ISMdi28

  • Family IS701
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Methylobacterium dichloromethanicum
Methylobacterium dichloromethanicum DM4
DNA section
IS Length : 1410 bp

Ends


IR Length : 19

IRL : TAGTACTACAGCCGGGTTTGTGCGTTGTCATGGTGGAGGTGTGCCATGAC
IRR : TAGTACTACAGCCGGGTTTTGGTTGGCTTACGTGTTTTGGTTGGTCGTTT

Insertion site


Left flankDirect repeatRight flankDR Length
ATTCTGTAGCAAAAGCACGC0

DNA sequence

TAGTACTACAGCCGGGTTTGTGCGTTGTCATGGTGGAGGTGTGCCATGACGAGGGTGACGCGAGCGGATGTGGCGGACTGGGCGCAGGGCCTCGAAGAGG
TTCTGGAGCGGATCGCCGTCCGCTTTGGGCGGGCCGAGCCGCGTCGGCGGGCGGGGGCCTATCTTCGGGGTCTGCTGGCACCGGTGGAGCGCAAGAACGG
CTGGCAACTGGCGGAGGCGGCGGGCGACGCGAGCCCGGACGGGGTGCAGGAGTTCCTGAGCCGCGTGCGCTGGGATGCGGATGCCGTGCGCGACGACCTG
CAGGGCTACGTGGCCGAGCATCTGGGCGATCCGAACGCGGTGCTGGTGCTCGACGAGACGGGCTTCCTGAAGAAGGGGGTCAATTCGGCCGGCGTACAGC
GCCAGTACACCGGCACGGCCGGGCGGATCGAGAACGCGCAGGTCGGGGTGTTCCTCGGCTATGCCGGGCGCCACGGCCACGCGCTGATCGACCGGGCGCT
GTACCTGCCCAGGTCGTGGACGGACGACCGCGCACGCTGCCGGGCCGCGCATGTGCCCGATGACGTGCCCTTCGCGACCAAGCCGGCGCTGGGCCTTGCC
ATGCTGGAACGGGCGCGCGCGGCCAAACTGCCGTTTGCCTGGATCGCGGGCGACAGCGTCTACGGAGGCGACCGCGCCATCCGCCGCTGGGCGGAAGATC
ACCGGATCGGCTACGTGCTGACGGTCACGTCGGGCCAGCGGCTGGCCATGCGCCCGGTCGCGGAGTGGTTGGCCGATCAGGTCGAGGCGCGGCCCGAGGA
CGCCCCGTCCGTCTGGCAGCGCCTGAGCGCGGGCGACGGCGCCAAGGGGCCGCGCCTCTACGACTGGGCCTGTCTGCCCTATCGCGGCGCGGCACCCGGC
TTCCAGTGCGCGCTTCTGGTACGCCGTTCCCTGGCCGATCCGGACGAGACGACCTTCTACCTGACCCACGCACCGACCGGCACGCCGCTCGCCGACCTCG
TGCGGATCGCAGGCCAGCGTTGGACCATCGAGAGCAACTTCGAGCAGGCCAAGGGTGAGGTCGGGCTCGACCACTACGAGGTCCGCTCGTATCCCGGCTG
GCACCGGCACGTCACCCTGGCGATGCTCGCCCACGCCTACCTCGCCGTCCTGCGCAGGACGGCCATCGGGGGGCGGGGTCACCACGGACCGCGCCCTCGA
CCTCCTGCCGCTGACCGTGCCCGAGATCCGGCATCTGCTGGCCGCTCTCGTCGGCCTGCCTCCGCCCGACACCGCCGTGGTCCTGCGCTGGTCCGTCTGG
CGAAGGCGCCATCAGCAGCGGGCAAGACGCGCTCATTGGCACCGTCGGACCCGAATGCCCAAACGACCAACCAAAACACGTAAGCCAACCAAAACCCGGC
TGTAGTACTA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1359 bp452 aa251383+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

LSWWRCAMTRVTRADVADWAQGLEEVLERIAVRFGRAEPRRRAGAYLRGLLAPVERKNGWQLAEAAGDASPDGVQEFLSRVRWDADAVRDDLQGYVAEHL
GDPNAVLVLDETGFLKKGVNSAGVQRQYTGTAGRIENAQVGVFLGYAGRHGHALIDRALYLPRSWTDDRARCRAAHVPDDVPFATKPALGLAMLERARAA
KLPFAWIAGDSVYGGDRAIRRWAEDHRIGYVLTVTSGQRLAMRPVAEWLADQVEARPEDAPSVWQRLSAGDGAKGPRLYDWACLPYRGAAPGFQCALLVR
RSLADPDETTFYLTHAPTGTPLADLVRIAGQRWTIESNFEQAKGEVGLDHYEVRSYPGWHRHVTLAMLAHAYLAVLRRTAIGGRGHHGPRPRPPAADRAR
DPASAGRSRRPASARHRRGPALVRLAKAPSAAGKTRSLAPSDPNAQTTNQNT

 

Blast result :
Comments
ISMdi28 is 67% aa similar to ISAzo35.
References
1] Stephane Vuilleumier et.al. Methylobacterium genome sequences: a reference blueprint to investigate microbial metabolism of C1 compounds from natural and industrial sources. (2009) PLoS ONE Submitted.