ISMex36

  • Family IS1182
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Methylobacterium extorquens
Methylobacterium extorquens AM1
DNA section
IS Length : 1467 bp

Ends


IR Length : 17

IRL : GAGCCCGTCCGAGTAACCCCCTCGACGGCGGGGCCTGGGGGTGATTCACT
IRR : GAGCCCGTCCGAGTAACGAGTTTATGAGGCAGGATGAGTGTCGAAGTCTG

Insertion site


Left flankDirect repeatRight flankDR Length
GGCAGAATACCTAGCCCGTCTTAT4

DNA sequence

GAGCCCGTCCGAGTAACCCCCTCGACGGCGGGGCCTGGGGGTGATTCACTCGGCTCATGGCCAAGGTGTTTCGCTCCTGGGATGTCGATCAGGGCTGGTT
GCTGCCGCCCTCGCTGCACGAGTTCGTGCCGCCCGGGCACATGGCGCACTTCGTCCGCGACACGGTGCGGGAGGCCCTCGACCTTTCGGCCATCCTCGAC
ACCTACAGCGAAGAGCGTGGCTACCCGCCCTACCATCCCGGCATGATGGTGGCGCTCCTGCTCTACGGCTACAGCCGCGGCCTGTACTCCTCGCGTCAGC
TCGCCCGGGCCTGCGAGGAGCGGGTCGACGTCATGGCGGTGACCGGGTTGAACCGCCCGGATTTCCGCACCATCGCCGACTTCCGCAAGCGCCACCTCGT
GGCCTTGTCCGACCTGTTCGTGCAGGTGCTGCGCCTGTGCCGGGCGGCGGGTCTCGTCGAGTTCGCCCACGTGGCAGTGGACGGCACCAAGGTGAAGGCG
AACGCCTCCCGCCACAAGGCGATGAGCTACGGACGCATGAAGACGGCCGAGCCGGCGCTGGCCGCCGAGGTCGATGCCTGGCTGCAGCAAGCGCGCGAGG
CCGACGCGGCGGAGGACCAGGCTCACGGCGTGGACCGGCGCGGCGACGAGACGCCGGACTGGATGGCCGACAAGCAGCGGCGGCTGGAGACGATCCGCGC
CGCCAAGGCCGCTCTGGAGGCGGAGGCTGCTGATCCGCCCAACCCCGAGGACGAGAGCGGGCCGGGCGCATCCTCGGGCATGCGCTGGCAGGGGCGGCCC
CTGCGCGGCGAAGACGGCGGTCCGCCCGACCGGGCCCAGCGCAACTTCACCGATCCGGACAGCCGCATCCTGCCCACGCGCGATGGCTTCGTGCAGGGCT
ACAACGGGCAGATCGCCGTCGACGCCGCGCATCAGGTGATCGTCGCGCACCGCCTCGTGACCAACTCGGCCGACTACCGTGCCCTCGTGCCGCTCGTGGA
CGACGTCCGCGCTCATCTCGGGCGCAAACCCCGCGAGGTCTCCGGCGATGCTGGATTTGCCAACGAGGCGAACTTAGCCGCGCTGCAGGTGCGGGGCATC
ACGGGCTACCTCGCTCCGGGTCGAGCACGTCATGGCGAGGCGGACGCGGCCGGCCGCCGGAGGCTGACGAAGATGCCGTTGATGAGCGCGATGGCTGTGC
GCCTGAAGCGGGCTGGCCGCCGCAGCCGCTACCGCCGCAGGAAGCAGGTGGTCGAGCCGGTGTTCGGGCAGATCAAGCAGGCCAGAGGCTTCCGACAGTT
CCTGCTCCGGGGTCTCGATCAGGTCCGGGGCGAATGGGCGATGATCTGCACGGCCCACAACCTCCTCAAACTGGCGAGGCCCGGCCACTGAGCCCAAAGC
CGACGCGCACGTCTGCTCAGACTTCGACACTCATCCTGCCTCATAAACTCGTTACTCGGACGGGCTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1335 bp444 aa571391+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MAKVFRSWDVDQGWLLPPSLHEFVPPGHMAHFVRDTVREALDLSAILDTYSEERGYPPYHPGMMVALLLYGYSRGLYSSRQLARACEERVDVMAVTGLNR
PDFRTIADFRKRHLVALSDLFVQVLRLCRAAGLVEFAHVAVDGTKVKANASRHKAMSYGRMKTAEPALAAEVDAWLQQAREADAAEDQAHGVDRRGDETP
DWMADKQRRLETIRAAKAALEAEAADPPNPEDESGPGASSGMRWQGRPLRGEDGGPPDRAQRNFTDPDSRILPTRDGFVQGYNGQIAVDAAHQVIVAHRL
VTNSADYRALVPLVDDVRAHLGRKPREVSGDAGFANEANLAALQVRGITGYLAPGRARHGEADAAGRRRLTKMPLMSAMAVRLKRAGRRSRYRRRKQVVE
PVFGQIKQARGFRQFLLRGLDQVRGEWAMICTAHNLLKLARPGH

 

Blast result :
Comments
ISMex36 is 58% aa similar to ISKpn6.
References