISMdi25 is 78% aa similar to ISMsm8.
References
1] Stephane Vuilleumier et.al. Methylobacterium genome sequences: a reference blueprint to investigate microbial metabolism of C1 compounds from natural and industrial sources. (2009) PLoS ONE Submitted.