ISMdi11

  • Family IS481
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Methylobacterium dichloromethanicum
Methylobacterium dichloromethanicum DM4
DNA section
IS Length : 1053 bp

Ends


IR Length : 20/26

IRL : TGTTTGGTCCCGTTGTGTGGTGGTACGTCTGACCCCGCATGGAGGGACGC
IRR : TGTTCGGTCCCATGGTGTGATGTGACTGATCGGTTTTGAACCGAGCGAGC

Insertion site


Left flankDirect repeatRight flankDR Length
GGCCACTAGGCCGCACGGCA0

DNA sequence

TGTTTGGTCCCGTTGTGTGGTGGTACGTCTGACCCCGCATGGAGGGACGCGCTATGGGCCAGCTTCTTCACGGCAGCGCCACGACGACTGAGGCGGTCCG
TCGGGCAATCTAAGCTCGTCAAGAGAGCGTGAGAGCCGCCGCAAAGCGGCACGGCATCAGCCCGACTAAAGTGCAGAAGTGGCGTGGCCGCGAGACGGTC
ACGGACGCCCGGATGGGGCCGAAGGAGATCCGCTCGACCGTGCTGACGCTGGAGGAGGAGGCGATTATCGTCGCGTTCCGGCGGCATACGCTCCTACCGC
TGGGTGATTGCCTTTACGCGCTGCAGCCGACGAGTCTGCACCTGCGCCGGTCGAGCCTGCATCGCTGCTTCCAGCGCCACGACATCGCCCGGTTGCCCGA
TACCGATGGCGACAAGCCCAAGCGTTCACGCTTTGAAGCTTACACGATCGGTTATTTCCGCATCGACATCGCGCAGGTCAGCACAGAAGAGGGCAAGCTG
AACCTGTTCGTGGCCATCGACCGAACCAGCAAGTTCGCCTTCGTCCAACTGCACGAGAAGGCGACACGACGTGTAGCGGCAGACTTTCTTCGCGCGCTGA
TCGCGGCCGTGCCCTACACGGTCCACACGGTGCTCACCGACGACGGCACGCAGTTCGTCGACACCACACCGGTCAGCGAGGAAGCCGAGGCAAACGCGGA
AGCCTATTGGGCCGAGCGCGACGAGCCGCGCCTCTACCGGTGGCATCCGTTCGATTGGGCTTGCAACCAAAACAAGGTCGAGCATCGAACGACCAAACCA
CGCTGCCCGTGGACGAACGGTCAGGTCGAGCGCATGAACCGAACGATCAACGACGCCACCGTCAAGCGCTACCACTACGGCAGCCACGACGCCCTGCGTC
CTCACCTGCTGCTCTTCGTCGACGCCTACAATTACAGACGCCGGCTCAAGACCCTGCGCGGCCTCACGCCCTACGAGTTCGTCTGCAAAACCTGGACTGA
GCAGCTCGCTCGGTTCAAAACCGATCAGTCACATCACACCATGGGACCGAACA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
924 bp308 aa1291052+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

VRAAAKRHGISPTKVQKWRGRETVTDARMGPKEIRSTVLTLEEEAIIVAFRRHTLLPLGDCLYALQPTSLHLRRSSLHRCFQRHDIARLPDTDGDKPKRS
RFEAYTIGYFRIDIAQVSTEEGKLNLFVAIDRTSKFAFVQLHEKATRRVAADFLRALIAAVPYTVHTVLTDDGTQFVDTTPVSEEAEANAEAYWAERDEP
RLYRWHPFDWACNQNKVEHRTTKPRCPWTNGQVERMNRTINDATVKRYHYGSHDALRPHLLLFVDAYNYRRRLKTLRGLTPYEFVCKTWTEQLARFKTDQ
SHHTMGPN

 

Blast result :
Comments
ISMdi11 is 75% aa similar to ISGdi9.
The transposase is shorter (25 aa less) of the other member of IS481 family.
There is no stop codon at the end of the element, the transposase use the first STOP codon after the end of the IRR.
The transposase in the database is cut at the end of the IS.
References