ISMex24

  • Family ISL3
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Methylobacterium extorquens
Methylobacterium extorquens AM1
DNA section
IS Length : 1677 bp

Ends


IR Length : 29/34

IRL : GGCGTGCAATTGGGGCTCTGACTCACTCTCGCTGGTACCAGCGGCGTTGA
IRR : GGCGTGGAATAAGGGCTCAGACGCACTCTCGCTGATCATCGAGGCGTGAG

Insertion site


Left flankDirect repeatRight flankDR Length
ACCCCGGATCTAATCACAGC0
GGTGTGATTAGATCCGGGGT0

DNA sequence

GGCGTGCAATTGGGGCTCTGACTCACTCTCGCTGGTACCAGCGGCGTTGAGTTTGCGGACATCCACGATGGAGCCGCAGCATGCGCCCCCGCTTCCGGTC
GTCGAGCCTCGTACCCGCTGGTTTCGTCGTCGATCATCTCGATAGCGACGCGGACCGGATCGGTCTGGTCGTGAGATCGGGAGCCGCGGTGGCGACCTGC
CCAGATTGTAGAACGCCTTCGCGTCGCCTCCGAAGCCGCTACCGGCGCCGTGCCGCCGACCTGCCGCTCGGCGGCCGGCGCGTCGAGCTCCGGGTCGTCG
TACGACGTTTTTGGTGTGGCGCAGCTGCCTGCAAGCGGAAGATCTTCGCCGAGCGCTTTCCCGATGACGTCCTGCCCGCCTTCGCGCGACGCACCTCGCG
GCTGGAGCAGATCGTCCATCACCTTGGACTCGCACTCGGTGGTCGGCCCGGTGCGAGCCTCGCCCAGCGCCTCAGGCTGCCCGTCAGTCGCGATACGCTC
CTGCGCGTCATCCGCCGTCGGGCGACCACACGATCCGATCCGCTCGGCGTCATCGGCATCGACGACTTCGCCTGGCGACGCAATCACCGCTACGGCACCC
TGGTCTGCGATCTCGAACGCCGCCGCATCGTCGCGCTCCTGCCAGACCGCGAGCAGGCCACCGCACAGACTTGGCTGAAGGAGAACGCCTCGATCCAGAT
CGTCGCCCGCGATCGGGGGGCGGATACGGTGAGGCGATCGCCCGCGCTCTGCCGCAGGCTATCCAGGTCGCCGACCGCTGGCACCTCATGGAGAACGCCA
GCCGCGGCTTCGTCGATGCCGTGCGCAGGTCGATGCGTCAGGTTCGCGAGATCATCAGCGCGGCCGCCCTTGATCCGGCGCTCCTCACAGCGGCCGAGCG
CATCCAGTACGAGGGTTACCAGCGGCGGGAGGAGGCGGACGCGGCCATCCGCGCACTCGCCGAAGCAGGCGTTCCGATCCGCCGGATTGGCCAGCGCCTG
GGCCACAGCCGCAAGGTGGTGCGTGCGGTCCTGCGCGGCGAGCGCACGGACGTCTTCCGGGTCCGCCAGAGCTCGCTCGAAGCCTATCTGCCCTGGCTCG
ACGCCCAGTGGGACGCAAGCAGCCGCAATGCGACCGAGATCTGGCGACAGGCGAAGCTGCAGGGCTTCCGTGGATCACTCCGCGTCGTCGGGGAATGGGC
GACGCGACGTCGGCGCGCAGAGCAGGCCAACATCGAGCAGCTTCAGCGCGTACCGTCGGCGCGAACCTTGGCACGATGGCTGACGACCGGTCGCGATCGG
TTGACCAAGGCCGAGACGCTGACCGTGGCCACCGTCGAGGACGGGATGCTGGCGCTGGTCGAGGCGCGCGAGGTGGTGGGCGCCTTCCAGACGATGGTAA
GAGCGATGGAGCCTGGCCGGCTCGAAGGATGGCTCAGGCGAGCCGAGGCGAGTCTCGTCGCCTCCTTCGCGCGCGGCATTGGTCGGGACCGATCCGCAGT
TCAGGCCGCGATCACGCTGCCATGGTCGAACGGCCAGACGGAGGGGCAGATCACGAAGCTCAAGCTCGTGAAGCGCCAGATGTACGGCCGCGGCAAGATC
GACCTGCTGCAAGCTCGCCTGATCGGCCTCACGCCTCGATGATCAGCGAGAGTGCGTCTGAGCCCTTATTCCACGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1562 bp520 aa811642+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MRPRFRSSSLVPAGFVVDHLDSDADRIGLVVRSGAAVATCPDCRTPSRRLRSRYRRRAADLPLGGRRVELRVVVRRFWCGAAACKRKIFAERFPDDVLPA
FARRTSRLEQIVHHLGLALGGRPGASLAQRLRLPVSRDTLLRVIRRRATTRSDPLGVIGIDDFAWRRNHRYGTLVCDLERRRIVALLPDREQATAQTWLK
ENASIQIVARDRGGGYGEAIARALPQAIQVADRWHLMENASRGFVDAVRRSMRQVREIISAAALDPALLTAAERIQYEGYQRREEADAAIRALAEAGVPI
RRIGQRLGHSRKVVRAVLRGERTDVFRVRQSSLEAYLPWLDAQWDASSRNATEIWRQAKLQGFRGSLRVVGEWATRRRRAEQANIEQLQRVPSARTLARW
LTTGRDRLTKAETLTVATVEDGMLALVEAREVVGAFQTMVRAMEPGRLEGWLRRAEASLVASFARGIGRDRSAVQAAITLPWSNGQTEGQITKLKLVKRQ
MYGRGKIDLLQARLIGLTPR

 

Blast result :
Comments
ISMex24 has two copies in AM1.
The transposase was reconstructed in silico : join (81-719;719-1642)
The other copy has 1-bp deletion at position 959 (A).
References
[1] Stephane Vuilleumier et.al. Methylobacterium genome sequences: a reference blueprint to investigate microbial metabolism of C1 compounds from natural and industrial sources. (2009) PLoS ONE Submitted.