ISMdi6
- Family IS1182
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| ND | Methylobacterium dichloromethanicum | Methylobacterium dichloromethanicum DM4 |
DNA section
IS Length : 1466 bp
Ends
IR Length : 15/16
IRL : GAGCCTGTCCGAGTAATCCTCTCGACGACGAGGCTGCGGGGTGATTCACT
IRR : GAGCCCGTCCGAGTAACGGGTTCGCGTGTCGAGATTGGCATGGGGATTTC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GGATCAAACAC | CTAG | GCCTTGTTCGT | 4 |
DNA sequence
GAGCCTGTCCGAGTAATCCTCTCGACGACGAGGCTGCGGGGTGATTCACTCGGCTCATGGCCAAGGTGTTTCGCTCCTGGAACGTCGATCAGGGTTGGCT
GCTGCCGCCCTCGCTGCACGAGTTCGTGCCACCCGGGCACATGGCGCACTTCGTCCGCGATACGGTGCGAGAGGCGCTCGACCTCTCGGCCATTCTCGAC
ACCTACACGGAGGAGCGCGGCTACCCGCCCTACCATCCCGGCATGATGGTGGCCCTGGTTCTCTACGGCTACAGCCGCGGCCTGTACTCGTCGCGTCAGC
TCGCCCGGGCCTGCGAGGAGCGGGTCGATGTCATGGCGGTGACCGGCCTGAACCGCCCGGACTTCCGCACCATCGCCGACTTCCGCAAGCGCCACCTTGT
GGCCCTGTCGGACCTGTTCGTGCAGGTGCTGCGGCTGTGTCGGGCGGCCGGTTTGGTCGAGTTTGCTCACGTGGCGGTGGATGGCACCAAGCTGAAGGCC
AACGCCTCGCGCCACAAAGCGATGAGCTACGGGCGGATGAAGACGGCCGAGCCCGTCTTGGCCGCCGAGGTCCAAGCGTGGCTGGAACGGGCGCGCGAGG
CTGACGCGGCCGAGGATCAGGCTCACGGCGTGGACCGGCGCGGCGACGAGACGCCGGACTGGATGGCCGATAAGCAGCGACGGCTGGAAGCCATCCGCGC
CGCCAAGGCCGCGCTGGAAGCGGAGGCGGCCGACCCGCCCGATCCGGAGGACGAGAACGGGCCGGGTGCCTCGTCGGGCATGCGTTGGCAGGGTCGGCCA
CTGCGCGGGGAAGATGGCGGTCCGCCAGACCGGGCGCAGCGCAACTTCACCGACCCGGACAGCCGGATCCTGCCTACGCGTGATGGCTTCGTGCAGGGCT
ACAACGGTCAGATCGCGGTCGATGCCGCGCATCAGGTGATCCTCGCGCACCGCCTCGTGACCAACTCGGCCGACTACCGCGCTCTCGTGCCACTTGTGGA
CGGGGTCCGCGCCCATCTCGGGCGAAAGCCGCGGGAGGTCTCGGGCGATGCCGGCTTTGCCAACGAGGCGAACCTCGTTGCGCTCCAGGAGCGGGGTATC
ACGGGCTACCTTGCTCCGGGCCGGGCGCGTCATGGCGAGGCGGACGCGGCCGGCCGTCGGAGGCTGACCAAGATGCCGTTGATGAGCGCGATGGCTGCCC
GCCTGAAGCGGGCTGGCCGCCGTAGCCGCTACCGCCTCAGAAAGCAGGTGGTCGAACCCGTGTTCGGGCAAATCAAGCAGGCCAGAGGCTTCCGACAGTT
CCTGCTCCGCGGTCTCGATCAAGTCCGGAGCGAATGGGCGATGATCTGCACCGCCCATAACCTCCTGAAACTGGCACAGGCCAGGAGTTAAACCCGCAGC
AAACCATCTGACCGTCGAAATCCCCATGCCAATCTCGACACGCGAACCCGTTACTCGGACGGGCTC
GCTGCCGCCCTCGCTGCACGAGTTCGTGCCACCCGGGCACATGGCGCACTTCGTCCGCGATACGGTGCGAGAGGCGCTCGACCTCTCGGCCATTCTCGAC
ACCTACACGGAGGAGCGCGGCTACCCGCCCTACCATCCCGGCATGATGGTGGCCCTGGTTCTCTACGGCTACAGCCGCGGCCTGTACTCGTCGCGTCAGC
TCGCCCGGGCCTGCGAGGAGCGGGTCGATGTCATGGCGGTGACCGGCCTGAACCGCCCGGACTTCCGCACCATCGCCGACTTCCGCAAGCGCCACCTTGT
GGCCCTGTCGGACCTGTTCGTGCAGGTGCTGCGGCTGTGTCGGGCGGCCGGTTTGGTCGAGTTTGCTCACGTGGCGGTGGATGGCACCAAGCTGAAGGCC
AACGCCTCGCGCCACAAAGCGATGAGCTACGGGCGGATGAAGACGGCCGAGCCCGTCTTGGCCGCCGAGGTCCAAGCGTGGCTGGAACGGGCGCGCGAGG
CTGACGCGGCCGAGGATCAGGCTCACGGCGTGGACCGGCGCGGCGACGAGACGCCGGACTGGATGGCCGATAAGCAGCGACGGCTGGAAGCCATCCGCGC
CGCCAAGGCCGCGCTGGAAGCGGAGGCGGCCGACCCGCCCGATCCGGAGGACGAGAACGGGCCGGGTGCCTCGTCGGGCATGCGTTGGCAGGGTCGGCCA
CTGCGCGGGGAAGATGGCGGTCCGCCAGACCGGGCGCAGCGCAACTTCACCGACCCGGACAGCCGGATCCTGCCTACGCGTGATGGCTTCGTGCAGGGCT
ACAACGGTCAGATCGCGGTCGATGCCGCGCATCAGGTGATCCTCGCGCACCGCCTCGTGACCAACTCGGCCGACTACCGCGCTCTCGTGCCACTTGTGGA
CGGGGTCCGCGCCCATCTCGGGCGAAAGCCGCGGGAGGTCTCGGGCGATGCCGGCTTTGCCAACGAGGCGAACCTCGTTGCGCTCCAGGAGCGGGGTATC
ACGGGCTACCTTGCTCCGGGCCGGGCGCGTCATGGCGAGGCGGACGCGGCCGGCCGTCGGAGGCTGACCAAGATGCCGTTGATGAGCGCGATGGCTGCCC
GCCTGAAGCGGGCTGGCCGCCGTAGCCGCTACCGCCTCAGAAAGCAGGTGGTCGAACCCGTGTTCGGGCAAATCAAGCAGGCCAGAGGCTTCCGACAGTT
CCTGCTCCGCGGTCTCGATCAAGTCCGGAGCGAATGGGCGATGATCTGCACCGCCCATAACCTCCTGAAACTGGCACAGGCCAGGAGTTAAACCCGCAGC
AAACCATCTGACCGTCGAAATCCCCATGCCAATCTCGACACGCGAACCCGTTACTCGGACGGGCTC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1335 bp | 444 aa | 57 | 1391 | + | No |
Chemistry : DDE
ORF sequence :
MAKVFRSWNVDQGWLLPPSLHEFVPPGHMAHFVRDTVREALDLSAILDTYTEERGYPPYHPGMMVALVLYGYSRGLYSSRQLARACEERVDVMAVTGLNR
PDFRTIADFRKRHLVALSDLFVQVLRLCRAAGLVEFAHVAVDGTKLKANASRHKAMSYGRMKTAEPVLAAEVQAWLERAREADAAEDQAHGVDRRGDETP
DWMADKQRRLEAIRAAKAALEAEAADPPDPEDENGPGASSGMRWQGRPLRGEDGGPPDRAQRNFTDPDSRILPTRDGFVQGYNGQIAVDAAHQVILAHRL
VTNSADYRALVPLVDGVRAHLGRKPREVSGDAGFANEANLVALQERGITGYLAPGRARHGEADAAGRRRLTKMPLMSAMAARLKRAGRRSRYRLRKQVVE
PVFGQIKQARGFRQFLLRGLDQVRSEWAMICTAHNLLKLAQARS
PDFRTIADFRKRHLVALSDLFVQVLRLCRAAGLVEFAHVAVDGTKLKANASRHKAMSYGRMKTAEPVLAAEVQAWLERAREADAAEDQAHGVDRRGDETP
DWMADKQRRLEAIRAAKAALEAEAADPPDPEDENGPGASSGMRWQGRPLRGEDGGPPDRAQRNFTDPDSRILPTRDGFVQGYNGQIAVDAAHQVILAHRL
VTNSADYRALVPLVDGVRAHLGRKPREVSGDAGFANEANLVALQERGITGYLAPGRARHGEADAAGRRRLTKMPLMSAMAARLKRAGRRSRYRLRKQVVE
PVFGQIKQARGFRQFLLRGLDQVRSEWAMICTAHNLLKLAQARS
Blast result :
Comments
ISMdi6 is 59% aa similar to ISKpn6.
References
1] Stephane Vuilleumier et.al. Methylobacterium genome sequences: a reference blueprint to investigate microbial metabolism of C1 compounds from natural and industrial sources. (2009) PLoS ONE Submitted.