ISMdi2

  • Family ISL3
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Methylobacterium dichloromethanicum
Methylobacterium dichloromethanicum DM4
DNA section
IS Length : 1689 bp

Ends


IR Length : 25

IRL : GGTTCTTCCGCACTTTCGGTGCTGAGCGGTGGTTTGGGCGTTGAATCGCA
IRR : GGTTCTTCCGCACTTTCGGTGCTGAAGGCTTGGCGTCCGATCAAGCCTTG

Insertion site


Left flankDirect repeatRight flankDR Length
CGTCCAATTCTAATGTTCAACG0

DNA sequence

GGTTCTTCCGCACTTTCGGTGCTGAGCGGTGGTTTGGGCGTTGAATCGCATGGTGGCCCGAGGGCAGCGCGATGCCAATCTCGAACCCGTCGATGCCGTC
GGTCCCGGACGGCCTACACGTCGATGACCTGACGCTGGATGAAACGGGGTTGCTGATCACCGCCCGGACCACAGCGGCCCAGGCGTCCTGTCGGGTCTGC
GGGCGTGCTTCGGCGCGGGTGCACAGCCGGTATTGGCGGACGTTCAAGGACCTGCCCTGGCAGGACCGGTCGGTGACGTGGCGGGTGCAGGTCCGCCGCT
TCCGCTGCGGCCATTGCCCGGGGCGGATCTTCGCCGAACGCGTGCCGGGGCTCGGCACGCGCAAGTCGCGCCGCAGCGACCGGTTGGCTGAGGCGCAGAC
CGACATCGGCATGGTGCTGGGTGGTGAGGCCGGCGCAAGGTTGTCGCGGCGGCTGGCCATGCCTGTCAGTGGCGACACCGTCCTGCGCTTGATCCGTCGT
CGCGGGACCGTACCGTCTCCGCCGCCGCGGGTGGTCGGCATCGACGATTGGGCATGGCGGCGCGGCCGGTCCTACGGCACCATCGTGTGCGACCTGGAGC
GGCGGCGCGTCATCGACCTGTTGCCCGGCCGCTCGTCGGCACCGGTGCGGGATTGGCTCGCTGCCCATCCGAGCGTGACCGTGGTCAGCCGCGACCGCTC
GGGGCCCTATGCCGAGGCTGCGCGTACGGGAGCGCCGACGGCGACGCAGGTCGCGGATCGCTGGCACCTGCTCGTCAACGCATCCGAGGCGCTGCGCGGC
GCGGTCGAGCGACACCAGCTGGAGATCCGGAGCGTGGCCCACCGCGCCGTGAAGGATCCCCCTGCCTCCCTGGGCCTGAGGGAGACCGCAGCCAAGCCGG
AGGTGACAAGCCGACGACGTGATCGCTGTGAGGCGGCCCTGTGCCTCCACGGCGAAGGTCTGCCGACCAAGGAGATTGCTCGCCGTCTCGGCGCGTCCCG
CAACGCCGTGCGCCGCTGGGTGCGGGCAGGCCGGTTCGTGCCCTACCGCCGCGCACCGGGTTCAAGCCGGCTCGACCGCTATCTCCCCTTCGTCGAGGCC
CGCTGGCAGGAAGGCCAGCACAGCGCCACCGCGCTTTGCCAGGAGTTGCACGCACAAGGCTTCACGGGTGGCTACGACATCGTCCGGCGCTGGGCTGCGC
GTCGGAAGCGAGGGGCACCGGCTCGACCACCGTCCACTCGGATCCCCTCGACGCGCCGCATCACCCGGTGGCTCACGGGCGACCCAGCTGCACTGTCGCC
AGAGGATCGCGCCTTCACCGAAGCGCTCTGCAGCGCCGCGCCGAGGCTGAGCCAAGCAGCCGAGGTTATCCGCGCCTTCGCCGATCTTTTGCGCCAAAAC
GATCCCACCGGACTGAAGCCCTGGCTAGAAGCTGCAGCCGCGACCGATCTCGGCGGCTTCGTCACAGGGCTCCGGCAGGACGAGCCAGCCGTGCGCGCCG
CCATCGTCGAGCCCTGGAGCAACGGCCCCGTCGAGGGGCAGGTCAACCGCCTCAAGCTGATCAAACGCAGCATGTATGGTCGAGCCGGATTCGATCTCCT
GCGACAGCGCGTCCTGCATGCTGCATGAGCCGCAATCAGCAAGGCTTGATCGGACGCCAAGCCTTCAGCACCGAAAGTGCGGAAGAACC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1536 bp511 aa931628+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MPSVPDGLHVDDLTLDETGLLITARTTAAQASCRVCGRASARVHSRYWRTFKDLPWQDRSVTWRVQVRRFRCGHCPGRIFAERVPGLGTRKSRRSDRLAE
AQTDIGMVLGGEAGARLSRRLAMPVSGDTVLRLIRRRGTVPSPPPRVVGIDDWAWRRGRSYGTIVCDLERRRVIDLLPGRSSAPVRDWLAAHPSVTVVSR
DRSGPYAEAARTGAPTATQVADRWHLLVNASEALRGAVERHQLEIRSVAHRAVKDPPASLGLRETAAKPEVTSRRRDRCEAALCLHGEGLPTKEIARRLG
ASRNAVRRWVRAGRFVPYRRAPGSSRLDRYLPFVEARWQEGQHSATALCQELHAQGFTGGYDIVRRWAARRKRGAPARPPSTRIPSTRRITRWLTGDPAA
LSPEDRAFTEALCSAAPRLSQAAEVIRAFADLLRQNDPTGLKPWLEAAAATDLGGFVTGLRQDEPAVRAAIVEPWSNGPVEGQVNRLKLIKRSMYGRAGF
DLLRQRVLHAA

 

Blast result :
Comments
ISMdi2 is 59% aa similar to ISAli18.
References
[1] Stephane Vuilleumier et.al. Methylobacterium genome sequences: a reference blueprint to investigate microbial metabolism of C1 compounds from natural and industrial sources. (2009) PLoS ONE Submitted.